Wall clock time and date at job start Mon Mar 30 2020 03:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46913 * 2 1 4 4 C 1.52992 * 109.47331 * 239.99364 * 2 1 3 5 5 C 1.50700 * 109.47092 * 174.99708 * 4 2 1 6 6 H 1.08000 * 119.99964 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00195 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00205 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47082 * 89.99618 * 9 7 5 11 11 H 1.48492 * 109.47346 * 209.99944 * 9 7 5 12 12 H 1.48504 * 109.47047 * 330.00157 * 9 7 5 13 13 O 1.42900 * 109.46672 * 119.99387 * 2 1 3 14 14 C 1.42902 * 114.00015 * 270.46668 * 13 2 1 15 15 H 1.09000 * 109.57627 * 337.77107 * 14 13 2 16 16 C 1.53087 * 109.52140 * 97.93332 * 14 13 2 17 17 O 1.42909 * 109.41852 * 62.29714 * 16 14 13 18 18 C 1.42903 * 114.09446 * 61.15451 * 17 16 14 19 19 C 1.53086 * 109.41688 * 298.84502 * 18 17 16 20 20 C 1.53179 * 109.16530 * 57.61419 * 19 18 17 21 21 H 1.08995 * 109.54438 * 62.96969 * 20 19 18 22 22 O 1.42895 * 109.54287 * 183.15246 * 20 19 18 23 23 H 1.09001 * 109.47410 * 305.57996 * 1 2 3 24 24 H 1.08997 * 109.46964 * 65.57520 * 1 2 3 25 25 H 1.09002 * 109.47075 * 185.57158 * 1 2 3 26 26 H 1.08995 * 109.47244 * 294.99897 * 4 2 1 27 27 H 1.09008 * 109.46947 * 55.00405 * 4 2 1 28 28 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47974 * 302.31235 * 16 14 13 30 30 H 1.09006 * 109.48201 * 182.27641 * 16 14 13 31 31 H 1.09002 * 109.47358 * 178.85817 * 18 17 16 32 32 H 1.09001 * 109.48676 * 58.83934 * 18 17 16 33 33 H 1.08995 * 109.52321 * 297.70227 * 19 18 17 34 34 H 1.09004 * 109.52053 * 177.51704 * 19 18 17 35 35 H 0.96703 * 114.00326 * 299.99682 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0860 -0.5391 7 6 4.2305 -1.1936 -2.3575 8 7 5.5412 -1.1012 -2.4126 9 14 3.3017 -2.1090 -3.6950 10 1 2.9410 -1.1642 -4.7825 11 1 4.1601 -3.1898 -4.2428 12 1 2.0655 -2.7006 -3.1230 13 8 2.0062 -0.6735 1.1669 14 6 2.1899 0.1813 2.2972 15 1 2.3107 1.2110 1.9605 16 6 0.9696 0.0834 3.2163 17 8 0.8471 -1.2548 3.7024 18 6 1.9649 -1.7000 4.4735 19 6 3.2252 -1.6737 3.6049 20 6 3.4383 -0.2540 3.0708 21 1 3.6084 0.4274 3.9043 22 8 4.5709 -0.2360 2.1997 23 1 -0.3634 0.5979 0.8358 24 1 -0.3633 0.4249 -0.9357 25 1 -0.3633 -1.0228 0.0998 26 1 1.7517 -1.7716 -1.2053 27 1 1.6054 -0.2618 -2.1369 28 1 6.0257 -1.5080 -3.1480 29 1 0.0721 0.3512 2.6586 30 1 1.0923 0.7659 4.0574 31 1 1.7843 -2.7170 4.8216 32 1 2.1006 -1.0410 5.3311 33 1 3.1060 -2.3633 2.7692 34 1 4.0863 -1.9708 4.2035 35 1 5.3969 -0.5080 2.6228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686576356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:22 Heat of formation + Delta-G solvation = -145.763866 kcal Electronic energy + Delta-G solvation = -17394.864635 eV Core-core repulsion = 14586.111398 eV Total energy + Delta-G solvation = -2808.753237 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.63011 -36.96572 -36.13148 -33.07240 -31.64994 -31.16216 -29.65136 -27.78634 -24.27610 -23.31861 -22.77088 -20.22430 -19.76074 -17.14769 -16.51673 -16.33396 -16.08526 -15.37920 -15.00910 -14.43242 -14.06830 -13.62047 -13.25285 -12.87962 -12.71903 -12.32875 -12.07226 -11.78276 -11.58407 -11.56584 -11.21641 -10.85883 -10.61547 -10.50856 -10.09313 -9.84299 -9.63028 -9.51871 -9.36407 -8.96692 -8.52643 -8.36162 -5.84262 -3.78464 3.40092 3.47742 3.52801 3.89268 4.39508 4.47570 4.60759 4.87923 5.01999 5.07367 5.21973 5.41957 5.46451 5.52987 5.57321 5.62469 5.78948 5.80985 5.92882 5.97111 6.08957 6.12751 6.31243 6.53696 6.68359 6.82808 7.19535 7.28595 7.40025 7.93725 8.10065 8.20490 8.77176 9.30335 9.78181 11.29654 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.008646 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.744691 B = 3237.725209 C = 3724.986488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 H 0.051 0.949 4 C -0.013 4.013 5 C -0.496 4.496 6 H 0.083 0.917 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 O -0.333 6.333 14 C 0.062 3.938 15 H 0.070 0.930 16 C 0.044 3.956 17 O -0.371 6.371 18 C 0.065 3.935 19 C -0.186 4.186 20 C 0.106 3.894 21 H 0.052 0.948 22 O -0.532 6.532 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.258 0.742 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 2.222 13.562 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.050 4.050 5 C -0.535 4.535 6 H 0.101 0.899 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.191 1.191 13 O -0.251 6.251 14 C 0.002 3.998 15 H 0.088 0.912 16 C -0.033 4.033 17 O -0.289 6.289 18 C -0.012 4.012 19 C -0.224 4.224 20 C 0.047 3.953 21 H 0.070 0.930 22 O -0.335 6.335 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.741 2.050 12.979 15.250 hybrid contribution 0.271 -0.279 -0.303 0.493 sum -7.470 1.771 12.676 14.820 Atomic orbital electron populations 1.22489 0.98281 1.01901 1.00678 1.22234 0.90573 0.95996 0.87043 0.93107 1.19709 0.98111 0.96219 0.90937 1.21146 0.89387 1.34006 1.08928 0.89922 1.24985 0.94686 0.96163 0.97832 1.69925 1.06388 1.46210 1.32182 0.86911 0.80401 0.80108 0.82625 1.20601 1.21582 1.19145 1.88103 1.85953 1.32903 1.18160 1.22684 0.92467 0.95418 0.89195 0.91185 1.23229 0.99392 0.84243 0.96458 1.87955 1.40630 1.29752 1.70549 1.22502 0.86241 1.00016 0.92401 1.22874 0.98244 0.99705 1.01539 1.21850 0.87355 0.94897 0.91243 0.93016 1.86876 1.17332 1.90481 1.38828 0.93880 0.92277 0.92186 0.95875 0.96064 0.93193 0.88177 0.93019 0.88952 0.93794 0.88706 0.91314 0.78469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.27 37.16 0.34 -2.67 16 2 C 0.10 2.11 2.65 -26.74 -0.07 2.04 16 3 H 0.05 1.08 7.33 -51.93 -0.38 0.70 16 4 C -0.01 -0.32 3.75 -27.89 -0.10 -0.42 16 5 C -0.50 -14.85 9.43 -34.44 -0.32 -15.17 16 6 H 0.08 2.71 7.99 -52.49 -0.42 2.29 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -29.04 13.96 55.43 0.77 -28.26 16 9 Si 0.87 22.66 27.47 -169.99 -4.67 17.99 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 13 O -0.33 -7.18 8.64 -55.76 -0.48 -7.66 16 14 C 0.06 1.06 2.68 -26.59 -0.07 0.99 16 15 H 0.07 1.18 7.27 -51.93 -0.38 0.80 16 16 C 0.04 0.62 6.44 37.20 0.24 0.86 16 17 O -0.37 -5.73 10.70 -42.72 -0.46 -6.19 16 18 C 0.07 0.82 6.84 37.20 0.25 1.08 16 19 C -0.19 -2.66 5.61 -26.59 -0.15 -2.81 16 20 C 0.11 1.67 3.34 -26.54 -0.09 1.58 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 O -0.53 -10.14 13.17 -46.87 -0.62 -10.76 16 23 H 0.04 0.62 6.33 -51.93 -0.33 0.29 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 27 H 0.02 0.52 7.57 -51.92 -0.39 0.13 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.10 1.34 6.11 -51.93 -0.32 1.02 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 1.71 7.83 -51.93 -0.41 1.30 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.37 5.26 9.08 45.56 0.41 5.68 16 LS Contribution 282.19 15.07 4.25 4.25 Total: -1.00 -35.07 282.19 -5.98 -41.05 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.71 Total: 2.29 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.07 Total: -12.72 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 0.77 Total: -28.26 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.56 Total: -24.60 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.07 -5.98 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686576356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.716 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds