Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00089 * 2 1 4 4 O 1.42900 * 109.47310 * 85.75768 * 3 2 1 5 5 C 1.42904 * 113.99752 * 286.09804 * 4 3 2 6 6 C 1.53000 * 109.47018 * 205.75477 * 3 2 1 7 7 C 1.52995 * 109.82358 * 59.29842 * 6 3 2 8 8 C 1.54385 * 109.83020 * 180.18249 * 6 3 2 9 9 C 1.55540 * 102.14676 * 140.94484 * 8 6 3 10 10 C 1.54942 * 100.94734 * 325.84812 * 9 8 6 11 11 H 1.09003 * 110.31085 * 277.54724 * 10 9 8 12 12 C 1.50707 * 110.38957 * 155.42499 * 10 9 8 13 13 H 1.07994 * 120.00200 * 2.78314 * 12 10 9 14 14 C 1.37879 * 119.99770 * 182.78304 * 12 10 9 15 15 N 1.31514 * 119.99459 * 179.97438 * 14 12 10 16 16 Si 1.86799 * 120.00123 * 0.02562 * 14 12 10 17 17 H 1.48494 * 109.47571 * 89.99906 * 16 14 12 18 18 H 1.48508 * 109.46777 * 209.99646 * 16 14 12 19 19 H 1.48501 * 109.47153 * 329.99680 * 16 14 12 20 20 O 1.43233 * 109.83339 * 298.41207 * 6 3 2 21 21 H 1.09006 * 109.47044 * 306.53078 * 1 2 3 22 22 H 1.08993 * 109.47414 * 66.53140 * 1 2 3 23 23 H 1.08998 * 109.47049 * 186.53760 * 1 2 3 24 24 H 1.08996 * 109.46861 * 325.75291 * 3 2 1 25 25 H 1.08992 * 109.47264 * 196.34451 * 5 4 3 26 26 H 1.09002 * 109.47316 * 316.34363 * 5 4 3 27 27 H 1.09001 * 109.47043 * 76.33451 * 5 4 3 28 28 H 1.09003 * 109.47305 * 60.70268 * 7 6 3 29 29 H 1.09004 * 109.47237 * 300.69912 * 7 6 3 30 30 H 1.09004 * 109.47134 * 180.69575 * 7 6 3 31 31 H 1.09001 * 110.84947 * 259.15152 * 8 6 3 32 32 H 1.09003 * 110.84344 * 22.77103 * 8 6 3 33 33 H 1.09002 * 111.09979 * 207.93785 * 9 8 6 34 34 H 1.08997 * 111.17313 * 83.79518 * 9 8 6 35 35 H 0.97005 * 119.99762 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 2.1129 1.7812 1.3436 5 6 0.8650 2.1753 1.9176 6 6 3.4045 1.2429 -0.6268 7 6 3.3058 0.7177 -2.0604 8 6 4.0423 2.6489 -0.6269 9 6 5.5255 2.3355 -0.2786 10 6 5.3544 1.1297 0.6793 11 1 5.1280 1.4766 1.6875 12 6 6.6013 0.2833 0.6858 13 1 7.4620 0.5853 0.1078 14 6 6.6430 -0.8768 1.4299 15 7 7.7310 -1.6157 1.4352 16 14 5.1539 -1.3997 2.4291 17 1 4.2758 -2.2599 1.5960 18 1 5.6017 -2.1595 3.6240 19 1 4.4006 -0.1954 2.8620 20 8 4.2478 0.3831 0.1486 21 1 -0.3633 0.6118 0.8258 22 1 -0.3634 0.4092 -0.9426 23 1 -0.3633 -1.0210 0.1170 24 1 1.3819 1.9829 -0.5783 25 1 1.0484 2.7828 2.8037 26 1 0.2977 2.7559 1.1901 27 1 0.2969 1.2878 2.1965 28 1 2.6861 1.3914 -2.6523 29 1 2.8580 -0.2760 -2.0533 30 1 4.3031 0.6638 -2.4971 31 1 3.9629 3.1108 -1.6109 32 1 3.5889 3.2805 0.1371 33 1 5.9955 3.1774 0.2297 34 1 6.0877 2.0534 -1.1688 35 1 7.7606 -2.4316 1.9589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686240368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = -157.465480 kcal Electronic energy + Delta-G solvation = -17802.332616 eV Core-core repulsion = 14993.071959 eV Total energy + Delta-G solvation = -2809.260657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03781 -39.22992 -36.97136 -34.94714 -33.32708 -32.46553 -29.12615 -28.67552 -26.92686 -26.01892 -24.41730 -22.08304 -21.09525 -18.98785 -18.28685 -18.06260 -17.60614 -16.66547 -16.49738 -15.62685 -15.30231 -14.89548 -14.62424 -14.55516 -14.40473 -13.86730 -13.58516 -13.50640 -13.12609 -12.99140 -12.81038 -12.44173 -12.28558 -12.20384 -11.75975 -11.54414 -11.42439 -11.25870 -10.91940 -10.84092 -10.74428 -9.99817 -8.36625 -6.46525 1.30850 1.42675 1.57216 2.37763 2.59080 2.80637 2.93898 3.43229 3.72186 3.90955 3.95523 4.10220 4.27129 4.34966 4.40633 4.43901 4.48825 4.55398 4.65323 4.69987 4.78749 4.86739 4.94348 5.04886 5.11720 5.13897 5.40974 5.53537 5.57820 6.14776 6.17000 6.22357 6.53909 6.80507 7.30568 8.77467 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.026205 B = 0.011444 C = 0.009890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.257589 B = 2446.127752 C = 2830.379661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.415 6.415 3 C 0.241 3.759 4 O -0.413 6.413 5 C 0.015 3.985 6 C 0.096 3.904 7 C -0.140 4.140 8 C -0.128 4.128 9 C -0.129 4.129 10 C 0.171 3.829 11 H 0.017 0.983 12 C -0.524 4.524 13 H 0.050 0.950 14 C 0.034 3.966 15 N -0.937 5.937 16 Si 0.961 3.039 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.260 1.260 20 O -0.391 6.391 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.867 10.183 -4.362 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.336 6.336 3 C 0.146 3.854 4 O -0.334 6.334 5 C -0.081 4.081 6 C 0.056 3.944 7 C -0.197 4.197 8 C -0.165 4.165 9 C -0.167 4.167 10 C 0.115 3.885 11 H 0.035 0.965 12 C -0.562 4.562 13 H 0.068 0.932 14 C -0.165 4.165 15 N -0.577 5.577 16 Si 0.789 3.211 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.185 1.185 20 O -0.312 6.312 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.546 9.677 -4.171 20.468 hybrid contribution -0.561 -0.505 0.567 0.944 sum -18.107 9.172 -3.604 20.615 Atomic orbital electron populations 1.23305 0.79888 1.04058 1.01662 1.88153 1.21389 1.30264 1.93824 1.23977 0.94977 0.82977 0.83466 1.88144 1.32105 1.82402 1.30710 1.23182 0.85778 0.99450 0.99679 1.22403 0.87866 0.92048 0.92095 1.21939 1.02686 1.01898 0.93153 1.23134 0.94588 0.94761 1.04052 1.23072 0.96571 0.97671 0.99392 1.20850 0.84081 0.90359 0.93191 0.96506 1.21417 0.98042 1.08269 1.28453 0.93199 1.25735 0.97811 0.96056 0.96938 1.70035 1.29446 1.15547 1.42676 0.85460 0.79595 0.78750 0.77335 1.21323 1.21881 1.18491 1.88552 1.38203 1.36337 1.68086 0.92351 0.91695 0.89238 0.88913 0.88819 0.91294 0.93687 0.88514 0.93021 0.92367 0.87202 0.89650 0.89913 0.91638 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 10.68 113.37 1.21 1.35 16 2 O -0.42 -14.60 9.80 -122.39 -1.20 -15.80 16 3 C 0.24 7.79 2.04 71.98 0.15 7.94 16 4 O -0.41 -14.44 9.64 -121.75 -1.17 -15.62 16 5 C 0.01 0.34 9.76 113.37 1.11 1.44 16 6 C 0.10 3.54 0.81 -10.33 -0.01 3.53 16 7 C -0.14 -4.40 8.58 71.98 0.62 -3.78 16 8 C -0.13 -3.97 6.00 31.94 0.19 -3.78 16 9 C -0.13 -5.12 6.54 32.13 0.21 -4.91 16 10 C 0.17 8.79 2.67 30.51 0.08 8.87 16 11 H 0.02 0.93 7.28 -2.39 -0.02 0.92 16 12 C -0.52 -32.12 9.39 25.60 0.24 -31.88 16 13 H 0.05 3.24 8.01 -2.91 -0.02 3.22 16 14 C 0.03 2.17 5.47 84.66 0.46 2.64 16 15 N -0.94 -61.50 13.96 21.45 0.30 -61.20 16 16 Si 0.96 53.29 26.31 68.60 1.80 55.10 16 17 H -0.29 -16.37 7.11 99.48 0.71 -15.67 16 18 H -0.29 -15.35 7.11 99.48 0.71 -14.65 16 19 H -0.26 -14.35 6.56 99.48 0.65 -13.70 16 20 O -0.39 -19.79 8.04 -130.19 -1.05 -20.84 16 21 H 0.06 1.13 4.80 -2.38 -0.01 1.12 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.09 2.17 7.56 -2.39 -0.02 2.15 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.13 7.80 -2.39 -0.02 1.11 16 27 H 0.04 1.02 6.27 -2.39 -0.01 1.01 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.77 7.67 -2.39 -0.02 1.76 16 30 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.11 2.54 7.82 -2.39 -0.02 2.52 16 32 H 0.08 2.48 7.24 -2.39 -0.02 2.46 16 33 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.06 2.64 8.05 -2.39 -0.02 2.62 16 35 H 0.27 16.45 8.31 -92.70 -0.77 15.68 16 Total: -1.00 -78.52 280.13 3.95 -74.58 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.00 Total: 2.36 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.26 Total: -18.58 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.30 Total: -61.20 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -3.42 Total: -52.26 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.80 Total: 55.10 kcal Total: -78.52 3.95 -74.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686240368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.889 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds