Wall clock time and date at job start Mon Mar 30 2020 03:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00560 * 2 1 4 4 H 1.48499 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47109 * 300.00355 * 3 2 1 6 6 H 1.48506 * 109.46566 * 60.00176 * 3 2 1 7 7 C 1.37883 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47288 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.42906 * 114.00252 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.56881 * 29.84111 * 13 12 11 15 15 C 1.53099 * 109.52000 * 269.68882 * 13 12 11 16 16 O 1.42897 * 109.41530 * 182.48388 * 15 13 12 17 17 C 1.42903 * 114.09725 * 61.15177 * 16 15 13 18 18 C 1.53087 * 109.42251 * 298.84682 * 17 16 15 19 19 C 1.53169 * 109.52402 * 150.00075 * 13 12 11 20 20 H 1.08996 * 109.62021 * 296.79707 * 19 13 12 21 21 O 1.42903 * 109.54566 * 57.02245 * 19 13 12 22 22 H 0.97010 * 119.99494 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47229 * 59.99447 * 9 7 2 24 24 H 1.09005 * 109.47273 * 299.99556 * 9 7 2 25 25 H 1.08995 * 109.47609 * 59.99456 * 10 9 7 26 26 H 1.09011 * 109.46789 * 299.99791 * 10 9 7 27 27 H 1.09005 * 109.47365 * 59.99826 * 11 10 9 28 28 H 1.08997 * 109.47116 * 299.99624 * 11 10 9 29 29 H 1.09002 * 109.48128 * 62.49758 * 15 13 12 30 30 H 1.08999 * 109.47577 * 302.46639 * 15 13 12 31 31 H 1.09002 * 109.48018 * 178.85547 * 17 16 15 32 32 H 1.09003 * 109.48724 * 58.83908 * 17 16 15 33 33 H 1.09003 * 109.52200 * 297.70375 * 18 17 16 34 34 H 1.08999 * 109.52603 * 177.51511 * 18 17 16 35 35 H 0.96700 * 114.00311 * 179.55581 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2450 -3.6621 -0.0015 11 6 1.4800 -4.9871 -0.0020 12 8 2.4085 -6.0733 -0.0024 13 6 1.7939 -7.3634 -0.0035 14 1 0.8329 -7.3096 -0.5148 15 6 1.5804 -7.8296 1.4391 16 8 1.0191 -9.1437 1.4355 17 6 1.8465 -10.1299 0.8151 18 6 2.0707 -9.7562 -0.6524 19 6 2.7027 -8.3628 -0.7256 20 1 2.8151 -8.0677 -1.7688 21 8 3.9846 -8.3858 -0.0945 22 1 -0.4850 0.8402 0.0004 23 1 0.6245 -2.5562 -0.8919 24 1 0.6239 -2.5575 0.8881 25 1 2.8711 -3.6049 0.8889 26 1 2.8724 -3.6040 -0.8911 27 1 0.8536 -5.0447 -0.8923 28 1 0.8530 -5.0450 0.8877 29 1 0.8999 -7.1450 1.9454 30 1 2.5369 -7.8443 1.9616 31 1 1.3577 -11.1025 0.8720 32 1 2.8064 -10.1750 1.3295 33 1 1.1152 -9.7507 -1.1770 34 1 2.7374 -10.4835 -1.1158 35 1 4.6102 -9.0036 -0.4970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686566880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:27 Heat of formation + Delta-G solvation = -160.959785 kcal Electronic energy + Delta-G solvation = -16281.954840 eV Core-core repulsion = 13472.542658 eV Total energy + Delta-G solvation = -2809.412182 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.98594 -37.30322 -36.42113 -33.87314 -31.94485 -31.58221 -29.92915 -26.60080 -24.97716 -23.63232 -22.65165 -20.66871 -19.94366 -17.22818 -17.01829 -16.42616 -16.35438 -15.74265 -15.36391 -14.75048 -14.47094 -14.35921 -13.92526 -13.29307 -12.60763 -12.53347 -12.22326 -12.04410 -11.82043 -11.43715 -11.29344 -10.91135 -10.68878 -10.49746 -10.41543 -10.26205 -9.97589 -9.62759 -9.42196 -9.07759 -9.00061 -8.34639 -5.99710 -4.01711 3.32667 3.39829 3.44691 3.53317 4.01114 4.03443 4.47778 4.50097 4.68967 4.75575 4.85953 5.02369 5.22389 5.36482 5.38461 5.47039 5.57836 5.65113 5.71153 5.75222 5.90878 5.98705 6.20362 6.69494 6.70193 7.00769 7.10798 7.46269 7.60053 7.68146 7.79821 8.00084 8.43216 9.05197 9.62386 11.11922 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.061663 B = 0.004254 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.969863 B = 6580.285193 C = 6796.974086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.057 3.943 12 O -0.367 6.367 13 C 0.065 3.935 14 H 0.077 0.923 15 C 0.042 3.958 16 O -0.380 6.380 17 C 0.062 3.938 18 C -0.188 4.188 19 C 0.105 3.895 20 H 0.065 0.935 21 O -0.549 6.549 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -20.497 -1.155 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.019 4.019 12 O -0.286 6.286 13 C 0.006 3.994 14 H 0.095 0.905 15 C -0.035 4.035 16 O -0.299 6.299 17 C -0.015 4.015 18 C -0.226 4.226 19 C 0.046 3.954 20 H 0.083 0.917 21 O -0.354 6.354 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.270 -19.931 -0.690 20.209 hybrid contribution 0.552 0.541 -0.601 0.979 sum 3.822 -19.390 -1.291 19.805 Atomic orbital electron populations 1.69978 1.06082 1.26519 1.51021 1.25029 0.94865 0.99321 0.95301 0.86509 0.80161 0.83638 0.77555 1.19672 1.21012 1.20994 1.21265 0.93191 0.90838 1.50387 0.92455 1.19059 0.93925 0.91102 0.97343 1.21644 0.99621 0.91573 1.01592 1.22928 0.92272 0.87182 0.99499 1.88058 1.33440 1.12306 1.94824 1.22627 0.95392 0.84873 0.96505 0.90503 1.23059 1.00136 0.83659 0.96616 1.87931 1.45430 1.17402 1.79137 1.22507 0.95679 0.91847 0.91487 1.22946 1.02825 0.97698 0.99108 1.21937 0.83951 0.93091 0.96423 0.91695 1.86651 1.22846 1.66274 1.59621 0.93047 0.96493 0.96442 0.92498 0.92591 0.93742 0.93713 0.88547 0.91382 0.88943 0.92430 0.89929 0.90113 0.78113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.35 5.52 -26.73 -0.15 -2.50 16 11 C 0.06 1.06 5.75 37.16 0.21 1.27 16 12 O -0.37 -6.50 9.84 -46.82 -0.46 -6.97 16 13 C 0.07 0.91 2.59 -26.59 -0.07 0.85 16 14 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 15 C 0.04 0.58 6.32 37.21 0.24 0.81 16 16 O -0.38 -4.91 10.77 -35.23 -0.38 -5.28 16 17 C 0.06 0.59 6.69 37.20 0.25 0.84 16 18 C -0.19 -1.58 5.83 -26.59 -0.16 -1.74 16 19 C 0.11 1.20 3.52 -26.55 -0.09 1.10 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 21 O -0.55 -6.48 12.13 -46.82 -0.57 -7.05 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 27 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.04 0.80 7.96 -51.93 -0.41 0.38 16 29 H 0.10 1.31 7.96 -51.93 -0.41 0.89 16 30 H 0.07 0.98 7.82 -51.93 -0.41 0.58 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.37 2.55 9.08 45.56 0.41 2.96 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -32.86 290.34 -6.61 -39.46 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.97 Total: -2.27 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.32 Total: -12.70 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.41 Total: -19.30 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.86 -6.61 -39.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686566880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.496 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds