Wall clock time and date at job start Mon Mar 30 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47045 * 59.99897 * 9 7 5 11 11 H 1.48503 * 109.47476 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47106 * 299.99848 * 9 7 5 13 13 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 14 14 C 1.42902 * 113.99874 * 270.00076 * 13 2 1 15 15 H 1.09003 * 109.52076 * 329.87053 * 14 13 2 16 16 C 1.53099 * 109.52492 * 89.99619 * 14 13 2 17 17 O 1.42897 * 109.41268 * 177.51221 * 16 14 13 18 18 C 1.42902 * 114.10240 * 298.84138 * 17 16 14 19 19 C 1.53093 * 109.41007 * 61.16253 * 18 17 16 20 20 C 1.53175 * 109.52213 * 209.68319 * 14 13 2 21 21 H 1.09002 * 109.54810 * 302.97929 * 20 14 13 22 22 O 1.42903 * 109.54382 * 63.24709 * 20 14 13 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 27 27 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 28 28 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.48133 * 297.50259 * 16 14 13 30 30 H 1.09004 * 109.47477 * 57.53389 * 16 14 13 31 31 H 1.08999 * 109.47832 * 181.14129 * 18 17 16 32 32 H 1.08992 * 109.48079 * 301.17813 * 18 17 16 33 33 H 1.08996 * 109.52336 * 62.29581 * 19 18 17 34 34 H 1.09005 * 109.51738 * 182.42327 * 19 18 17 35 35 H 0.96693 * 114.00302 * 179.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3578 8 7 3.5764 -1.8386 -3.2990 9 14 6.0919 -1.0611 -2.4369 10 1 6.6845 -1.6862 -1.2272 11 1 6.5871 -1.7622 -3.6488 12 1 6.4843 0.3699 -2.4974 13 8 2.0063 -0.6737 1.1667 14 6 2.2001 0.1829 2.2941 15 1 2.4650 1.1828 1.9505 16 6 0.9090 0.2491 3.1142 17 8 1.1226 1.0595 4.2716 18 6 2.1313 0.5628 5.1537 19 6 3.4714 0.5093 4.4155 20 6 3.3255 -0.3731 3.1719 21 1 3.0829 -1.3919 3.4741 22 8 4.5511 -0.3698 2.4370 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0608 -2.2459 -4.0341 29 1 0.1148 0.6839 2.5074 30 1 0.6222 -0.7564 3.4224 31 1 2.2175 1.2238 6.0161 32 1 1.8604 -0.4384 5.4885 33 1 3.7625 1.5160 4.1157 34 1 4.2330 0.0904 5.0732 35 1 5.3082 -0.7094 2.9333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686576362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:27 Heat of formation + Delta-G solvation = -152.437255 kcal Electronic energy + Delta-G solvation = -17134.352427 eV Core-core repulsion = 14325.309810 eV Total energy + Delta-G solvation = -2809.042617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.71443 -37.21724 -36.29833 -33.17610 -31.75600 -31.24356 -29.51836 -27.30553 -24.38100 -23.43278 -22.87819 -20.51427 -19.90593 -17.31318 -16.67154 -16.21377 -16.12359 -15.59273 -14.96804 -14.44941 -13.99750 -13.82919 -13.40000 -13.16372 -12.68359 -12.39256 -11.97851 -11.69457 -11.56643 -11.33965 -11.21639 -10.96610 -10.65491 -10.60115 -10.30478 -9.95055 -9.83704 -9.68296 -9.29518 -9.01344 -8.57604 -8.23114 -5.85896 -3.84371 3.44318 3.46655 3.52113 3.71007 4.19952 4.41803 4.60023 4.74000 4.88072 5.01821 5.13596 5.26341 5.43874 5.51346 5.55251 5.59546 5.66961 5.79143 5.89768 6.00349 6.06615 6.12733 6.19348 6.39567 6.76255 6.97242 7.05572 7.59889 7.75380 7.94065 8.13600 8.20371 8.57462 9.21242 9.77526 11.26164 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030149 B = 0.008116 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.486833 B = 3449.357302 C = 4248.955766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 H 0.048 0.952 4 C 0.025 3.975 5 C -0.499 4.499 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.279 1.279 13 O -0.346 6.346 14 C 0.065 3.935 15 H 0.070 0.930 16 C 0.038 3.962 17 O -0.381 6.381 18 C 0.062 3.938 19 C -0.188 4.188 20 C 0.108 3.892 21 H 0.059 0.941 22 O -0.540 6.540 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.029 0.971 28 H 0.258 0.742 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 3.970 15.688 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.033 3.967 3 H 0.066 0.934 4 C -0.012 4.012 5 C -0.538 4.538 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.545 5.545 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.205 1.205 13 O -0.265 6.265 14 C 0.006 3.994 15 H 0.088 0.912 16 C -0.039 4.039 17 O -0.300 6.300 18 C -0.015 4.015 19 C -0.226 4.226 20 C 0.048 3.952 21 H 0.077 0.923 22 O -0.343 6.343 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.370 4.089 15.084 15.988 hybrid contribution 1.517 -0.241 0.297 1.564 sum -1.854 3.847 15.381 15.963 Atomic orbital electron populations 1.22530 0.98226 1.01974 1.00697 1.22533 0.90801 0.96198 0.87198 0.93362 1.19239 0.96526 0.96202 0.89264 1.21186 0.91785 1.33459 1.07357 0.92110 1.24981 0.98214 0.95637 0.95871 1.69959 1.35397 1.36730 1.12365 0.86632 0.86158 0.77990 0.77025 1.20269 1.21640 1.20497 1.88061 1.86074 1.33490 1.18873 1.22620 0.92564 0.95533 0.88708 0.91185 1.23434 0.97956 0.95856 0.86644 1.87931 1.57004 1.51010 1.34017 1.22544 0.86833 0.99625 0.92538 1.23025 0.98951 1.02585 0.98084 1.21854 0.85807 0.97647 0.89900 0.92266 1.86793 1.17478 1.87530 1.42518 0.92260 0.93853 0.92012 0.95752 0.95261 0.93216 0.87776 0.92328 0.88666 0.92981 0.90081 0.90375 0.78485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.32 37.16 0.35 -2.77 16 2 C 0.09 1.96 2.67 -26.73 -0.07 1.89 16 3 H 0.05 1.06 7.37 -51.93 -0.38 0.67 16 4 C 0.02 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.50 -14.85 8.88 -34.44 -0.31 -15.16 16 6 H 0.06 1.83 7.74 -52.49 -0.41 1.42 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -28.10 13.29 55.43 0.74 -27.36 16 9 Si 0.89 22.89 29.54 -169.99 -5.02 17.87 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 13 O -0.35 -7.51 9.37 -41.48 -0.39 -7.90 16 14 C 0.07 1.14 2.48 -26.59 -0.07 1.08 16 15 H 0.07 1.30 7.37 -51.93 -0.38 0.92 16 16 C 0.04 0.55 6.21 37.21 0.23 0.78 16 17 O -0.38 -5.26 10.76 -35.23 -0.38 -5.64 16 18 C 0.06 0.66 6.84 37.21 0.25 0.92 16 19 C -0.19 -2.16 5.77 -26.59 -0.15 -2.31 16 20 C 0.11 1.66 3.23 -26.55 -0.09 1.57 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 O -0.54 -9.55 13.27 -41.48 -0.55 -10.10 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.04 0.65 5.53 -51.93 -0.29 0.36 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.10 1.46 5.59 -51.93 -0.29 1.17 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.37 4.57 9.09 45.56 0.41 4.99 16 LS Contribution 285.51 15.07 4.30 4.30 Total: -1.00 -34.03 285.51 -6.08 -40.11 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.70 Total: 0.71 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.08 Total: -11.99 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 0.74 Total: -27.36 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.32 Total: -23.64 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.03 -6.08 -40.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686576362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.327 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds