Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47098 * 2 1 4 4 C 1.53004 * 109.46901 * 240.00380 * 2 1 3 5 5 C 1.50702 * 109.46980 * 175.00267 * 4 2 1 6 6 H 1.07996 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99786 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00045 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00301 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47034 * 89.99989 * 9 7 5 11 11 H 1.48498 * 109.47181 * 210.00041 * 9 7 5 12 12 H 1.48496 * 109.46730 * 330.00380 * 9 7 5 13 13 O 1.42891 * 109.47203 * 120.00287 * 2 1 3 14 14 C 1.42902 * 114.00202 * 269.99883 * 13 2 1 15 15 H 1.09000 * 109.56774 * 29.84266 * 14 13 2 16 16 C 1.53104 * 109.59743 * 269.72258 * 14 13 2 17 17 O 1.42905 * 109.48652 * 182.57454 * 16 14 13 18 18 C 1.42899 * 114.09676 * 61.11043 * 17 16 14 19 19 C 1.53087 * 109.41737 * 298.84350 * 18 17 16 20 20 C 1.53177 * 109.52339 * 149.99837 * 14 13 2 21 21 H 1.09002 * 109.54459 * 296.75505 * 20 14 13 22 22 O 1.42899 * 109.54477 * 56.93228 * 20 14 13 23 23 H 1.09002 * 109.47004 * 59.99232 * 1 2 3 24 24 H 1.08993 * 109.47417 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46671 * 300.00151 * 1 2 3 26 26 H 1.09002 * 109.46700 * 294.99805 * 4 2 1 27 27 H 1.09000 * 109.47514 * 54.99658 * 4 2 1 28 28 H 0.96994 * 120.00000 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.48063 * 62.54985 * 16 14 13 30 30 H 1.08999 * 109.41871 * 302.56251 * 16 14 13 31 31 H 1.09001 * 109.47977 * 178.85637 * 18 17 16 32 32 H 1.09010 * 109.48931 * 58.83347 * 18 17 16 33 33 H 1.08997 * 109.52133 * 297.69769 * 19 18 17 34 34 H 1.09010 * 109.57321 * 177.54282 * 19 18 17 35 35 H 0.96698 * 114.00142 * 179.82207 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0856 -0.5397 7 6 4.2303 -1.1926 -2.3584 8 7 5.5410 -1.0994 -2.4141 9 14 3.3013 -2.1076 -3.6961 10 1 2.9397 -1.1623 -4.7828 11 1 4.1601 -3.1876 -4.2450 12 1 2.0658 -2.7001 -3.1239 13 8 2.0064 -0.6737 1.1667 14 6 2.2002 0.1828 2.2940 15 1 1.4965 1.0139 2.2463 16 6 3.6318 0.7255 2.2866 17 8 3.8413 1.5335 3.4465 18 6 3.6865 0.8320 4.6818 19 6 2.2565 0.2955 4.7866 20 6 1.9697 -0.6095 3.5845 21 1 0.9351 -0.9504 3.6233 22 8 2.8461 -1.7378 3.6157 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1371 28 1 6.0253 -1.5061 -3.1496 29 1 3.7876 1.3275 1.3913 30 1 4.3350 -0.1072 2.2917 31 1 3.8819 1.5107 5.5121 32 1 4.3904 0.0005 4.7186 33 1 1.5542 1.1290 4.7909 34 1 2.1479 -0.2772 5.7078 35 1 2.7559 -2.2841 4.4084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686576359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -150.773515 kcal Electronic energy + Delta-G solvation = -17189.955912 eV Core-core repulsion = 14380.985440 eV Total energy + Delta-G solvation = -2808.970472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67884 -37.25637 -36.12940 -33.19384 -31.73019 -31.40663 -29.31731 -27.87589 -24.62899 -23.50536 -22.53748 -20.22035 -19.89255 -16.93873 -16.89819 -16.55176 -15.94086 -15.56515 -14.98838 -14.50553 -14.16242 -13.68760 -13.26793 -13.09821 -12.55367 -12.29887 -12.12298 -11.90093 -11.73019 -11.65375 -11.46004 -11.08372 -10.65004 -10.48454 -10.24397 -10.02408 -9.78421 -9.60402 -9.28705 -9.14121 -8.55859 -8.45085 -5.94310 -3.90444 3.35607 3.43532 3.47757 3.88923 4.32278 4.37028 4.53033 4.77359 4.95344 5.05245 5.18789 5.36005 5.41244 5.49186 5.62712 5.65717 5.74943 5.81622 5.91707 5.93208 5.98315 6.18379 6.29760 6.49732 6.59021 6.72684 7.12008 7.27465 7.41446 7.77719 7.84571 8.09964 8.63333 9.11119 9.67457 11.19331 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.007643 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.164376 B = 3662.807251 C = 4024.087975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.053 0.947 4 C -0.012 4.012 5 C -0.506 4.506 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.266 1.266 13 O -0.342 6.342 14 C 0.069 3.931 15 H 0.069 0.931 16 C 0.043 3.957 17 O -0.383 6.383 18 C 0.062 3.938 19 C -0.187 4.187 20 C 0.106 3.894 21 H 0.059 0.941 22 O -0.543 6.543 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.261 0.739 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 2.552 13.581 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.036 3.964 3 H 0.071 0.929 4 C -0.050 4.050 5 C -0.544 4.544 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.191 1.191 13 O -0.260 6.260 14 C 0.010 3.990 15 H 0.086 0.914 16 C -0.033 4.033 17 O -0.302 6.302 18 C -0.015 4.015 19 C -0.225 4.225 20 C 0.047 3.953 21 H 0.077 0.923 22 O -0.347 6.347 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.448 2.742 12.872 15.639 hybrid contribution -0.774 -0.749 -0.187 1.093 sum -9.223 1.993 12.685 15.810 Atomic orbital electron populations 1.22382 0.98060 1.01954 1.00814 1.22243 0.90852 0.96313 0.86947 0.92863 1.19708 0.97917 0.96364 0.90962 1.21027 0.89482 1.34770 1.09123 0.90819 1.24998 0.94731 0.95942 0.97909 1.69914 1.06464 1.45738 1.32268 0.86827 0.80336 0.80045 0.82355 1.20455 1.21439 1.19070 1.88153 1.86111 1.32934 1.18825 1.22550 0.97276 0.92417 0.86796 0.91352 1.23127 0.96377 0.96144 0.87670 1.87911 1.91156 1.37355 1.13811 1.22460 0.94843 0.96977 0.87244 1.22940 0.99686 1.00968 0.98886 1.21925 0.93416 0.86479 0.93488 0.92287 1.86753 1.62583 1.39548 1.45802 0.92053 0.92333 0.93832 0.95661 0.95770 0.92904 0.88098 0.90942 0.89310 0.92468 0.90273 0.90433 0.78586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.53 37.16 0.35 -2.54 16 2 C 0.09 1.94 2.46 -26.73 -0.07 1.88 16 3 H 0.05 1.08 7.69 -51.93 -0.40 0.69 16 4 C -0.01 -0.30 3.75 -27.88 -0.10 -0.41 16 5 C -0.51 -14.74 9.43 -34.44 -0.32 -15.07 16 6 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 7 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -28.54 13.96 55.43 0.77 -27.76 16 9 Si 0.88 22.24 27.47 -169.99 -4.67 17.58 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 O -0.34 -7.29 9.24 -46.88 -0.43 -7.72 16 14 C 0.07 1.20 2.38 -26.59 -0.06 1.14 16 15 H 0.07 1.08 7.64 -51.93 -0.40 0.69 16 16 C 0.04 0.82 6.32 37.21 0.24 1.05 16 17 O -0.38 -6.42 10.77 -35.23 -0.38 -6.80 16 18 C 0.06 0.79 6.69 37.20 0.25 1.04 16 19 C -0.19 -2.05 5.84 -26.59 -0.16 -2.20 16 20 C 0.11 1.51 3.51 -26.55 -0.09 1.41 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 O -0.54 -8.35 12.13 -46.88 -0.57 -8.92 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.62 7.97 -51.93 -0.41 0.21 16 26 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 27 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.10 2.02 8.03 -51.93 -0.42 1.61 16 30 H 0.07 1.53 7.82 -51.93 -0.41 1.13 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.75 7.82 -51.92 -0.41 0.34 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 35 H 0.37 3.65 9.09 45.56 0.41 4.06 16 LS Contribution 285.67 15.07 4.30 4.30 Total: -1.00 -33.81 285.67 -5.95 -39.76 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.91 Total: 1.43 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.07 Total: -11.87 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.77 Total: -27.76 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.38 Total: -23.44 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.81 -5.95 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686576359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.016 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds