Wall clock time and date at job start Mon Mar 30 2020 03:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99868 * 2 1 4 4 C 1.53000 * 109.47182 * 205.75004 * 3 2 1 5 5 C 1.53001 * 109.46624 * 65.00289 * 4 3 2 6 6 H 1.08996 * 110.33340 * 304.19468 * 5 4 3 7 7 C 1.54801 * 110.30597 * 181.79418 * 5 4 3 8 8 C 1.54505 * 103.91416 * 217.11586 * 7 5 4 9 9 C 1.54483 * 104.18358 * 0.10547 * 8 7 5 10 10 H 1.09004 * 110.37008 * 265.07990 * 9 8 7 11 11 C 1.50695 * 110.37510 * 142.74061 * 9 8 7 12 12 H 1.08000 * 120.00073 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00068 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00006 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00015 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47084 * 90.00093 * 15 13 11 17 17 H 1.48496 * 109.47078 * 210.00362 * 15 13 11 18 18 H 1.48502 * 109.46984 * 329.99897 * 15 13 11 19 19 O 1.44422 * 110.37418 * 66.45365 * 5 4 3 20 20 O 1.42907 * 109.47097 * 85.74990 * 3 2 1 21 21 C 1.42898 * 114.00170 * 286.09630 * 20 3 2 22 22 H 1.09001 * 109.46811 * 66.53746 * 1 2 3 23 23 H 1.08998 * 109.46731 * 186.53385 * 1 2 3 24 24 H 1.08993 * 109.47143 * 306.53144 * 1 2 3 25 25 H 1.08998 * 109.47138 * 325.75266 * 3 2 1 26 26 H 1.08995 * 109.47474 * 304.99911 * 4 3 2 27 27 H 1.09000 * 109.46904 * 184.99529 * 4 3 2 28 28 H 1.08998 * 110.55464 * 98.53610 * 7 5 4 29 29 H 1.09004 * 110.60939 * 335.72871 * 7 5 4 30 30 H 1.08991 * 110.51330 * 241.39154 * 8 7 5 31 31 H 1.08997 * 110.51280 * 118.81127 * 8 7 5 32 32 H 0.97002 * 120.00210 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.47099 * 196.34141 * 21 20 3 34 34 H 1.09001 * 109.47151 * 316.34093 * 21 20 3 35 35 H 1.08998 * 109.46816 * 76.34299 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4046 1.2430 -0.6267 5 6 3.2838 0.8537 -2.1014 6 1 2.7408 -0.0860 -2.2018 7 6 4.6876 0.7407 -2.7439 8 6 4.4886 1.2965 -4.1717 9 6 2.9933 1.6813 -4.2231 10 1 2.4067 0.8680 -4.6504 11 6 2.8036 2.9437 -5.0239 12 1 3.6577 3.4388 -5.4620 13 6 1.5397 3.4667 -5.1974 14 7 0.4998 2.8641 -4.6636 15 14 1.3045 5.0311 -6.1908 16 1 1.0865 4.6832 -7.6178 17 1 0.1249 5.7717 -5.6759 18 1 2.5153 5.8821 -6.0681 19 8 2.6209 1.8995 -2.8448 20 8 2.1127 1.7813 1.3436 21 6 0.8648 2.1754 1.9175 22 1 -0.3633 0.4092 -0.9427 23 1 -0.3633 -1.0210 0.1169 24 1 -0.3633 0.6117 0.8257 25 1 1.3819 1.9829 -0.5783 26 1 4.0055 0.4998 -0.1027 27 1 3.8829 2.2191 -0.5466 28 1 5.0091 -0.3001 -2.7807 29 1 5.4102 1.3455 -2.1959 30 1 4.7115 0.5305 -4.9143 31 1 5.1145 2.1747 -4.3304 32 1 -0.3894 3.2322 -4.7853 33 1 1.0482 2.7829 2.8038 34 1 0.2976 2.7560 1.1900 35 1 0.2968 1.2879 2.1965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686237899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:08 Heat of formation + Delta-G solvation = -147.127595 kcal Electronic energy + Delta-G solvation = -17071.583701 eV Core-core repulsion = 14262.771328 eV Total energy + Delta-G solvation = -2808.812373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07681 -37.87233 -35.65938 -32.93447 -31.50079 -30.78707 -28.13755 -26.38485 -25.80776 -24.07136 -21.97086 -20.35633 -19.81091 -17.02717 -16.92151 -16.59124 -15.68030 -15.00000 -14.50951 -14.26830 -14.11799 -13.61787 -13.53446 -13.35443 -12.57254 -12.34874 -12.01545 -11.80407 -11.50597 -11.09599 -10.97617 -10.89875 -10.60638 -10.38423 -10.03142 -9.99778 -9.67767 -9.61754 -9.53733 -9.08621 -8.61160 -8.06928 -6.03957 -4.15675 3.29001 3.35565 3.39427 3.79903 4.15094 4.40391 4.99901 5.17539 5.31512 5.43362 5.44137 5.50888 5.53379 5.63212 5.70240 5.75590 5.83814 5.87961 5.95217 6.07913 6.16680 6.43280 6.55507 6.65679 6.72200 6.86287 6.92221 7.30914 7.39198 7.52378 7.87145 8.22573 8.54402 8.96070 9.54719 11.04069 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.008122 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.197890 B = 3446.636761 C = 4037.441999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.394 6.394 3 C 0.245 3.755 4 C -0.089 4.089 5 C 0.068 3.932 6 H 0.059 0.941 7 C -0.148 4.148 8 C -0.147 4.147 9 C 0.206 3.794 10 H 0.026 0.974 11 C -0.527 4.527 12 H 0.063 0.937 13 C 0.076 3.924 14 N -0.867 5.867 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 O -0.354 6.354 20 O -0.399 6.399 21 C 0.025 3.975 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.260 0.740 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -3.676 8.850 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.314 6.314 3 C 0.150 3.850 4 C -0.127 4.127 5 C 0.008 3.992 6 H 0.076 0.924 7 C -0.185 4.185 8 C -0.185 4.185 9 C 0.151 3.849 10 H 0.044 0.956 11 C -0.564 4.564 12 H 0.082 0.918 13 C -0.130 4.130 14 N -0.503 5.503 15 Si 0.720 3.280 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 O -0.274 6.274 20 O -0.320 6.320 21 C -0.071 4.071 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.083 -3.655 9.039 9.810 hybrid contribution -0.635 0.852 -0.607 1.224 sum 0.447 -2.803 8.433 8.897 Atomic orbital electron populations 1.23027 0.81438 1.02490 1.00848 1.87953 1.19656 1.30040 1.93742 1.23515 0.96629 0.82926 0.81921 1.21503 0.93238 1.03354 0.94565 1.22756 0.92514 0.93501 0.90394 0.92353 1.22973 0.97722 1.00172 0.97679 1.23028 1.01283 0.99721 0.94449 1.20497 0.87383 0.96727 0.80282 0.95605 1.21064 0.93048 1.10623 1.31665 0.91841 1.25087 0.96085 0.97041 0.94744 1.70034 0.98623 1.39040 1.42642 0.86603 0.77864 0.83422 0.80132 1.20507 1.21131 1.19709 1.89447 1.70182 1.47377 1.20381 1.87977 1.30422 1.82529 1.31046 1.22907 0.86787 0.98859 0.98552 0.92907 0.90014 0.93923 0.90808 0.90383 0.89492 0.92205 0.91861 0.92779 0.91809 0.93014 0.90129 0.93674 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.68 101.05 1.08 1.35 16 2 O -0.39 -7.15 10.06 -59.04 -0.59 -7.74 16 3 C 0.24 4.53 2.79 37.16 0.10 4.64 16 4 C -0.09 -1.63 4.93 -26.73 -0.13 -1.76 16 5 C 0.07 1.40 3.21 -25.78 -0.08 1.31 16 6 H 0.06 1.24 7.76 -51.93 -0.40 0.83 16 7 C -0.15 -2.73 6.65 -24.99 -0.17 -2.89 16 8 C -0.15 -3.12 6.61 -25.16 -0.17 -3.28 16 9 C 0.21 5.40 3.06 -27.11 -0.08 5.32 16 10 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.53 -14.87 8.77 -34.44 -0.30 -15.17 16 12 H 0.06 1.74 7.56 -52.49 -0.40 1.34 16 13 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 14 N -0.87 -25.57 13.07 55.43 0.72 -24.84 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 O -0.35 -9.18 10.31 -35.23 -0.36 -9.55 16 20 O -0.40 -6.88 10.60 -59.04 -0.63 -7.50 16 21 C 0.03 0.34 9.76 101.05 0.99 1.32 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.04 0.56 4.80 -51.93 -0.25 0.31 16 25 H 0.07 1.52 7.21 -51.93 -0.37 1.15 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.35 7.70 -51.93 -0.40 0.95 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 35 H 0.04 0.54 6.27 -51.93 -0.33 0.22 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -31.20 287.22 -5.89 -37.09 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.48 Total: -1.02 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 1.14 Total: -7.12 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.72 Total: -24.84 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.58 Total: -24.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.20 -5.89 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686237899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.033 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds