Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00131 * 2 1 4 4 O 1.42897 * 109.47262 * 85.76286 * 3 2 1 5 5 C 1.42902 * 113.99782 * 286.10156 * 4 3 2 6 6 C 1.53003 * 109.47199 * 205.76139 * 3 2 1 7 7 C 1.52996 * 109.99010 * 301.08482 * 6 3 2 8 8 C 1.54102 * 109.88012 * 179.97438 * 6 3 2 9 9 C 1.54812 * 104.18785 * 238.54798 * 8 6 3 10 10 C 1.54991 * 102.12640 * 339.10180 * 9 8 6 11 11 H 1.09009 * 110.61847 * 278.54469 * 10 9 8 12 12 C 1.50700 * 110.61980 * 155.54421 * 10 9 8 13 13 H 1.07997 * 119.99798 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99944 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99826 * 179.97438 * 14 12 10 16 16 Si 1.86799 * 120.00185 * 359.97438 * 14 12 10 17 17 H 1.48502 * 109.46875 * 90.00334 * 16 14 12 18 18 H 1.48499 * 109.47375 * 210.00082 * 16 14 12 19 19 H 1.48499 * 109.47339 * 330.00199 * 16 14 12 20 20 O 1.43745 * 109.87793 * 62.16874 * 6 3 2 21 21 H 1.09001 * 109.47297 * 186.53293 * 1 2 3 22 22 H 1.08998 * 109.47235 * 306.53533 * 1 2 3 23 23 H 1.09005 * 109.47232 * 66.53688 * 1 2 3 24 24 H 1.09003 * 109.46827 * 325.75971 * 3 2 1 25 25 H 1.09000 * 109.46764 * 76.32995 * 5 4 3 26 26 H 1.08999 * 109.46767 * 196.32648 * 5 4 3 27 27 H 1.08993 * 109.47215 * 316.33252 * 5 4 3 28 28 H 1.08999 * 109.47227 * 298.91069 * 7 6 3 29 29 H 1.08994 * 109.47539 * 58.91814 * 7 6 3 30 30 H 1.09010 * 109.47106 * 178.91902 * 7 6 3 31 31 H 1.09001 * 110.48433 * 119.87090 * 8 6 3 32 32 H 1.09003 * 110.48506 * 357.22789 * 8 6 3 33 33 H 1.08994 * 110.90375 * 97.32087 * 9 8 6 34 34 H 1.09005 * 110.90332 * 220.88573 * 9 8 6 35 35 H 0.97005 * 120.00039 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7811 1.3436 5 6 0.8651 2.1751 1.9177 6 6 3.4045 1.2429 -0.6270 7 6 4.2889 0.2739 0.1601 8 6 4.0400 2.6468 -0.6323 9 6 4.3302 2.9262 -2.1271 10 6 4.3461 1.4978 -2.7283 11 1 5.3119 1.0212 -2.5599 12 6 4.0215 1.5374 -4.1994 13 1 3.8196 2.4820 -4.6825 14 6 3.9824 0.3679 -4.9285 15 7 3.6987 0.4025 -6.2122 16 14 4.3324 -1.2658 -4.0930 17 1 3.0641 -1.8384 -3.5746 18 1 4.9348 -2.2043 -5.0736 19 1 5.2765 -1.0535 -2.9666 20 8 3.3063 0.8137 -1.9953 21 1 -0.3634 -1.0210 0.1169 22 1 -0.3633 0.6118 0.8257 23 1 -0.3634 0.4092 -0.9427 24 1 1.3818 1.9829 -0.5783 25 1 0.2972 1.2876 2.1965 26 1 1.0487 2.7824 2.8041 27 1 0.2978 2.7559 1.1904 28 1 4.3902 0.6264 1.1866 29 1 3.8333 -0.7163 0.1592 30 1 5.2735 0.2213 -0.3047 31 1 4.9659 2.6485 -0.0571 32 1 3.3416 3.3833 -0.2350 33 1 3.5365 3.5266 -2.5717 34 1 5.2984 3.4114 -2.2513 35 1 3.6715 -0.4203 -6.7252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686240369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = -157.603221 kcal Electronic energy + Delta-G solvation = -17623.046550 eV Core-core repulsion = 14813.779920 eV Total energy + Delta-G solvation = -2809.266630 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.10961 -39.39708 -36.99494 -34.96341 -33.21459 -32.53239 -29.16197 -28.72636 -26.96853 -26.33367 -24.41704 -22.01018 -21.09641 -19.13316 -18.25158 -18.13434 -17.52778 -16.92044 -16.27214 -15.49169 -15.30587 -15.21068 -14.80429 -14.58477 -14.53054 -14.20025 -13.64307 -13.53661 -13.20151 -12.88185 -12.67240 -12.48170 -12.31781 -12.14545 -11.83495 -11.59530 -11.43272 -11.31147 -10.97789 -10.87414 -10.78904 -10.25954 -8.39281 -6.51440 1.32294 1.40451 1.49796 2.27300 2.36161 2.70407 3.00385 3.61056 3.68396 3.75984 4.01940 4.09949 4.21652 4.29868 4.40248 4.41597 4.46009 4.51342 4.58527 4.68775 4.78307 4.86138 4.93361 4.96630 5.06255 5.16664 5.35518 5.41383 5.50865 6.01191 6.06858 6.18008 6.39713 6.65478 7.24154 8.74725 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.009670 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.383954 B = 2894.738402 C = 3208.014875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.409 6.409 3 C 0.261 3.739 4 O -0.395 6.395 5 C 0.015 3.985 6 C 0.097 3.903 7 C -0.146 4.146 8 C -0.125 4.125 9 C -0.133 4.133 10 C 0.164 3.836 11 H 0.033 0.967 12 C -0.523 4.523 13 H 0.049 0.951 14 C 0.033 3.967 15 N -0.934 5.934 16 Si 0.953 3.047 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.252 1.252 20 O -0.391 6.391 21 H 0.098 0.902 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 2.783 17.364 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.330 6.330 3 C 0.166 3.834 4 O -0.316 6.316 5 C -0.081 4.081 6 C 0.057 3.943 7 C -0.203 4.203 8 C -0.162 4.162 9 C -0.171 4.171 10 C 0.108 3.892 11 H 0.050 0.950 12 C -0.560 4.560 13 H 0.068 0.932 14 C -0.167 4.167 15 N -0.573 5.573 16 Si 0.779 3.221 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.176 1.176 20 O -0.312 6.312 21 H 0.117 0.883 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.992 2.395 17.224 17.842 hybrid contribution -0.513 -0.542 -0.418 0.855 sum -4.505 1.854 16.806 17.498 Atomic orbital electron populations 1.23256 0.79875 1.04432 1.00927 1.88028 1.21410 1.29776 1.93803 1.23153 0.94029 0.82920 0.83319 1.87950 1.32379 1.82439 1.28808 1.23230 0.85532 0.99873 0.99452 1.22008 0.92073 0.95810 0.84405 1.22048 0.98648 0.99173 1.00454 1.22864 1.02159 0.94587 0.96627 1.22978 1.02351 0.97300 0.94451 1.21174 0.87602 0.90066 0.90313 0.94969 1.21218 1.48892 0.94240 0.91695 0.93237 1.25825 0.93001 1.02963 0.94931 1.70026 1.49398 1.29506 1.08402 0.85590 0.79195 0.79041 0.78232 1.20808 1.21318 1.17590 1.89066 1.56296 1.68087 1.17771 0.88317 0.91187 0.94331 0.92556 0.92818 0.87227 0.93009 0.89626 0.93410 0.92802 0.88519 0.89423 0.92189 0.89470 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 10.68 113.37 1.21 1.49 16 2 O -0.41 -14.73 9.80 -122.61 -1.20 -15.93 16 3 C 0.26 8.87 1.98 71.98 0.14 9.01 16 4 O -0.39 -11.11 9.52 -126.21 -1.20 -12.31 16 5 C 0.01 0.28 9.76 113.37 1.11 1.39 16 6 C 0.10 3.68 0.77 -10.42 -0.01 3.67 16 7 C -0.15 -5.11 8.32 71.98 0.60 -4.51 16 8 C -0.12 -4.02 6.02 31.59 0.19 -3.83 16 9 C -0.13 -5.15 6.55 31.89 0.21 -4.94 16 10 C 0.16 7.99 2.46 30.53 0.08 8.06 16 11 H 0.03 1.59 7.02 -2.38 -0.02 1.57 16 12 C -0.52 -30.82 9.39 25.60 0.24 -30.58 16 13 H 0.05 3.13 8.01 -2.91 -0.02 3.11 16 14 C 0.03 2.01 5.47 84.65 0.46 2.47 16 15 N -0.93 -59.17 13.96 21.45 0.30 -58.87 16 16 Si 0.95 49.11 26.58 68.60 1.82 50.93 16 17 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 18 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.25 -12.29 6.46 99.48 0.64 -11.65 16 20 O -0.39 -19.03 8.82 -142.77 -1.26 -20.29 16 21 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.07 1.42 4.80 -2.39 -0.01 1.41 16 23 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.06 1.92 7.56 -2.39 -0.02 1.90 16 25 H 0.05 0.95 6.27 -2.39 -0.01 0.94 16 26 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 0.90 7.80 -2.39 -0.02 0.89 16 28 H 0.08 2.55 7.78 -2.39 -0.02 2.53 16 29 H 0.05 1.79 7.66 -2.39 -0.02 1.78 16 30 H 0.05 1.86 8.11 -2.38 -0.02 1.84 16 31 H 0.10 2.66 7.70 -2.39 -0.02 2.64 16 32 H 0.09 2.48 7.50 -2.39 -0.02 2.47 16 33 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 34 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 35 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 Total: -1.00 -70.73 279.88 3.68 -67.05 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.99 Total: 7.18 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 4.23 Total: -17.76 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.30 Total: -58.87 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -3.66 Total: -48.53 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.82 Total: 50.93 kcal Total: -70.73 3.68 -67.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686240369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.556 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds