Wall clock time and date at job start Mon Mar 30 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00018 * 2 1 4 4 C 1.52993 * 109.47271 * 205.76630 * 3 2 1 5 5 C 1.52998 * 109.47477 * 175.00169 * 4 3 2 6 6 H 1.09002 * 110.34906 * 304.31394 * 5 4 3 7 7 C 1.54944 * 110.31320 * 182.16908 * 5 4 3 8 8 C 1.55308 * 100.94303 * 204.63800 * 7 5 4 9 9 C 1.54388 * 102.24900 * 34.13114 * 8 7 5 10 10 H 1.09003 * 109.82631 * 98.16081 * 9 8 7 11 11 C 1.50700 * 109.83114 * 219.12473 * 9 8 7 12 12 H 1.08001 * 119.99937 * 359.59466 * 11 9 8 13 13 C 1.37879 * 120.00046 * 179.58803 * 11 9 8 14 14 N 1.31516 * 119.99710 * 180.02562 * 13 11 9 15 15 Si 1.86795 * 119.99993 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.46913 * 89.99962 * 15 13 11 17 17 H 1.48497 * 109.46977 * 209.99722 * 15 13 11 18 18 H 1.48496 * 109.47104 * 330.00094 * 15 13 11 19 19 O 1.43233 * 107.59049 * 338.64416 * 9 8 7 20 20 O 1.42905 * 109.47088 * 85.76815 * 3 2 1 21 21 C 1.42901 * 113.99951 * 286.13125 * 20 3 2 22 22 H 1.08997 * 109.46771 * 186.53339 * 1 2 3 23 23 H 1.09004 * 109.46825 * 306.53477 * 1 2 3 24 24 H 1.08995 * 109.46831 * 66.52909 * 1 2 3 25 25 H 1.09001 * 109.47368 * 325.77035 * 3 2 1 26 26 H 1.09003 * 109.47349 * 55.00403 * 4 3 2 27 27 H 1.09005 * 109.47439 * 295.00165 * 4 3 2 28 28 H 1.09002 * 111.12265 * 322.55575 * 7 5 4 29 29 H 1.08999 * 111.12616 * 86.67702 * 7 5 4 30 30 H 1.08999 * 110.84789 * 152.32146 * 8 7 5 31 31 H 1.08992 * 110.85107 * 275.74405 * 8 7 5 32 32 H 0.96995 * 119.99558 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.47093 * 196.31291 * 21 20 3 34 34 H 1.09004 * 109.46963 * 316.30522 * 21 20 3 35 35 H 1.08995 * 109.47587 * 76.30936 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.4044 1.2430 -0.6270 5 6 3.9762 2.6575 -0.7410 6 1 3.2952 3.2976 -1.3020 7 6 5.3666 2.6222 -1.4241 8 6 6.0005 3.9272 -0.8699 9 6 5.4038 4.0031 0.5520 10 1 6.1195 3.6112 1.2747 11 6 5.0656 5.4325 0.8889 12 1 5.2590 6.2166 0.1718 13 6 4.5091 5.7393 2.1125 14 7 4.2134 6.9866 2.4062 15 14 4.1750 4.3832 3.3529 16 1 5.3670 4.2006 4.2197 17 1 3.0064 4.7552 4.1902 18 1 3.8862 3.1158 2.6350 19 8 4.2139 3.2060 0.5651 20 8 2.1132 1.7811 1.3436 21 6 0.8653 2.1744 1.9182 22 1 -0.3633 -1.0210 0.1169 23 1 -0.3633 0.6118 0.8258 24 1 -0.3633 0.4093 -0.9426 25 1 1.3819 1.9830 -0.5781 26 1 3.3368 0.7974 -1.6195 27 1 4.0580 0.6364 -0.0001 28 1 5.9352 1.7461 -1.1124 29 1 5.2722 2.6607 -2.5093 30 1 7.0867 3.8447 -0.8309 31 1 5.6998 4.7884 -1.4665 32 1 3.8223 7.2025 3.2671 33 1 1.0487 2.7814 2.8047 34 1 0.2977 2.7554 1.1912 35 1 0.2976 1.2867 2.1968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686237904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:11 Heat of formation + Delta-G solvation = -159.183885 kcal Electronic energy + Delta-G solvation = -17437.833763 eV Core-core repulsion = 14628.498590 eV Total energy + Delta-G solvation = -2809.335173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50046 -39.60210 -36.86659 -34.86958 -33.36180 -32.57564 -29.95183 -28.01098 -26.92557 -25.67176 -23.34486 -22.09734 -21.50885 -18.84798 -18.41235 -18.15623 -17.22328 -16.73201 -16.68602 -15.84061 -15.32018 -14.97643 -14.74831 -14.48854 -14.36116 -13.94343 -13.69587 -13.38437 -13.17472 -12.76507 -12.53385 -12.34283 -12.25460 -12.05049 -11.59801 -11.51509 -11.39511 -11.15635 -10.91237 -10.71059 -10.62087 -9.84763 -8.30397 -6.41212 1.39727 1.42022 1.85345 2.50801 2.61319 2.96998 3.01437 3.47139 3.76169 3.95771 4.10967 4.17346 4.27394 4.31663 4.39846 4.45797 4.49603 4.54208 4.61199 4.70797 4.79134 4.87362 4.99212 5.02369 5.05282 5.19468 5.35954 5.60185 5.63323 6.09799 6.20570 6.26481 6.60339 6.85520 7.37853 8.83563 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.011044 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.431889 B = 2534.793779 C = 3372.724998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.414 6.414 3 C 0.242 3.758 4 C -0.094 4.094 5 C 0.068 3.932 6 H 0.051 0.949 7 C -0.134 4.134 8 C -0.133 4.133 9 C 0.163 3.837 10 H 0.030 0.970 11 C -0.536 4.536 12 H 0.035 0.965 13 C 0.029 3.971 14 N -0.947 5.947 15 Si 0.919 3.081 16 H -0.289 1.289 17 H -0.298 1.298 18 H -0.184 1.184 19 O -0.376 6.376 20 O -0.392 6.392 21 C 0.020 3.980 22 H 0.103 0.897 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -15.217 -7.335 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.335 6.335 3 C 0.147 3.853 4 C -0.131 4.131 5 C 0.010 3.990 6 H 0.068 0.932 7 C -0.171 4.171 8 C -0.171 4.171 9 C 0.107 3.893 10 H 0.048 0.952 11 C -0.573 4.573 12 H 0.054 0.946 13 C -0.170 4.170 14 N -0.587 5.587 15 Si 0.744 3.256 16 H -0.216 1.216 17 H -0.225 1.225 18 H -0.105 1.105 19 O -0.296 6.296 20 O -0.312 6.312 21 C -0.076 4.076 22 H 0.122 0.878 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.165 -15.309 -6.966 17.914 hybrid contribution -0.592 0.751 0.754 1.218 sum -6.757 -14.558 -6.212 17.210 Atomic orbital electron populations 1.23261 0.79782 1.04375 1.01204 1.87967 1.21490 1.29998 1.94060 1.23478 0.95880 0.82295 0.83660 1.21660 0.92872 0.96517 1.02066 1.22895 0.96757 0.92954 0.86360 0.93152 1.23211 0.94873 0.97602 1.01445 1.22943 1.00741 0.97798 0.95613 1.20545 0.84884 0.88845 0.95067 0.95231 1.21691 1.41920 0.92885 1.00809 0.94641 1.25840 0.93416 0.97245 1.00462 1.70085 1.44636 1.20334 1.23672 0.86228 0.76639 0.84616 0.78153 1.21624 1.22508 1.10520 1.88878 1.45532 1.66699 1.28494 1.88286 1.30551 1.82285 1.30077 1.23002 0.86484 0.99372 0.98772 0.87842 0.93212 0.92548 0.92321 0.86099 0.90738 0.89444 0.88126 0.90136 0.92494 0.92809 0.91382 0.93128 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.68 113.37 1.21 1.39 16 2 O -0.41 -11.57 10.56 -126.21 -1.33 -12.90 16 3 C 0.24 7.46 2.83 71.98 0.20 7.67 16 4 C -0.09 -2.73 5.10 30.59 0.16 -2.57 16 5 C 0.07 2.38 3.43 31.26 0.11 2.48 16 6 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.13 -3.91 6.57 32.05 0.21 -3.70 16 8 C -0.13 -5.04 6.52 31.86 0.21 -4.83 16 9 C 0.16 7.86 2.82 30.32 0.09 7.94 16 10 H 0.03 1.46 7.56 -2.39 -0.02 1.44 16 11 C -0.54 -31.81 9.33 25.60 0.24 -31.57 16 12 H 0.04 2.29 7.77 -2.91 -0.02 2.27 16 13 C 0.03 1.77 5.47 84.65 0.46 2.23 16 14 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 15 Si 0.92 47.61 27.02 68.60 1.85 49.46 16 16 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 17 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 18 H -0.18 -9.19 4.74 99.48 0.47 -8.72 16 19 O -0.38 -17.25 6.27 -131.19 -0.82 -18.07 16 20 O -0.39 -14.78 8.53 -119.67 -1.02 -15.80 16 21 C 0.02 0.61 9.76 113.37 1.11 1.72 16 22 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.05 0.97 4.80 -2.39 -0.01 0.95 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 1.69 7.56 -2.39 -0.02 1.67 16 26 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.09 2.27 8.06 -2.39 -0.02 2.25 16 29 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.06 2.28 7.67 -2.39 -0.02 2.26 16 32 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.40 7.80 -2.38 -0.02 1.38 16 35 H 0.06 1.59 6.27 -2.39 -0.01 1.57 16 Total: -1.00 -73.56 278.73 3.78 -69.77 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.82 Total: 8.12 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.99 Total: -19.25 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.30 Total: -61.34 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -3.18 Total: -46.78 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.85 Total: 49.46 kcal Total: -73.56 3.78 -69.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686237904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.413 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds