Wall clock time and date at job start Mon Mar 30 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00018 * 2 1 4 4 C 1.52993 * 109.47271 * 205.76630 * 3 2 1 5 5 C 1.52998 * 109.47477 * 175.00169 * 4 3 2 6 6 H 1.09002 * 110.34906 * 304.31394 * 5 4 3 7 7 C 1.54944 * 110.31320 * 182.16908 * 5 4 3 8 8 C 1.55308 * 100.94303 * 204.63800 * 7 5 4 9 9 C 1.54388 * 102.24900 * 34.13114 * 8 7 5 10 10 H 1.09003 * 109.82631 * 98.16081 * 9 8 7 11 11 C 1.50700 * 109.83114 * 219.12473 * 9 8 7 12 12 H 1.08001 * 119.99937 * 359.59466 * 11 9 8 13 13 C 1.37879 * 120.00046 * 179.58803 * 11 9 8 14 14 N 1.31516 * 119.99710 * 180.02562 * 13 11 9 15 15 Si 1.86795 * 119.99993 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.46913 * 89.99962 * 15 13 11 17 17 H 1.48497 * 109.46977 * 209.99722 * 15 13 11 18 18 H 1.48496 * 109.47104 * 330.00094 * 15 13 11 19 19 O 1.43233 * 107.59049 * 338.64416 * 9 8 7 20 20 O 1.42905 * 109.47088 * 85.76815 * 3 2 1 21 21 C 1.42901 * 113.99951 * 286.13125 * 20 3 2 22 22 H 1.08997 * 109.46771 * 186.53339 * 1 2 3 23 23 H 1.09004 * 109.46825 * 306.53477 * 1 2 3 24 24 H 1.08995 * 109.46831 * 66.52909 * 1 2 3 25 25 H 1.09001 * 109.47368 * 325.77035 * 3 2 1 26 26 H 1.09003 * 109.47349 * 55.00403 * 4 3 2 27 27 H 1.09005 * 109.47439 * 295.00165 * 4 3 2 28 28 H 1.09002 * 111.12265 * 322.55575 * 7 5 4 29 29 H 1.08999 * 111.12616 * 86.67702 * 7 5 4 30 30 H 1.08999 * 110.84789 * 152.32146 * 8 7 5 31 31 H 1.08992 * 110.85107 * 275.74405 * 8 7 5 32 32 H 0.96995 * 119.99558 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.47093 * 196.31291 * 21 20 3 34 34 H 1.09004 * 109.46963 * 316.30522 * 21 20 3 35 35 H 1.08995 * 109.47587 * 76.30936 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.4044 1.2430 -0.6270 5 6 3.9762 2.6575 -0.7410 6 1 3.2952 3.2976 -1.3020 7 6 5.3666 2.6222 -1.4241 8 6 6.0005 3.9272 -0.8699 9 6 5.4038 4.0031 0.5520 10 1 6.1195 3.6112 1.2747 11 6 5.0656 5.4325 0.8889 12 1 5.2590 6.2166 0.1718 13 6 4.5091 5.7393 2.1125 14 7 4.2134 6.9866 2.4062 15 14 4.1750 4.3832 3.3529 16 1 5.3670 4.2006 4.2197 17 1 3.0064 4.7552 4.1902 18 1 3.8862 3.1158 2.6350 19 8 4.2139 3.2060 0.5651 20 8 2.1132 1.7811 1.3436 21 6 0.8653 2.1744 1.9182 22 1 -0.3633 -1.0210 0.1169 23 1 -0.3633 0.6118 0.8258 24 1 -0.3633 0.4093 -0.9426 25 1 1.3819 1.9830 -0.5781 26 1 3.3368 0.7974 -1.6195 27 1 4.0580 0.6364 -0.0001 28 1 5.9352 1.7461 -1.1124 29 1 5.2722 2.6607 -2.5093 30 1 7.0867 3.8447 -0.8309 31 1 5.6998 4.7884 -1.4665 32 1 3.8223 7.2025 3.2671 33 1 1.0487 2.7814 2.8047 34 1 0.2977 2.7554 1.1912 35 1 0.2976 1.2867 2.1968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686237904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:12 Heat of formation + Delta-G solvation = -135.917006 kcal Electronic energy + Delta-G solvation = -17436.824836 eV Core-core repulsion = 14628.498590 eV Total energy + Delta-G solvation = -2808.326245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16142 -38.09924 -35.65244 -32.86355 -31.68304 -30.97414 -28.39560 -26.58623 -25.82309 -24.00657 -21.91222 -20.58609 -19.80775 -17.15990 -17.00374 -16.63187 -15.72761 -15.46091 -14.89059 -14.19738 -13.97875 -13.75440 -13.38424 -12.81510 -12.53177 -12.45596 -12.26390 -11.98212 -11.82434 -11.19636 -10.96728 -10.90280 -10.66210 -10.24927 -10.06434 -9.83935 -9.77949 -9.62928 -9.47779 -9.14434 -8.40536 -7.98649 -5.98644 -4.06736 3.50601 3.56325 3.70999 3.94668 4.17649 4.71128 4.80442 4.93312 5.19021 5.26816 5.37106 5.41545 5.44901 5.49169 5.51187 5.64894 5.66860 5.78306 5.84770 6.01166 6.07571 6.20531 6.38131 6.45712 6.50476 6.67634 6.80353 7.16950 7.38911 7.50364 7.76514 8.41220 8.58190 9.01987 9.67902 11.11694 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.011044 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.431889 B = 2534.793779 C = 3372.724998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.402 6.402 3 C 0.245 3.755 4 C -0.101 4.101 5 C 0.080 3.920 6 H 0.055 0.945 7 C -0.152 4.152 8 C -0.134 4.134 9 C 0.166 3.834 10 H 0.035 0.965 11 C -0.532 4.532 12 H 0.071 0.929 13 C 0.084 3.916 14 N -0.900 5.900 15 Si 0.854 3.146 16 H -0.291 1.291 17 H -0.297 1.297 18 H -0.193 1.193 19 O -0.355 6.355 20 O -0.353 6.353 21 C 0.024 3.976 22 H 0.083 0.917 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.262 0.738 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -12.567 -6.181 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.323 6.323 3 C 0.150 3.850 4 C -0.139 4.139 5 C 0.022 3.978 6 H 0.073 0.927 7 C -0.189 4.189 8 C -0.171 4.171 9 C 0.110 3.890 10 H 0.052 0.948 11 C -0.569 4.569 12 H 0.090 0.910 13 C -0.119 4.119 14 N -0.538 5.538 15 Si 0.680 3.320 16 H -0.217 1.217 17 H -0.223 1.223 18 H -0.115 1.115 19 O -0.275 6.275 20 O -0.272 6.272 21 C -0.072 4.072 22 H 0.101 0.899 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.755 -12.641 -5.790 15.047 hybrid contribution -0.670 -0.088 0.490 0.834 sum -6.424 -12.728 -5.300 15.211 Atomic orbital electron populations 1.23010 0.81743 1.02795 1.00258 1.88002 1.19318 1.30891 1.94065 1.23398 0.95263 0.81616 0.84688 1.21681 0.93370 0.98560 1.00265 1.22598 0.95198 0.91704 0.88314 0.92691 1.23250 0.96931 0.99094 0.99670 1.23011 0.99509 0.96144 0.98482 1.20690 0.84340 0.91626 0.92327 0.94763 1.21309 1.43092 0.90761 1.01763 0.91047 1.25008 0.93210 0.95347 0.98341 1.69960 1.42602 1.18343 1.22907 0.87212 0.77108 0.87017 0.80632 1.21749 1.22339 1.11536 1.88980 1.46197 1.66829 1.25483 1.88355 1.28704 1.81722 1.28467 1.22888 0.86983 0.98256 0.99085 0.89896 0.93313 0.94125 0.93099 0.89686 0.89905 0.91359 0.91556 0.92061 0.91162 0.92879 0.89931 0.94210 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.68 101.05 1.08 1.29 16 2 O -0.40 -6.21 10.56 -59.04 -0.62 -6.83 16 3 C 0.25 4.10 2.83 37.15 0.11 4.20 16 4 C -0.10 -1.64 5.10 -26.74 -0.14 -1.77 16 5 C 0.08 1.50 3.43 -25.71 -0.09 1.41 16 6 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.15 -2.50 6.57 -24.48 -0.16 -2.66 16 8 C -0.13 -2.65 6.52 -24.78 -0.16 -2.81 16 9 C 0.17 4.04 2.82 -27.16 -0.08 3.97 16 10 H 0.03 0.86 7.56 -51.93 -0.39 0.46 16 11 C -0.53 -15.44 9.33 -34.44 -0.32 -15.76 16 12 H 0.07 2.21 7.77 -52.49 -0.41 1.81 16 13 C 0.08 2.53 5.47 -17.82 -0.10 2.43 16 14 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 15 Si 0.85 22.44 27.02 -169.99 -4.59 17.85 16 16 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 17 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 18 H -0.19 -4.97 4.74 56.52 0.27 -4.70 16 19 O -0.35 -8.36 6.27 -53.83 -0.34 -8.70 16 20 O -0.35 -6.95 8.53 -65.89 -0.56 -7.52 16 21 C 0.02 0.39 9.76 101.05 0.99 1.38 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.54 4.80 -51.93 -0.25 0.29 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.79 7.56 -51.93 -0.39 0.40 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.04 8.06 -51.93 -0.42 0.63 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.43 7.67 -51.93 -0.40 1.03 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.04 0.58 7.80 -51.93 -0.41 0.17 16 35 H 0.04 0.53 6.27 -51.93 -0.33 0.20 16 LS Contribution 278.73 15.07 4.20 4.20 Total: -1.00 -33.40 278.73 -5.65 -39.05 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.64 Total: -2.10 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 1.13 Total: -8.32 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.77 Total: -27.64 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.52 Total: -23.05 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.59 Total: 17.85 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.40 -5.65 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686237904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.864 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds