Wall clock time and date at job start Mon Mar 30 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48501 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47252 * 300.00369 * 3 2 1 6 6 H 1.48500 * 109.46827 * 60.00790 * 3 2 1 7 7 C 1.37875 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47128 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.46889 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99778 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.52290 * 30.13026 * 13 12 11 15 15 C 1.53089 * 109.52471 * 269.99923 * 13 12 11 16 16 O 1.42894 * 109.41806 * 182.48415 * 15 13 12 17 17 C 1.42912 * 114.09613 * 61.15860 * 16 15 13 18 18 C 1.53093 * 109.41532 * 298.84708 * 17 16 15 19 19 C 1.53175 * 109.16350 * 57.60318 * 18 17 16 20 20 H 1.09004 * 109.53902 * 62.88939 * 19 18 17 21 21 O 1.42904 * 109.54133 * 183.15306 * 19 18 17 22 22 H 0.97007 * 119.99648 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46851 * 60.00336 * 9 7 2 24 24 H 1.08999 * 109.47356 * 300.00276 * 9 7 2 25 25 H 1.08997 * 109.47213 * 59.99916 * 10 9 7 26 26 H 1.09008 * 109.46725 * 300.00032 * 10 9 7 27 27 H 1.08997 * 109.47286 * 59.99785 * 11 10 9 28 28 H 1.08997 * 109.46848 * 299.99883 * 11 10 9 29 29 H 1.09002 * 109.48010 * 302.47246 * 15 13 12 30 30 H 1.09001 * 109.47539 * 62.49087 * 15 13 12 31 31 H 1.09003 * 109.47685 * 58.82891 * 17 16 15 32 32 H 1.09002 * 109.48178 * 178.84902 * 17 16 15 33 33 H 1.09000 * 109.51938 * 177.51234 * 18 17 16 34 34 H 1.09004 * 109.51696 * 297.70029 * 18 17 16 35 35 H 0.96705 * 113.99667 * 299.55871 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4087 -6.0733 -0.0018 13 6 1.7941 -7.3634 -0.0018 14 1 0.8350 -7.3100 -0.5171 15 6 1.5746 -7.8256 1.4410 16 8 1.0132 -9.1397 1.4387 17 6 1.8433 -10.1277 0.8245 18 6 2.0737 -9.7579 -0.6431 19 6 2.7060 -8.3647 -0.7174 20 1 3.6818 -8.3809 -0.2318 21 8 2.8572 -7.9807 -2.0855 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8537 -5.0446 -0.8913 28 1 0.8532 -5.0450 0.8886 29 1 2.5289 -7.8388 1.9676 30 1 0.8921 -7.1395 1.9426 31 1 2.8011 -10.1711 1.3431 32 1 1.3544 -11.1002 0.8822 33 1 2.7424 -10.4864 -1.1016 34 1 1.1204 -9.7539 -1.1716 35 1 3.4237 -8.5722 -2.5997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686566878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:24 Heat of formation + Delta-G solvation = -162.105844 kcal Electronic energy + Delta-G solvation = -16223.489925 eV Core-core repulsion = 13414.028047 eV Total energy + Delta-G solvation = -2809.461879 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95818 -37.33266 -36.62440 -33.86201 -32.02631 -31.60022 -29.98830 -26.59737 -24.70295 -23.65213 -22.66508 -20.79845 -19.97987 -17.65613 -17.00962 -16.47647 -16.32865 -15.64910 -15.30881 -14.85584 -14.43218 -14.24750 -13.67350 -13.33477 -13.25942 -12.61938 -12.19885 -12.08183 -11.67556 -11.43340 -11.18879 -10.90945 -10.75204 -10.49520 -10.37716 -10.15475 -10.05960 -9.73549 -9.40943 -9.09523 -9.05888 -8.33411 -5.98440 -4.00481 3.33364 3.40365 3.44189 3.46926 3.83514 4.06563 4.46355 4.48798 4.60715 4.75511 4.87548 4.97190 5.21207 5.30521 5.37662 5.41116 5.43655 5.59848 5.69604 5.80537 5.85236 5.96040 6.22991 6.69061 6.72160 6.90494 7.12455 7.49907 7.56991 7.69357 7.81739 8.01398 8.44418 9.06381 9.63506 11.13206 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.055427 B = 0.004311 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.050160 B = 6493.434810 C = 6742.885850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.062 3.938 12 O -0.372 6.372 13 C 0.064 3.936 14 H 0.074 0.926 15 C 0.042 3.958 16 O -0.377 6.377 17 C 0.060 3.940 18 C -0.188 4.188 19 C 0.107 3.893 20 H 0.063 0.937 21 O -0.552 6.552 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 -20.775 0.181 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.014 4.014 12 O -0.291 6.291 13 C 0.004 3.996 14 H 0.092 0.908 15 C -0.035 4.035 16 O -0.295 6.295 17 C -0.017 4.017 18 C -0.226 4.226 19 C 0.047 3.953 20 H 0.081 0.919 21 O -0.356 6.356 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.777 -20.174 0.453 20.529 hybrid contribution 0.730 0.481 -0.334 0.935 sum 4.507 -19.693 0.119 20.202 Atomic orbital electron populations 1.69981 1.06075 1.26505 1.51026 1.25029 0.94864 0.99309 0.95320 0.86511 0.80144 0.83662 0.77550 1.19688 1.21005 1.21008 1.21262 0.93172 0.90845 1.50370 0.92473 1.19059 0.93935 0.91076 0.97368 1.21648 0.99649 0.91629 1.01510 1.22884 0.92157 0.86855 0.99518 1.87956 1.33867 1.12506 1.94799 1.22622 0.96774 0.85055 0.95102 0.90837 1.23143 1.00173 0.84091 0.96120 1.87970 1.45213 1.17110 1.79256 1.22579 0.95463 0.92352 0.91309 1.23006 1.03198 0.97490 0.98864 1.21912 0.98100 0.91833 0.83434 0.91867 1.86658 1.72708 1.55184 1.21096 0.93052 0.96430 0.96465 0.92632 0.92505 0.93557 0.93836 0.91960 0.87714 0.92792 0.88371 0.90120 0.89924 0.77911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.37 5.52 -26.73 -0.15 -2.52 16 11 C 0.06 1.17 5.75 37.16 0.21 1.39 16 12 O -0.37 -6.63 9.94 -41.48 -0.41 -7.04 16 13 C 0.06 0.91 2.48 -26.59 -0.07 0.84 16 14 H 0.07 1.10 7.79 -51.93 -0.40 0.70 16 15 C 0.04 0.52 6.46 37.20 0.24 0.76 16 16 O -0.38 -4.51 10.77 -35.23 -0.38 -4.89 16 17 C 0.06 0.52 6.84 37.21 0.25 0.77 16 18 C -0.19 -1.61 5.77 -26.59 -0.15 -1.77 16 19 C 0.11 1.25 3.23 -26.55 -0.09 1.16 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 21 O -0.55 -7.03 13.27 -41.48 -0.55 -7.58 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 28 H 0.04 0.78 7.93 -51.93 -0.41 0.36 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.30 7.93 -51.93 -0.41 0.89 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.37 2.81 9.09 45.56 0.41 3.22 16 LS Contribution 292.03 15.07 4.40 4.40 Total: -1.00 -33.20 292.03 -6.52 -39.72 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.00 Total: -2.22 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.29 Total: -12.76 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.34 Total: -19.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.20 -6.52 -39.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686566878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.385 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds