Wall clock time and date at job start Mon Mar 30 2020 03:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99868 * 2 1 4 4 C 1.53000 * 109.47182 * 205.75004 * 3 2 1 5 5 C 1.53001 * 109.46624 * 65.00289 * 4 3 2 6 6 H 1.08996 * 110.33340 * 304.19468 * 5 4 3 7 7 C 1.54801 * 110.30597 * 181.79418 * 5 4 3 8 8 C 1.54505 * 103.91416 * 217.11586 * 7 5 4 9 9 C 1.54483 * 104.18358 * 0.10547 * 8 7 5 10 10 H 1.09004 * 110.37008 * 265.07990 * 9 8 7 11 11 C 1.50695 * 110.37510 * 142.74061 * 9 8 7 12 12 H 1.08000 * 120.00073 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00068 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00006 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00015 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47084 * 90.00093 * 15 13 11 17 17 H 1.48496 * 109.47078 * 210.00362 * 15 13 11 18 18 H 1.48502 * 109.46984 * 329.99897 * 15 13 11 19 19 O 1.44422 * 110.37418 * 66.45365 * 5 4 3 20 20 O 1.42907 * 109.47097 * 85.74990 * 3 2 1 21 21 C 1.42898 * 114.00170 * 286.09630 * 20 3 2 22 22 H 1.09001 * 109.46811 * 66.53746 * 1 2 3 23 23 H 1.08998 * 109.46731 * 186.53385 * 1 2 3 24 24 H 1.08993 * 109.47143 * 306.53144 * 1 2 3 25 25 H 1.08998 * 109.47138 * 325.75266 * 3 2 1 26 26 H 1.08995 * 109.47474 * 304.99911 * 4 3 2 27 27 H 1.09000 * 109.46904 * 184.99529 * 4 3 2 28 28 H 1.08998 * 110.55464 * 98.53610 * 7 5 4 29 29 H 1.09004 * 110.60939 * 335.72871 * 7 5 4 30 30 H 1.08991 * 110.51330 * 241.39154 * 8 7 5 31 31 H 1.08997 * 110.51280 * 118.81127 * 8 7 5 32 32 H 0.97002 * 120.00210 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.47099 * 196.34141 * 21 20 3 34 34 H 1.09001 * 109.47151 * 316.34093 * 21 20 3 35 35 H 1.08998 * 109.46816 * 76.34299 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4046 1.2430 -0.6267 5 6 3.2838 0.8537 -2.1014 6 1 2.7408 -0.0860 -2.2018 7 6 4.6876 0.7407 -2.7439 8 6 4.4886 1.2965 -4.1717 9 6 2.9933 1.6813 -4.2231 10 1 2.4067 0.8680 -4.6504 11 6 2.8036 2.9437 -5.0239 12 1 3.6577 3.4388 -5.4620 13 6 1.5397 3.4667 -5.1974 14 7 0.4998 2.8641 -4.6636 15 14 1.3045 5.0311 -6.1908 16 1 1.0865 4.6832 -7.6178 17 1 0.1249 5.7717 -5.6759 18 1 2.5153 5.8821 -6.0681 19 8 2.6209 1.8995 -2.8448 20 8 2.1127 1.7813 1.3436 21 6 0.8648 2.1754 1.9175 22 1 -0.3633 0.4092 -0.9427 23 1 -0.3633 -1.0210 0.1169 24 1 -0.3633 0.6117 0.8257 25 1 1.3819 1.9829 -0.5783 26 1 4.0055 0.4998 -0.1027 27 1 3.8829 2.2191 -0.5466 28 1 5.0091 -0.3001 -2.7807 29 1 5.4102 1.3455 -2.1959 30 1 4.7115 0.5305 -4.9143 31 1 5.1145 2.1747 -4.3304 32 1 -0.3894 3.2322 -4.7853 33 1 1.0482 2.7829 2.8038 34 1 0.2976 2.7560 1.1900 35 1 0.2968 1.2879 2.1965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686237899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:08 Heat of formation + Delta-G solvation = -168.492019 kcal Electronic energy + Delta-G solvation = -17072.510132 eV Core-core repulsion = 14262.771328 eV Total energy + Delta-G solvation = -2809.738804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53691 -39.55427 -36.98183 -34.93360 -33.20182 -32.53475 -29.74341 -27.96265 -26.99889 -25.81976 -23.61164 -22.07875 -21.48839 -18.81212 -18.39385 -18.13725 -17.17061 -16.72262 -16.33477 -16.00065 -15.42523 -15.30920 -14.93901 -14.60367 -14.23386 -13.92088 -13.56324 -13.49375 -13.08917 -12.83644 -12.48143 -12.39037 -12.30387 -12.11597 -11.91735 -11.58628 -11.31027 -11.06389 -10.98356 -10.83667 -10.71744 -10.04460 -8.17921 -6.37812 1.39613 1.41060 1.51920 2.39310 2.48093 2.83568 3.04306 3.61753 3.80743 3.99758 4.07481 4.16069 4.25633 4.28841 4.38308 4.43817 4.47270 4.53185 4.62711 4.68207 4.80413 4.85271 4.96893 5.01959 5.07208 5.19086 5.35313 5.52129 5.72976 6.00056 6.04320 6.15492 6.54326 6.90320 7.37383 8.90715 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.008122 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.197890 B = 3446.636761 C = 4037.441999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.407 6.407 3 C 0.250 3.750 4 C -0.084 4.084 5 C 0.062 3.938 6 H 0.047 0.953 7 C -0.136 4.136 8 C -0.140 4.140 9 C 0.197 3.803 10 H -0.010 1.010 11 C -0.550 4.550 12 H 0.066 0.934 13 C 0.021 3.979 14 N -0.904 5.904 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.265 1.265 19 O -0.386 6.386 20 O -0.409 6.409 21 C 0.016 3.984 22 H 0.029 0.971 23 H 0.108 0.892 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.108 0.892 34 H 0.040 0.960 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -3.533 9.657 10.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.328 6.328 3 C 0.155 3.845 4 C -0.122 4.122 5 C 0.003 3.997 6 H 0.065 0.935 7 C -0.173 4.173 8 C -0.178 4.178 9 C 0.141 3.859 10 H 0.008 0.992 11 C -0.587 4.587 12 H 0.085 0.915 13 C -0.181 4.181 14 N -0.542 5.542 15 Si 0.787 3.213 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.189 1.189 19 O -0.306 6.306 20 O -0.330 6.330 21 C -0.079 4.079 22 H 0.048 0.952 23 H 0.126 0.874 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.088 -3.519 9.851 10.667 hybrid contribution -1.000 0.750 -0.790 1.479 sum 1.087 -2.769 9.061 9.537 Atomic orbital electron populations 1.23196 0.80018 1.04488 1.00452 1.87920 1.21272 1.29726 1.93849 1.23249 0.96199 0.82594 0.82412 1.21464 0.93604 1.04098 0.92987 1.22943 0.93369 0.91779 0.91605 0.93522 1.22947 0.96545 1.02337 0.95493 1.22917 0.97542 1.00393 0.96983 1.20411 0.90119 0.94930 0.80427 0.99244 1.21487 0.93449 1.11460 1.32325 0.91548 1.25987 0.95767 1.00487 0.95857 1.70174 0.99053 1.40789 1.44163 0.85501 0.77892 0.79109 0.78789 1.19366 1.20864 1.18886 1.89370 1.71585 1.49192 1.20453 1.87944 1.32394 1.82622 1.30033 1.23170 0.85688 0.99895 0.99178 0.95227 0.87355 0.91927 0.94012 0.87849 0.89444 0.89154 0.89784 0.91111 0.91811 0.92966 0.87391 0.94101 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.42 10.68 113.37 1.21 1.63 16 2 O -0.41 -14.61 10.06 -126.21 -1.27 -15.88 16 3 C 0.25 9.26 2.79 71.98 0.20 9.46 16 4 C -0.08 -2.99 4.93 30.59 0.15 -2.84 16 5 C 0.06 2.53 3.21 31.21 0.10 2.63 16 6 H 0.05 2.00 7.76 -2.39 -0.02 1.98 16 7 C -0.14 -4.71 6.65 31.72 0.21 -4.50 16 8 C -0.14 -5.83 6.61 31.61 0.21 -5.62 16 9 C 0.20 10.54 3.06 30.35 0.09 10.64 16 10 H -0.01 -0.60 8.14 -2.38 -0.02 -0.61 16 11 C -0.55 -31.60 8.77 25.60 0.22 -31.37 16 12 H 0.07 3.65 7.56 -2.91 -0.02 3.63 16 13 C 0.02 1.19 5.43 84.66 0.46 1.65 16 14 N -0.90 -54.98 13.07 21.45 0.28 -54.70 16 15 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 19 O -0.39 -20.54 10.31 -148.98 -1.54 -22.08 16 20 O -0.41 -13.61 10.60 -126.21 -1.34 -14.95 16 21 C 0.02 0.41 9.76 113.37 1.11 1.52 16 22 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.06 1.57 4.80 -2.39 -0.01 1.56 16 25 H 0.04 1.80 7.21 -2.39 -0.02 1.78 16 26 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 27 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.08 2.59 7.88 -2.39 -0.02 2.57 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.06 2.62 7.70 -2.39 -0.02 2.60 16 32 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.06 7.80 -2.39 -0.02 1.04 16 35 H 0.06 1.30 6.27 -2.39 -0.01 1.29 16 Total: -1.00 -68.45 287.22 3.18 -65.26 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.05 Total: 12.86 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.97 Total: -16.82 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -4.14 Total: -52.90 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.45 3.18 -65.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686237899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.229 kcal (2) G-P(sol) polarization free energy of solvation -68.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds