Wall clock time and date at job start Mon Mar 30 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48501 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47252 * 300.00369 * 3 2 1 6 6 H 1.48500 * 109.46827 * 60.00790 * 3 2 1 7 7 C 1.37875 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47128 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.46889 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99778 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.52290 * 30.13026 * 13 12 11 15 15 C 1.53089 * 109.52471 * 269.99923 * 13 12 11 16 16 O 1.42894 * 109.41806 * 182.48415 * 15 13 12 17 17 C 1.42912 * 114.09613 * 61.15860 * 16 15 13 18 18 C 1.53093 * 109.41532 * 298.84708 * 17 16 15 19 19 C 1.53175 * 109.16350 * 57.60318 * 18 17 16 20 20 H 1.09004 * 109.53902 * 62.88939 * 19 18 17 21 21 O 1.42904 * 109.54133 * 183.15306 * 19 18 17 22 22 H 0.97007 * 119.99648 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46851 * 60.00336 * 9 7 2 24 24 H 1.08999 * 109.47356 * 300.00276 * 9 7 2 25 25 H 1.08997 * 109.47213 * 59.99916 * 10 9 7 26 26 H 1.09008 * 109.46725 * 300.00032 * 10 9 7 27 27 H 1.08997 * 109.47286 * 59.99785 * 11 10 9 28 28 H 1.08997 * 109.46848 * 299.99883 * 11 10 9 29 29 H 1.09002 * 109.48010 * 302.47246 * 15 13 12 30 30 H 1.09001 * 109.47539 * 62.49087 * 15 13 12 31 31 H 1.09003 * 109.47685 * 58.82891 * 17 16 15 32 32 H 1.09002 * 109.48178 * 178.84902 * 17 16 15 33 33 H 1.09000 * 109.51938 * 177.51234 * 18 17 16 34 34 H 1.09004 * 109.51696 * 297.70029 * 18 17 16 35 35 H 0.96705 * 113.99667 * 299.55871 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4087 -6.0733 -0.0018 13 6 1.7941 -7.3634 -0.0018 14 1 0.8350 -7.3100 -0.5171 15 6 1.5746 -7.8256 1.4410 16 8 1.0132 -9.1397 1.4387 17 6 1.8433 -10.1277 0.8245 18 6 2.0737 -9.7579 -0.6431 19 6 2.7060 -8.3647 -0.7174 20 1 3.6818 -8.3809 -0.2318 21 8 2.8572 -7.9807 -2.0855 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8537 -5.0446 -0.8913 28 1 0.8532 -5.0450 0.8886 29 1 2.5289 -7.8388 1.9676 30 1 0.8921 -7.1395 1.9426 31 1 2.8011 -10.1711 1.3431 32 1 1.3544 -11.1002 0.8822 33 1 2.7424 -10.4864 -1.1016 34 1 1.1204 -9.7539 -1.1716 35 1 3.4237 -8.5722 -2.5997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686566878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:24 Heat of formation + Delta-G solvation = -187.181789 kcal Electronic energy + Delta-G solvation = -16224.577300 eV Core-core repulsion = 13414.028047 eV Total energy + Delta-G solvation = -2810.549253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91642 -38.58756 -37.58404 -35.87800 -33.66815 -32.72185 -31.15797 -28.52306 -25.64616 -25.05594 -24.05813 -22.25233 -21.34711 -18.68147 -18.51210 -18.01176 -17.44204 -16.82262 -16.49263 -16.44061 -16.04074 -15.30987 -14.81014 -14.55689 -14.35136 -14.14664 -13.84863 -13.50846 -13.22561 -12.85134 -12.53443 -12.48625 -12.21096 -11.98711 -11.82934 -11.64637 -11.44590 -11.20154 -11.01789 -10.91377 -10.57753 -10.34303 -8.22060 -6.33408 1.40461 1.40986 1.54857 2.35307 2.45858 2.90676 3.11389 3.16528 3.62382 3.74750 3.91287 3.93810 4.11791 4.12834 4.24272 4.44536 4.50906 4.53955 4.64706 4.69691 4.75528 4.85826 4.88808 4.96196 5.12955 5.14757 5.47366 5.67072 5.80743 5.96093 6.18785 6.29452 6.82172 6.85506 7.35951 8.90397 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.055427 B = 0.004311 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.050160 B = 6493.434810 C = 6742.885850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.094 4.094 11 C 0.074 3.926 12 O -0.385 6.385 13 C 0.053 3.947 14 H 0.059 0.941 15 C 0.049 3.951 16 O -0.393 6.393 17 C 0.051 3.949 18 C -0.176 4.176 19 C 0.105 3.895 20 H 0.071 0.929 21 O -0.579 6.579 22 H 0.265 0.735 23 H -0.006 1.006 24 H -0.001 1.001 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -21.760 0.334 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.132 4.132 11 C -0.003 4.003 12 O -0.304 6.304 13 C -0.006 4.006 14 H 0.077 0.923 15 C -0.029 4.029 16 O -0.312 6.312 17 C -0.025 4.025 18 C -0.214 4.214 19 C 0.046 3.954 20 H 0.089 0.911 21 O -0.388 6.388 22 H 0.074 0.926 23 H 0.013 0.987 24 H 0.017 0.983 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.092 -21.196 0.598 21.807 hybrid contribution 0.312 0.692 -0.411 0.863 sum 5.404 -20.504 0.187 21.205 Atomic orbital electron populations 1.70103 1.07810 1.27860 1.51534 1.25997 0.95820 1.03437 0.94518 0.85341 0.78988 0.78457 0.77911 1.18663 1.20245 1.20093 1.21672 0.93591 0.92190 1.50843 0.92195 1.18937 0.94236 0.92566 0.95295 1.21382 0.98597 0.91911 1.01312 1.22552 0.91722 0.86224 0.99765 1.87897 1.33958 1.13556 1.95034 1.22947 0.96865 0.83988 0.96789 0.92251 1.22994 1.00484 0.84641 0.94751 1.87955 1.46373 1.17094 1.79731 1.22893 0.96193 0.92313 0.91082 1.22935 1.03155 0.96144 0.99130 1.21979 0.98098 0.92462 0.82885 0.91087 1.86600 1.73622 1.56728 1.21812 0.92634 0.98749 0.98255 0.92293 0.93059 0.94132 0.92858 0.90997 0.88403 0.91225 0.86047 0.86759 0.90960 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.09 -4.26 5.52 30.59 0.17 -4.09 16 11 C 0.07 2.84 5.75 71.98 0.41 3.25 16 12 O -0.38 -13.65 9.94 -143.00 -1.42 -15.07 16 13 C 0.05 1.48 2.48 30.68 0.08 1.56 16 14 H 0.06 1.81 7.79 -2.39 -0.02 1.79 16 15 C 0.05 1.17 6.46 72.01 0.47 1.64 16 16 O -0.39 -8.79 10.77 -148.98 -1.60 -10.39 16 17 C 0.05 0.74 6.84 72.01 0.49 1.23 16 18 C -0.18 -2.56 5.77 30.68 0.18 -2.39 16 19 C 0.10 2.29 3.23 30.71 0.10 2.39 16 20 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 21 O -0.58 -14.04 13.27 -143.00 -1.90 -15.94 16 22 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 23 H -0.01 -0.35 8.14 -2.38 -0.02 -0.36 16 24 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.04 1.59 8.09 -2.39 -0.02 1.57 16 28 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 2.42 7.93 -2.39 -0.02 2.41 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.40 5.20 9.09 -74.05 -0.67 4.53 16 Total: -1.00 -71.25 292.03 0.51 -70.74 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.38 Total: 7.14 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 2.74 Total: -26.20 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.28 Total: -57.36 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -4.92 Total: -41.40 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.25 0.51 -70.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686566878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.440 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds