Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46735 * 179.97438 * 11 10 9 13 13 C 1.42899 * 113.99785 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.52742 * 330.13028 * 13 12 11 15 15 C 1.53101 * 109.51949 * 90.31983 * 13 12 11 16 16 O 1.42906 * 109.41222 * 177.51311 * 15 13 12 17 17 C 1.42896 * 114.10027 * 298.83985 * 16 15 13 18 18 C 1.53097 * 109.41434 * 61.15906 * 17 16 15 19 19 C 1.53174 * 109.16382 * 302.38980 * 18 17 16 20 20 H 1.08995 * 109.54477 * 176.84535 * 19 18 17 21 21 O 1.42899 * 109.62227 * 297.07363 * 19 18 17 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 28 28 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 29 29 H 1.09004 * 109.47906 * 297.49483 * 15 13 12 30 30 H 1.08995 * 109.47772 * 57.52829 * 15 13 12 31 31 H 1.09004 * 109.48192 * 301.18236 * 17 16 15 32 32 H 1.09001 * 109.49429 * 181.14900 * 17 16 15 33 33 H 1.09000 * 109.51911 * 182.48750 * 18 17 16 34 34 H 1.09000 * 109.57289 * 62.33372 * 18 17 16 35 35 H 0.96705 * 113.99392 * 299.60032 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 8 2.4091 -6.0732 0.0006 13 6 1.7946 -7.3633 0.0017 14 1 0.8342 -7.3089 0.5143 15 6 1.5803 -7.8291 -1.4409 16 8 1.0190 -9.1433 -1.4373 17 6 1.8469 -10.1296 -0.8178 18 6 2.0719 -9.7563 0.6498 19 6 2.7040 -8.3629 0.7230 20 1 2.8155 -8.0674 1.7661 21 8 3.9861 -8.3839 0.0924 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 0.8541 -5.0446 0.8913 28 1 0.8535 -5.0451 -0.8886 29 1 0.8994 -7.1444 -1.9466 30 1 2.5364 -7.8436 -1.9640 31 1 2.8066 -10.1742 -1.3327 32 1 1.3583 -11.1024 -0.8746 33 1 2.7390 -10.4836 1.1125 34 1 1.1173 -9.7514 1.1759 35 1 4.6142 -8.9968 0.4987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686566881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = -185.237351 kcal Electronic energy + Delta-G solvation = -16282.736357 eV Core-core repulsion = 13472.271421 eV Total energy + Delta-G solvation = -2810.464936 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.95167 -38.58863 -37.32727 -35.87139 -33.64748 -32.62306 -31.11696 -28.50694 -25.90943 -25.10484 -24.01433 -22.21030 -21.20652 -18.62063 -18.08109 -18.00458 -17.44252 -16.93954 -16.50053 -16.40109 -16.01506 -15.54411 -14.95278 -14.38629 -14.37823 -14.06483 -13.55473 -13.37626 -12.97356 -12.91763 -12.70507 -12.49486 -12.22720 -12.11024 -11.79515 -11.58855 -11.42291 -11.23236 -11.14896 -10.80744 -10.56854 -10.14276 -8.21952 -6.33152 1.40462 1.42014 1.53417 2.36838 2.47819 3.01168 3.11462 3.23599 3.65026 3.75826 3.90055 3.99060 4.10008 4.14433 4.26088 4.43912 4.55798 4.63644 4.66668 4.72192 4.81661 4.87943 4.91965 5.01076 5.11292 5.15356 5.47763 5.67892 5.81186 5.99196 6.20453 6.33339 6.82261 6.89791 7.36114 8.90194 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.061644 B = 0.004254 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.111786 B = 6579.774010 C = 6796.713534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.095 4.095 11 C 0.068 3.932 12 O -0.383 6.383 13 C 0.053 3.947 14 H 0.084 0.916 15 C 0.049 3.951 16 O -0.394 6.394 17 C 0.052 3.948 18 C -0.176 4.176 19 C 0.105 3.895 20 H 0.069 0.931 21 O -0.571 6.571 22 H 0.265 0.735 23 H -0.003 1.003 24 H -0.002 1.002 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -21.427 1.697 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.133 4.133 11 C -0.008 4.008 12 O -0.303 6.303 13 C -0.005 4.005 14 H 0.102 0.898 15 C -0.029 4.029 16 O -0.313 6.313 17 C -0.024 4.024 18 C -0.214 4.214 19 C 0.045 3.955 20 H 0.087 0.913 21 O -0.380 6.380 22 H 0.074 0.926 23 H 0.015 0.985 24 H 0.017 0.983 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.133 -20.898 1.242 21.339 hybrid contribution 0.304 0.737 0.417 0.900 sum 4.437 -20.161 1.659 20.710 Atomic orbital electron populations 1.70087 1.07753 1.27923 1.51471 1.25975 0.95815 1.03359 0.94522 0.85412 0.78627 0.78239 0.78566 1.19702 1.20469 1.18840 1.21651 0.93562 0.92290 1.50946 0.92318 1.18931 0.94205 0.92453 0.95372 1.21381 0.98596 0.92116 1.01206 1.22620 0.91781 0.86255 1.00131 1.88006 1.33774 1.13473 1.95018 1.22952 0.96594 0.83698 0.97272 0.89803 1.22879 0.99311 0.84415 0.96271 1.87913 1.46295 1.17289 1.79848 1.22808 0.95646 0.91942 0.92024 1.22891 1.03581 0.96383 0.98530 1.21949 0.83729 0.93899 0.95888 0.91283 1.86597 1.23347 1.67912 1.60100 0.92623 0.98457 0.98330 0.92938 0.92777 0.92929 0.93309 0.89250 0.92614 0.92460 0.86488 0.86856 0.89384 0.75691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.10 -4.25 5.52 30.60 0.17 -4.08 16 11 C 0.07 2.54 5.75 71.98 0.41 2.95 16 12 O -0.38 -13.43 9.84 -137.83 -1.36 -14.79 16 13 C 0.05 1.45 2.59 30.69 0.08 1.53 16 14 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 15 C 0.05 1.31 6.32 72.02 0.46 1.77 16 16 O -0.39 -9.70 10.77 -148.98 -1.60 -11.30 16 17 C 0.05 0.86 6.70 72.01 0.48 1.35 16 18 C -0.18 -2.44 5.84 30.69 0.18 -2.26 16 19 C 0.10 2.18 3.51 30.71 0.11 2.29 16 20 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 21 O -0.57 -12.53 12.13 -137.83 -1.67 -14.20 16 22 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 23 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.05 1.86 8.09 -2.39 -0.02 1.84 16 28 H 0.05 1.75 7.96 -2.39 -0.02 1.74 16 29 H 0.09 2.46 7.96 -2.39 -0.02 2.44 16 30 H 0.06 1.62 7.82 -2.39 -0.02 1.60 16 31 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.39 4.49 9.09 -74.05 -0.67 3.82 16 Total: -1.00 -70.22 290.36 0.80 -69.43 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.39 Total: 6.96 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 2.73 Total: -26.08 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -4.63 Total: -40.29 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.22 0.80 -69.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686566881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.812 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds