Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46735 * 179.97438 * 11 10 9 13 13 C 1.42899 * 113.99785 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.52742 * 330.13028 * 13 12 11 15 15 C 1.53101 * 109.51949 * 90.31983 * 13 12 11 16 16 O 1.42906 * 109.41222 * 177.51311 * 15 13 12 17 17 C 1.42896 * 114.10027 * 298.83985 * 16 15 13 18 18 C 1.53097 * 109.41434 * 61.15906 * 17 16 15 19 19 C 1.53174 * 109.16382 * 302.38980 * 18 17 16 20 20 H 1.08995 * 109.54477 * 176.84535 * 19 18 17 21 21 O 1.42899 * 109.62227 * 297.07363 * 19 18 17 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 28 28 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 29 29 H 1.09004 * 109.47906 * 297.49483 * 15 13 12 30 30 H 1.08995 * 109.47772 * 57.52829 * 15 13 12 31 31 H 1.09004 * 109.48192 * 301.18236 * 17 16 15 32 32 H 1.09001 * 109.49429 * 181.14900 * 17 16 15 33 33 H 1.09000 * 109.51911 * 182.48750 * 18 17 16 34 34 H 1.09000 * 109.57289 * 62.33372 * 18 17 16 35 35 H 0.96705 * 113.99392 * 299.60032 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 8 2.4091 -6.0732 0.0006 13 6 1.7946 -7.3633 0.0017 14 1 0.8342 -7.3089 0.5143 15 6 1.5803 -7.8291 -1.4409 16 8 1.0190 -9.1433 -1.4373 17 6 1.8469 -10.1296 -0.8178 18 6 2.0719 -9.7563 0.6498 19 6 2.7040 -8.3629 0.7230 20 1 2.8155 -8.0674 1.7661 21 8 3.9861 -8.3839 0.0924 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 0.8541 -5.0446 0.8913 28 1 0.8535 -5.0451 -0.8886 29 1 0.8994 -7.1444 -1.9466 30 1 2.5364 -7.8436 -1.9640 31 1 2.8066 -10.1742 -1.3327 32 1 1.3583 -11.1024 -0.8746 33 1 2.7390 -10.4836 1.1125 34 1 1.1173 -9.7514 1.1759 35 1 4.6142 -8.9968 0.4987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686566881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = -160.928128 kcal Electronic energy + Delta-G solvation = -16281.682230 eV Core-core repulsion = 13472.271421 eV Total energy + Delta-G solvation = -2809.410809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.98332 -37.30288 -36.42044 -33.87170 -31.94559 -31.58117 -29.92734 -26.59972 -24.97581 -23.63166 -22.65116 -20.66852 -19.94316 -17.23036 -17.01661 -16.42592 -16.35222 -15.74016 -15.36179 -14.75014 -14.47265 -14.36211 -13.92246 -13.29240 -12.60469 -12.53113 -12.22170 -12.04095 -11.82189 -11.44048 -11.29450 -10.89466 -10.68224 -10.52183 -10.41287 -10.26467 -9.97187 -9.62667 -9.41838 -9.09070 -9.00048 -8.34094 -5.99438 -4.01597 3.33876 3.39634 3.43537 3.53308 4.01226 4.03469 4.47841 4.50055 4.69111 4.75657 4.86066 5.02401 5.22536 5.36589 5.38484 5.47148 5.57832 5.65172 5.71196 5.75262 5.90931 5.98761 6.20372 6.69579 6.70185 7.00831 7.10804 7.46265 7.60020 7.68003 7.79907 8.00211 8.43233 9.05063 9.62446 11.12176 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.061644 B = 0.004254 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.111786 B = 6579.774010 C = 6796.713534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.057 3.943 12 O -0.367 6.367 13 C 0.065 3.935 14 H 0.077 0.923 15 C 0.042 3.958 16 O -0.380 6.380 17 C 0.062 3.938 18 C -0.188 4.188 19 C 0.105 3.895 20 H 0.065 0.935 21 O -0.549 6.549 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -20.479 1.157 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.019 4.019 12 O -0.286 6.286 13 C 0.006 3.994 14 H 0.095 0.905 15 C -0.035 4.035 16 O -0.299 6.299 17 C -0.015 4.015 18 C -0.226 4.226 19 C 0.046 3.954 20 H 0.083 0.917 21 O -0.354 6.354 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.258 -19.914 0.695 20.191 hybrid contribution 0.568 0.541 0.592 0.983 sum 3.826 -19.373 1.287 19.790 Atomic orbital electron populations 1.69967 1.06075 1.26640 1.50939 1.25026 0.94867 0.99309 0.95291 0.86561 0.79834 0.83294 0.78127 1.20629 1.21230 1.19828 1.21226 0.93152 0.90856 1.50515 0.92513 1.19056 0.93916 0.91083 0.97339 1.21644 0.99624 0.91576 1.01589 1.22928 0.92270 0.87182 0.99500 1.88058 1.33442 1.12309 1.94825 1.22632 0.95390 0.84873 0.96508 0.90505 1.23060 1.00135 0.83655 0.96614 1.87930 1.45398 1.17393 1.79182 1.22507 0.95668 0.91846 0.91493 1.22942 1.02818 0.97695 0.99106 1.21934 0.83959 0.93090 0.96434 0.91709 1.86652 1.22656 1.66729 1.59336 0.92989 0.96450 0.96489 0.92494 0.92596 0.93730 0.93722 0.88547 0.91381 0.92430 0.88942 0.90125 0.89926 0.78111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.35 5.52 -26.73 -0.15 -2.50 16 11 C 0.06 1.06 5.75 37.16 0.21 1.27 16 12 O -0.37 -6.51 9.84 -46.89 -0.46 -6.97 16 13 C 0.06 0.91 2.59 -26.58 -0.07 0.85 16 14 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 15 C 0.04 0.58 6.32 37.21 0.24 0.82 16 16 O -0.38 -4.91 10.77 -35.23 -0.38 -5.29 16 17 C 0.06 0.59 6.70 37.21 0.25 0.84 16 18 C -0.19 -1.58 5.84 -26.59 -0.16 -1.74 16 19 C 0.11 1.20 3.51 -26.55 -0.09 1.10 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 O -0.55 -6.48 12.13 -46.89 -0.57 -7.05 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.04 0.79 7.96 -51.93 -0.41 0.38 16 29 H 0.10 1.31 7.96 -51.93 -0.41 0.89 16 30 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 31 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.37 2.55 9.09 45.56 0.41 2.96 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -32.84 290.36 -6.61 -39.44 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.97 Total: -2.24 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.32 Total: -12.71 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -1.41 Total: -19.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.84 -6.61 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686566881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.484 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds