Wall clock time and date at job start Mon Mar 30 2020 03:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00560 * 2 1 4 4 H 1.48499 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47109 * 300.00355 * 3 2 1 6 6 H 1.48506 * 109.46566 * 60.00176 * 3 2 1 7 7 C 1.37883 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47288 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.42906 * 114.00252 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.56881 * 29.84111 * 13 12 11 15 15 C 1.53099 * 109.52000 * 269.68882 * 13 12 11 16 16 O 1.42897 * 109.41530 * 182.48388 * 15 13 12 17 17 C 1.42903 * 114.09725 * 61.15177 * 16 15 13 18 18 C 1.53087 * 109.42251 * 298.84682 * 17 16 15 19 19 C 1.53169 * 109.52402 * 150.00075 * 13 12 11 20 20 H 1.08996 * 109.62021 * 296.79707 * 19 13 12 21 21 O 1.42903 * 109.54566 * 57.02245 * 19 13 12 22 22 H 0.97010 * 119.99494 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47229 * 59.99447 * 9 7 2 24 24 H 1.09005 * 109.47273 * 299.99556 * 9 7 2 25 25 H 1.08995 * 109.47609 * 59.99456 * 10 9 7 26 26 H 1.09011 * 109.46789 * 299.99791 * 10 9 7 27 27 H 1.09005 * 109.47365 * 59.99826 * 11 10 9 28 28 H 1.08997 * 109.47116 * 299.99624 * 11 10 9 29 29 H 1.09002 * 109.48128 * 62.49758 * 15 13 12 30 30 H 1.08999 * 109.47577 * 302.46639 * 15 13 12 31 31 H 1.09002 * 109.48018 * 178.85547 * 17 16 15 32 32 H 1.09003 * 109.48724 * 58.83908 * 17 16 15 33 33 H 1.09003 * 109.52200 * 297.70375 * 18 17 16 34 34 H 1.08999 * 109.52603 * 177.51511 * 18 17 16 35 35 H 0.96700 * 114.00311 * 179.55581 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2450 -3.6621 -0.0015 11 6 1.4800 -4.9871 -0.0020 12 8 2.4085 -6.0733 -0.0024 13 6 1.7939 -7.3634 -0.0035 14 1 0.8329 -7.3096 -0.5148 15 6 1.5804 -7.8296 1.4391 16 8 1.0191 -9.1437 1.4355 17 6 1.8465 -10.1299 0.8151 18 6 2.0707 -9.7562 -0.6524 19 6 2.7027 -8.3628 -0.7256 20 1 2.8151 -8.0677 -1.7688 21 8 3.9846 -8.3858 -0.0945 22 1 -0.4850 0.8402 0.0004 23 1 0.6245 -2.5562 -0.8919 24 1 0.6239 -2.5575 0.8881 25 1 2.8711 -3.6049 0.8889 26 1 2.8724 -3.6040 -0.8911 27 1 0.8536 -5.0447 -0.8923 28 1 0.8530 -5.0450 0.8877 29 1 0.8999 -7.1450 1.9454 30 1 2.5369 -7.8443 1.9616 31 1 1.3577 -11.1025 0.8720 32 1 2.8064 -10.1750 1.3295 33 1 1.1152 -9.7507 -1.1770 34 1 2.7374 -10.4835 -1.1158 35 1 4.6102 -9.0036 -0.4970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686566880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:27 Heat of formation + Delta-G solvation = -185.288410 kcal Electronic energy + Delta-G solvation = -16283.009809 eV Core-core repulsion = 13472.542658 eV Total energy + Delta-G solvation = -2810.467150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95360 -38.58908 -37.32754 -35.87294 -33.64865 -32.62131 -31.11851 -28.50799 -25.91032 -25.10544 -24.01420 -22.21015 -21.20669 -18.62324 -18.07874 -18.00652 -17.44198 -16.94129 -16.49936 -16.40082 -16.01580 -15.54321 -14.95474 -14.38685 -14.38624 -14.06409 -13.55207 -13.37755 -12.97818 -12.91643 -12.71991 -12.48830 -12.22453 -12.09745 -11.79982 -11.59030 -11.42545 -11.22193 -11.14549 -10.80846 -10.57507 -10.14283 -8.22193 -6.33226 1.40419 1.40707 1.54632 2.36790 2.47777 3.01159 3.11333 3.23610 3.65054 3.75789 3.89952 3.98995 4.10076 4.14408 4.26079 4.43863 4.55811 4.63609 4.66666 4.72280 4.81657 4.87927 4.91949 5.01016 5.11254 5.15358 5.47943 5.67852 5.81185 5.99193 6.20461 6.33357 6.82375 6.89844 7.36076 8.90133 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.061663 B = 0.004254 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.969863 B = 6580.285193 C = 6796.974086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.095 4.095 11 C 0.068 3.932 12 O -0.383 6.383 13 C 0.053 3.947 14 H 0.084 0.916 15 C 0.048 3.952 16 O -0.394 6.394 17 C 0.052 3.948 18 C -0.176 4.176 19 C 0.105 3.895 20 H 0.069 0.931 21 O -0.572 6.572 22 H 0.265 0.735 23 H -0.002 1.002 24 H -0.003 1.003 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -21.441 -1.704 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.133 4.133 11 C -0.008 4.008 12 O -0.303 6.303 13 C -0.005 4.005 14 H 0.102 0.898 15 C -0.029 4.029 16 O -0.313 6.313 17 C -0.024 4.024 18 C -0.214 4.214 19 C 0.045 3.955 20 H 0.087 0.913 21 O -0.380 6.380 22 H 0.074 0.926 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.124 -20.912 -1.247 21.351 hybrid contribution 0.294 0.738 -0.424 0.900 sum 4.418 -20.174 -1.670 20.720 Atomic orbital electron populations 1.70095 1.07753 1.27847 1.51531 1.25976 0.95816 1.03362 0.94537 0.85360 0.78974 0.78559 0.77927 1.18766 1.20118 1.20200 1.21678 0.93557 0.92280 1.50839 0.92332 1.18932 0.94210 0.92462 0.95382 1.21381 0.98595 0.92119 1.01205 1.22619 0.91782 0.86252 1.00132 1.88006 1.33775 1.13471 1.95017 1.22948 0.96595 0.83694 0.97272 0.89799 1.22877 0.99311 0.84419 0.96272 1.87913 1.46327 1.17297 1.79805 1.22808 0.95661 0.91941 0.92018 1.22895 1.03584 0.96382 0.98533 1.21951 0.83724 0.93905 0.95876 0.91273 1.86597 1.23532 1.67472 1.60377 0.92629 0.98325 0.98444 0.92958 0.92766 0.92939 0.93298 0.89249 0.92616 0.86491 0.92453 0.89393 0.86837 0.75692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 0.05 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.10 -4.25 5.52 30.59 0.17 -4.08 16 11 C 0.07 2.54 5.75 71.98 0.41 2.95 16 12 O -0.38 -13.43 9.84 -137.90 -1.36 -14.79 16 13 C 0.05 1.45 2.59 30.68 0.08 1.53 16 14 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 15 C 0.05 1.31 6.32 72.02 0.45 1.77 16 16 O -0.39 -9.69 10.77 -148.98 -1.60 -11.30 16 17 C 0.05 0.86 6.69 72.01 0.48 1.34 16 18 C -0.18 -2.44 5.83 30.68 0.18 -2.26 16 19 C 0.10 2.18 3.52 30.71 0.11 2.29 16 20 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 21 O -0.57 -12.53 12.13 -137.90 -1.67 -14.20 16 22 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 23 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 27 H 0.05 1.85 8.09 -2.38 -0.02 1.83 16 28 H 0.05 1.76 7.96 -2.39 -0.02 1.74 16 29 H 0.09 2.46 7.96 -2.39 -0.02 2.44 16 30 H 0.06 1.62 7.82 -2.39 -0.02 1.60 16 31 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.39 4.49 9.08 -74.06 -0.67 3.81 16 Total: -1.00 -70.25 290.34 0.79 -69.46 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.39 Total: 6.84 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 2.73 Total: -26.06 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.28 Total: -56.89 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -4.63 Total: -40.29 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.25 0.79 -69.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686566880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.830 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds