Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47098 * 2 1 4 4 C 1.53004 * 109.46901 * 240.00380 * 2 1 3 5 5 C 1.50702 * 109.46980 * 175.00267 * 4 2 1 6 6 H 1.07996 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99786 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00045 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00301 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47034 * 89.99989 * 9 7 5 11 11 H 1.48498 * 109.47181 * 210.00041 * 9 7 5 12 12 H 1.48496 * 109.46730 * 330.00380 * 9 7 5 13 13 O 1.42891 * 109.47203 * 120.00287 * 2 1 3 14 14 C 1.42902 * 114.00202 * 269.99883 * 13 2 1 15 15 H 1.09000 * 109.56774 * 29.84266 * 14 13 2 16 16 C 1.53104 * 109.59743 * 269.72258 * 14 13 2 17 17 O 1.42905 * 109.48652 * 182.57454 * 16 14 13 18 18 C 1.42899 * 114.09676 * 61.11043 * 17 16 14 19 19 C 1.53087 * 109.41737 * 298.84350 * 18 17 16 20 20 C 1.53177 * 109.52339 * 149.99837 * 14 13 2 21 21 H 1.09002 * 109.54459 * 296.75505 * 20 14 13 22 22 O 1.42899 * 109.54477 * 56.93228 * 20 14 13 23 23 H 1.09002 * 109.47004 * 59.99232 * 1 2 3 24 24 H 1.08993 * 109.47417 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46671 * 300.00151 * 1 2 3 26 26 H 1.09002 * 109.46700 * 294.99805 * 4 2 1 27 27 H 1.09000 * 109.47514 * 54.99658 * 4 2 1 28 28 H 0.96994 * 120.00000 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.48063 * 62.54985 * 16 14 13 30 30 H 1.08999 * 109.41871 * 302.56251 * 16 14 13 31 31 H 1.09001 * 109.47977 * 178.85637 * 18 17 16 32 32 H 1.09010 * 109.48931 * 58.83347 * 18 17 16 33 33 H 1.08997 * 109.52133 * 297.69769 * 19 18 17 34 34 H 1.09010 * 109.57321 * 177.54282 * 19 18 17 35 35 H 0.96698 * 114.00142 * 179.82207 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0856 -0.5397 7 6 4.2303 -1.1926 -2.3584 8 7 5.5410 -1.0994 -2.4141 9 14 3.3013 -2.1076 -3.6961 10 1 2.9397 -1.1623 -4.7828 11 1 4.1601 -3.1876 -4.2450 12 1 2.0658 -2.7001 -3.1239 13 8 2.0064 -0.6737 1.1667 14 6 2.2002 0.1828 2.2940 15 1 1.4965 1.0139 2.2463 16 6 3.6318 0.7255 2.2866 17 8 3.8413 1.5335 3.4465 18 6 3.6865 0.8320 4.6818 19 6 2.2565 0.2955 4.7866 20 6 1.9697 -0.6095 3.5845 21 1 0.9351 -0.9504 3.6233 22 8 2.8461 -1.7378 3.6157 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1371 28 1 6.0253 -1.5061 -3.1496 29 1 3.7876 1.3275 1.3913 30 1 4.3350 -0.1072 2.2917 31 1 3.8819 1.5107 5.5121 32 1 4.3904 0.0005 4.7186 33 1 1.5542 1.1290 4.7909 34 1 2.1479 -0.2772 5.7078 35 1 2.7559 -2.2841 4.4084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686576359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -177.501928 kcal Electronic energy + Delta-G solvation = -17191.114943 eV Core-core repulsion = 14380.985440 eV Total energy + Delta-G solvation = -2810.129503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94645 -38.75492 -37.32797 -35.20568 -33.49410 -32.55767 -30.76859 -29.68178 -25.89022 -25.03796 -24.13002 -21.79304 -21.24793 -18.93093 -18.16217 -18.04120 -17.26168 -16.89362 -16.53835 -16.01261 -15.70420 -15.12179 -14.66372 -14.61725 -14.33475 -13.76887 -13.59286 -13.45050 -13.23425 -12.98797 -12.76279 -12.47635 -12.35041 -12.08252 -11.80152 -11.62466 -11.34612 -11.20228 -11.12242 -10.74225 -10.67022 -10.01002 -8.24378 -6.26536 1.34812 1.38423 1.50092 2.38578 2.56498 3.05046 3.14649 3.28854 3.69710 3.83218 3.93369 4.01363 4.11992 4.16681 4.33944 4.46769 4.51928 4.65990 4.69858 4.73083 4.84146 4.89217 5.02592 5.05643 5.11559 5.17640 5.29115 5.40767 5.68563 6.08052 6.31133 6.56846 6.79544 6.96587 7.35228 8.92850 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.007643 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.164376 B = 3662.807251 C = 4024.087975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 H 0.045 0.955 4 C -0.012 4.012 5 C -0.514 4.514 6 H 0.030 0.970 7 C -0.002 4.002 8 N -0.955 5.955 9 Si 0.951 3.049 10 H -0.261 1.261 11 H -0.287 1.287 12 H -0.249 1.249 13 O -0.371 6.371 14 C 0.063 3.937 15 H 0.088 0.912 16 C 0.055 3.945 17 O -0.396 6.396 18 C 0.049 3.951 19 C -0.173 4.173 20 C 0.106 3.894 21 H 0.079 0.921 22 O -0.575 6.575 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.019 0.981 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.121 0.879 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 2.363 14.554 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.064 0.936 4 C -0.050 4.050 5 C -0.553 4.553 6 H 0.049 0.951 7 C -0.198 4.198 8 N -0.596 5.596 9 Si 0.774 3.226 10 H -0.186 1.186 11 H -0.213 1.213 12 H -0.173 1.173 13 O -0.291 6.291 14 C 0.004 3.996 15 H 0.106 0.894 16 C -0.022 4.022 17 O -0.315 6.315 18 C -0.027 4.027 19 C -0.211 4.211 20 C 0.047 3.953 21 H 0.097 0.903 22 O -0.383 6.383 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.139 0.861 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.384 2.558 13.881 18.134 hybrid contribution 0.256 -0.639 -0.355 0.775 sum -11.129 1.919 13.526 17.620 Atomic orbital electron populations 1.22252 0.94057 1.02720 1.02966 1.22173 0.93821 0.95018 0.85562 0.93639 1.19692 0.94657 0.96649 0.93975 1.21351 0.92205 1.33844 1.07856 0.95134 1.26034 0.95654 0.97126 1.00951 1.70089 1.08577 1.47390 1.33577 0.85647 0.79212 0.78724 0.78973 1.18618 1.21268 1.17275 1.88092 1.86563 1.34512 1.19888 1.22806 0.96082 0.93415 0.87294 0.89383 1.22763 0.97152 0.94378 0.87950 1.87880 1.91495 1.37621 1.14526 1.22836 0.96396 0.97476 0.86027 1.22885 0.98157 1.01155 0.98866 1.22009 0.94120 0.86550 0.92639 0.90314 1.86703 1.63282 1.40543 1.47794 0.90419 0.92207 0.91210 0.96302 0.94163 0.92756 0.91058 0.94773 0.86119 0.93441 0.88732 0.86595 0.75987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.53 71.98 0.69 -4.22 16 2 C 0.09 3.76 2.46 30.60 0.08 3.83 16 3 H 0.05 1.89 7.69 -2.39 -0.02 1.87 16 4 C -0.01 -0.61 3.75 29.85 0.11 -0.50 16 5 C -0.51 -31.13 9.43 25.60 0.24 -30.89 16 6 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 7 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 8 N -0.95 -62.62 13.96 21.45 0.30 -62.33 16 9 Si 0.95 46.05 27.47 68.60 1.88 47.93 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 13 O -0.37 -15.96 9.24 -137.84 -1.27 -17.24 16 14 C 0.06 2.17 2.38 30.69 0.07 2.24 16 15 H 0.09 2.65 7.64 -2.39 -0.02 2.64 16 16 C 0.05 2.19 6.32 72.02 0.46 2.64 16 17 O -0.40 -13.38 10.77 -148.98 -1.60 -14.99 16 18 C 0.05 1.16 6.69 72.01 0.48 1.64 16 19 C -0.17 -3.19 5.84 30.68 0.18 -3.01 16 20 C 0.11 2.78 3.51 30.71 0.11 2.89 16 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 22 O -0.58 -17.25 12.13 -137.84 -1.67 -18.92 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.74 7.97 -2.39 -0.02 1.72 16 26 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 27 H 0.04 1.83 7.57 -2.39 -0.02 1.82 16 28 H 0.26 16.13 8.31 -92.71 -0.77 15.35 16 29 H 0.07 3.15 8.03 -2.39 -0.02 3.13 16 30 H 0.03 1.58 7.82 -2.39 -0.02 1.56 16 31 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.22 7.82 -2.38 -0.02 1.20 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.39 7.07 9.09 -74.06 -0.67 6.39 16 Total: -1.00 -77.12 285.67 0.84 -76.28 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.33 Total: 14.31 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 2.87 Total: -25.05 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.30 Total: -62.33 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -4.55 Total: -51.15 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Total: -77.12 0.84 -76.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686576359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.221 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds