Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00131 * 2 1 4 4 O 1.42897 * 109.47262 * 85.76286 * 3 2 1 5 5 C 1.42902 * 113.99782 * 286.10156 * 4 3 2 6 6 C 1.53003 * 109.47199 * 205.76139 * 3 2 1 7 7 C 1.52996 * 109.99010 * 301.08482 * 6 3 2 8 8 C 1.54102 * 109.88012 * 179.97438 * 6 3 2 9 9 C 1.54812 * 104.18785 * 238.54798 * 8 6 3 10 10 C 1.54991 * 102.12640 * 339.10180 * 9 8 6 11 11 H 1.09009 * 110.61847 * 278.54469 * 10 9 8 12 12 C 1.50700 * 110.61980 * 155.54421 * 10 9 8 13 13 H 1.07997 * 119.99798 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99944 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99826 * 179.97438 * 14 12 10 16 16 Si 1.86799 * 120.00185 * 359.97438 * 14 12 10 17 17 H 1.48502 * 109.46875 * 90.00334 * 16 14 12 18 18 H 1.48499 * 109.47375 * 210.00082 * 16 14 12 19 19 H 1.48499 * 109.47339 * 330.00199 * 16 14 12 20 20 O 1.43745 * 109.87793 * 62.16874 * 6 3 2 21 21 H 1.09001 * 109.47297 * 186.53293 * 1 2 3 22 22 H 1.08998 * 109.47235 * 306.53533 * 1 2 3 23 23 H 1.09005 * 109.47232 * 66.53688 * 1 2 3 24 24 H 1.09003 * 109.46827 * 325.75971 * 3 2 1 25 25 H 1.09000 * 109.46764 * 76.32995 * 5 4 3 26 26 H 1.08999 * 109.46767 * 196.32648 * 5 4 3 27 27 H 1.08993 * 109.47215 * 316.33252 * 5 4 3 28 28 H 1.08999 * 109.47227 * 298.91069 * 7 6 3 29 29 H 1.08994 * 109.47539 * 58.91814 * 7 6 3 30 30 H 1.09010 * 109.47106 * 178.91902 * 7 6 3 31 31 H 1.09001 * 110.48433 * 119.87090 * 8 6 3 32 32 H 1.09003 * 110.48506 * 357.22789 * 8 6 3 33 33 H 1.08994 * 110.90375 * 97.32087 * 9 8 6 34 34 H 1.09005 * 110.90332 * 220.88573 * 9 8 6 35 35 H 0.97005 * 120.00039 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7811 1.3436 5 6 0.8651 2.1751 1.9177 6 6 3.4045 1.2429 -0.6270 7 6 4.2889 0.2739 0.1601 8 6 4.0400 2.6468 -0.6323 9 6 4.3302 2.9262 -2.1271 10 6 4.3461 1.4978 -2.7283 11 1 5.3119 1.0212 -2.5599 12 6 4.0215 1.5374 -4.1994 13 1 3.8196 2.4820 -4.6825 14 6 3.9824 0.3679 -4.9285 15 7 3.6987 0.4025 -6.2122 16 14 4.3324 -1.2658 -4.0930 17 1 3.0641 -1.8384 -3.5746 18 1 4.9348 -2.2043 -5.0736 19 1 5.2765 -1.0535 -2.9666 20 8 3.3063 0.8137 -1.9953 21 1 -0.3634 -1.0210 0.1169 22 1 -0.3633 0.6118 0.8257 23 1 -0.3634 0.4092 -0.9427 24 1 1.3818 1.9829 -0.5783 25 1 0.2972 1.2876 2.1965 26 1 1.0487 2.7824 2.8041 27 1 0.2978 2.7559 1.1904 28 1 4.3902 0.6264 1.1866 29 1 3.8333 -0.7163 0.1592 30 1 5.2735 0.2213 -0.3047 31 1 4.9659 2.6485 -0.0571 32 1 3.3416 3.3833 -0.2350 33 1 3.5365 3.5266 -2.5717 34 1 5.2984 3.4114 -2.2513 35 1 3.6715 -0.4203 -6.7252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686240369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = -134.584187 kcal Electronic energy + Delta-G solvation = -17622.048370 eV Core-core repulsion = 14813.779920 eV Total energy + Delta-G solvation = -2808.268450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66109 -37.92695 -35.78785 -32.86309 -31.53249 -30.82934 -27.83953 -27.05178 -25.92822 -24.88003 -22.76193 -20.20478 -19.58964 -17.13325 -16.96379 -16.82787 -16.03683 -15.16881 -14.49222 -14.32010 -13.84283 -13.75556 -13.49506 -13.11359 -12.81521 -12.50332 -12.18785 -12.06158 -11.75198 -11.42376 -11.09460 -10.81498 -10.68116 -10.38870 -10.22906 -9.91418 -9.69059 -9.66012 -9.60071 -9.43973 -8.61980 -8.42306 -6.11689 -4.20919 3.41744 3.48351 3.59180 3.62665 3.99533 4.51246 4.86927 4.97489 5.13127 5.17309 5.27792 5.34326 5.39959 5.49309 5.53966 5.55622 5.67142 5.80331 5.86086 6.03829 6.10647 6.31525 6.44057 6.45487 6.58599 6.69778 6.81121 7.11342 7.20399 7.30963 7.60646 8.19199 8.43527 8.88920 9.51263 10.98382 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.009670 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.383954 B = 2894.738402 C = 3208.014875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.379 6.379 3 C 0.255 3.745 4 O -0.388 6.388 5 C 0.025 3.975 6 C 0.115 3.885 7 C -0.152 4.152 8 C -0.139 4.139 9 C -0.138 4.138 10 C 0.166 3.834 11 H 0.034 0.966 12 C -0.515 4.515 13 H 0.081 0.919 14 C 0.084 3.916 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.297 1.297 19 H -0.265 1.265 20 O -0.362 6.362 21 H 0.084 0.916 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 2.540 14.677 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.298 6.298 3 C 0.160 3.840 4 O -0.308 6.308 5 C -0.072 4.072 6 C 0.074 3.926 7 C -0.209 4.209 8 C -0.176 4.176 9 C -0.176 4.176 10 C 0.112 3.888 11 H 0.052 0.948 12 C -0.552 4.552 13 H 0.099 0.901 14 C -0.121 4.121 15 N -0.528 5.528 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.225 1.225 19 H -0.190 1.190 20 O -0.283 6.283 21 H 0.102 0.898 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.039 2.138 14.518 15.221 hybrid contribution -0.405 -0.538 0.347 0.758 sum -4.445 1.600 14.865 15.598 Atomic orbital electron populations 1.23032 0.81888 1.02813 1.00140 1.88079 1.19069 1.29181 1.93513 1.23451 0.95395 0.82990 0.82153 1.87993 1.30135 1.82464 1.30254 1.22936 0.86771 0.98973 0.98496 1.21646 0.90005 0.94372 0.86554 1.22102 0.99326 1.00182 0.99333 1.22904 1.00701 0.95618 0.98413 1.23056 1.01471 1.00117 0.92909 1.21339 0.87945 0.87140 0.92414 0.94794 1.20921 1.49824 0.95545 0.88908 0.90129 1.25070 0.92818 0.99725 0.94478 1.69924 1.47356 1.28518 1.07034 0.86474 0.79656 0.82661 0.78691 1.19663 1.22466 1.18959 1.89181 1.56529 1.67574 1.14991 0.89777 0.93952 0.93591 0.92203 0.93566 0.89863 0.93985 0.91990 0.91856 0.92617 0.90933 0.91417 0.91199 0.91466 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.68 101.05 1.08 1.33 16 2 O -0.38 -7.10 9.80 -62.81 -0.62 -7.71 16 3 C 0.26 4.60 1.98 37.16 0.07 4.68 16 4 O -0.39 -6.10 9.52 -59.04 -0.56 -6.66 16 5 C 0.02 0.28 9.76 101.05 0.99 1.27 16 6 C 0.12 2.30 0.77 -90.04 -0.07 2.23 16 7 C -0.15 -2.84 8.32 37.16 0.31 -2.53 16 8 C -0.14 -2.44 6.02 -25.20 -0.15 -2.60 16 9 C -0.14 -2.78 6.55 -24.73 -0.16 -2.94 16 10 C 0.17 4.10 2.46 -26.83 -0.07 4.04 16 11 H 0.03 0.85 7.02 -51.92 -0.36 0.49 16 12 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 13 H 0.08 2.45 8.01 -52.49 -0.42 2.03 16 14 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 15 N -0.89 -27.53 13.96 55.43 0.77 -26.75 16 16 Si 0.90 23.56 26.58 -169.99 -4.52 19.05 16 17 H -0.27 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 19 H -0.26 -6.74 6.46 56.52 0.37 -6.37 16 20 O -0.36 -8.93 8.82 -41.73 -0.37 -9.30 16 21 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.04 0.49 4.80 -51.93 -0.25 0.24 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.07 7.56 -51.93 -0.39 0.67 16 25 H 0.05 0.49 6.27 -51.93 -0.33 0.17 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.44 7.80 -51.93 -0.41 0.03 16 28 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 29 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 30 H 0.05 1.03 8.11 -51.92 -0.42 0.61 16 31 H 0.07 1.15 7.70 -51.93 -0.40 0.75 16 32 H 0.07 1.08 7.50 -51.93 -0.39 0.69 16 33 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 279.88 15.07 4.22 4.22 Total: -1.00 -32.49 279.88 -4.94 -37.43 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.45 Total: -2.95 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 1.58 Total: -7.32 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.55 Total: -23.67 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.52 Total: 19.05 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.49 -4.94 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686240369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.152 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds