Wall clock time and date at job start Mon Mar 30 2020 03:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46913 * 2 1 4 4 C 1.52992 * 109.47331 * 239.99364 * 2 1 3 5 5 C 1.50700 * 109.47092 * 174.99708 * 4 2 1 6 6 H 1.08000 * 119.99964 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00195 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00205 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47082 * 89.99618 * 9 7 5 11 11 H 1.48492 * 109.47346 * 209.99944 * 9 7 5 12 12 H 1.48504 * 109.47047 * 330.00157 * 9 7 5 13 13 O 1.42900 * 109.46672 * 119.99387 * 2 1 3 14 14 C 1.42902 * 114.00015 * 270.46668 * 13 2 1 15 15 H 1.09000 * 109.57627 * 337.77107 * 14 13 2 16 16 C 1.53087 * 109.52140 * 97.93332 * 14 13 2 17 17 O 1.42909 * 109.41852 * 62.29714 * 16 14 13 18 18 C 1.42903 * 114.09446 * 61.15451 * 17 16 14 19 19 C 1.53086 * 109.41688 * 298.84502 * 18 17 16 20 20 C 1.53179 * 109.16530 * 57.61419 * 19 18 17 21 21 H 1.08995 * 109.54438 * 62.96969 * 20 19 18 22 22 O 1.42895 * 109.54287 * 183.15246 * 20 19 18 23 23 H 1.09001 * 109.47410 * 305.57996 * 1 2 3 24 24 H 1.08997 * 109.46964 * 65.57520 * 1 2 3 25 25 H 1.09002 * 109.47075 * 185.57158 * 1 2 3 26 26 H 1.08995 * 109.47244 * 294.99897 * 4 2 1 27 27 H 1.09008 * 109.46947 * 55.00405 * 4 2 1 28 28 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47974 * 302.31235 * 16 14 13 30 30 H 1.09006 * 109.48201 * 182.27641 * 16 14 13 31 31 H 1.09002 * 109.47358 * 178.85817 * 18 17 16 32 32 H 1.09001 * 109.48676 * 58.83934 * 18 17 16 33 33 H 1.08995 * 109.52321 * 297.70227 * 19 18 17 34 34 H 1.09004 * 109.52053 * 177.51704 * 19 18 17 35 35 H 0.96703 * 114.00326 * 299.99682 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0860 -0.5391 7 6 4.2305 -1.1936 -2.3575 8 7 5.5412 -1.1012 -2.4126 9 14 3.3017 -2.1090 -3.6950 10 1 2.9410 -1.1642 -4.7825 11 1 4.1601 -3.1898 -4.2428 12 1 2.0655 -2.7006 -3.1230 13 8 2.0062 -0.6735 1.1669 14 6 2.1899 0.1813 2.2972 15 1 2.3107 1.2110 1.9605 16 6 0.9696 0.0834 3.2163 17 8 0.8471 -1.2548 3.7024 18 6 1.9649 -1.7000 4.4735 19 6 3.2252 -1.6737 3.6049 20 6 3.4383 -0.2540 3.0708 21 1 3.6084 0.4274 3.9043 22 8 4.5709 -0.2360 2.1997 23 1 -0.3634 0.5979 0.8358 24 1 -0.3633 0.4249 -0.9357 25 1 -0.3633 -1.0228 0.0998 26 1 1.7517 -1.7716 -1.2053 27 1 1.6054 -0.2618 -2.1369 28 1 6.0257 -1.5080 -3.1480 29 1 0.0721 0.3512 2.6586 30 1 1.0923 0.7659 4.0574 31 1 1.7843 -2.7170 4.8216 32 1 2.1006 -1.0410 5.3311 33 1 3.1060 -2.3633 2.7692 34 1 4.0863 -1.9708 4.2035 35 1 5.3969 -0.5080 2.6228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686576356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:21 Heat of formation + Delta-G solvation = -173.521720 kcal Electronic energy + Delta-G solvation = -17396.068306 eV Core-core repulsion = 14586.111398 eV Total energy + Delta-G solvation = -2809.956908 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85738 -38.42338 -37.46596 -35.12380 -33.41888 -32.45530 -30.94884 -29.68588 -25.42080 -24.80116 -24.38633 -21.94235 -21.09075 -18.84184 -18.42416 -17.65818 -17.33772 -16.62605 -16.37337 -16.19587 -15.56666 -14.94774 -14.71049 -14.66912 -14.11896 -13.93296 -13.59688 -13.42314 -13.34878 -12.81271 -12.55270 -12.48123 -12.40640 -11.91918 -11.69474 -11.45474 -11.31553 -11.16727 -10.85935 -10.72784 -10.69877 -9.94887 -8.19216 -6.19378 1.33843 1.37260 1.49024 2.40470 2.74022 3.07514 3.19127 3.30632 3.76102 3.87222 3.94923 4.13869 4.16319 4.35240 4.36881 4.44386 4.53674 4.54857 4.66785 4.71125 4.84513 4.92599 5.02449 5.08075 5.19575 5.24533 5.39041 5.45004 5.72618 6.22952 6.41296 6.67748 6.88523 6.96563 7.40798 8.98080 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.008646 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.744691 B = 3237.725209 C = 3724.986488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 H 0.041 0.959 4 C -0.012 4.012 5 C -0.503 4.503 6 H 0.036 0.964 7 C -0.002 4.002 8 N -0.954 5.954 9 Si 0.945 3.055 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.253 1.253 13 O -0.366 6.366 14 C 0.047 3.953 15 H 0.065 0.935 16 C 0.051 3.949 17 O -0.394 6.394 18 C 0.064 3.936 19 C -0.179 4.179 20 C 0.097 3.903 21 H 0.091 0.909 22 O -0.575 6.575 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.013 0.987 27 H 0.035 0.965 28 H 0.261 0.739 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 2.292 14.538 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.060 0.940 4 C -0.050 4.050 5 C -0.541 4.541 6 H 0.054 0.946 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.769 3.231 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.177 1.177 13 O -0.285 6.285 14 C -0.011 4.011 15 H 0.083 0.917 16 C -0.026 4.026 17 O -0.313 6.313 18 C -0.012 4.012 19 C -0.217 4.217 20 C 0.038 3.962 21 H 0.109 0.891 22 O -0.382 6.382 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.851 2.130 13.979 17.234 hybrid contribution 1.041 -0.253 -0.500 1.182 sum -8.810 1.877 13.480 16.212 Atomic orbital electron populations 1.22347 0.94533 1.02410 1.02790 1.22107 0.93371 0.94565 0.85799 0.94045 1.19685 0.95011 0.96295 0.93974 1.21348 0.91920 1.33226 1.07610 0.94559 1.25962 0.95630 0.97297 1.00789 1.70093 1.08375 1.47669 1.33432 0.85736 0.79200 0.78847 0.79291 1.18756 1.21208 1.17730 1.88034 1.86609 1.34579 1.19275 1.23086 0.94897 0.94486 0.88664 0.91750 1.23233 0.97767 0.84581 0.96988 1.87923 1.41711 1.30556 1.71064 1.22694 0.84301 1.01752 0.92448 1.22798 1.00707 0.97674 1.00568 1.22175 0.85788 0.96632 0.91605 0.89127 1.86831 1.19160 1.90870 1.41320 0.90983 0.90807 0.92598 0.96863 0.94665 0.92996 0.87656 0.89303 0.87584 0.90343 0.93490 0.88660 0.76789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 9.27 71.98 0.67 -4.59 16 2 C 0.10 4.23 2.65 30.59 0.08 4.31 16 3 H 0.04 1.79 7.33 -2.38 -0.02 1.78 16 4 C -0.01 -0.63 3.75 29.85 0.11 -0.52 16 5 C -0.50 -31.14 9.43 25.60 0.24 -30.89 16 6 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 7 C 0.00 -0.10 5.47 84.66 0.46 0.36 16 8 N -0.95 -63.05 13.96 21.45 0.30 -62.75 16 9 Si 0.95 47.06 27.47 68.60 1.88 48.94 16 10 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.25 -11.97 6.54 99.48 0.65 -11.32 16 13 O -0.37 -16.01 8.64 -129.35 -1.12 -17.13 16 14 C 0.05 1.60 2.68 30.69 0.08 1.68 16 15 H 0.06 2.17 7.27 -2.39 -0.02 2.15 16 16 C 0.05 1.30 6.44 72.01 0.46 1.76 16 17 O -0.39 -11.23 10.70 -141.82 -1.52 -12.75 16 18 C 0.06 1.44 6.84 72.01 0.49 1.94 16 19 C -0.18 -4.99 5.61 30.68 0.17 -4.82 16 20 C 0.10 2.98 3.34 30.72 0.10 3.08 16 21 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 22 O -0.58 -22.87 13.17 -137.85 -1.82 -24.68 16 23 H 0.07 1.88 6.33 -2.39 -0.02 1.87 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 27 H 0.04 1.68 7.57 -2.38 -0.02 1.66 16 28 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 29 H 0.11 2.51 6.11 -2.39 -0.01 2.50 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.75 7.83 -2.39 -0.02 1.73 16 34 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.38 11.50 9.08 -74.06 -0.67 10.83 16 Total: -1.00 -79.29 282.19 0.95 -78.33 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.34 Total: 17.74 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 2.88 Total: -27.69 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.30 Total: -62.75 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -4.45 Total: -54.57 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.88 Total: 48.94 kcal Total: -79.29 0.95 -78.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686576356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.189 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds