Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47045 * 59.99897 * 9 7 5 11 11 H 1.48503 * 109.47476 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47106 * 299.99848 * 9 7 5 13 13 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 14 14 C 1.42902 * 113.99874 * 270.00076 * 13 2 1 15 15 H 1.09003 * 109.52076 * 329.87053 * 14 13 2 16 16 C 1.53099 * 109.52492 * 89.99619 * 14 13 2 17 17 O 1.42897 * 109.41268 * 177.51221 * 16 14 13 18 18 C 1.42902 * 114.10240 * 298.84138 * 17 16 14 19 19 C 1.53093 * 109.41007 * 61.16253 * 18 17 16 20 20 C 1.53175 * 109.52213 * 209.68319 * 14 13 2 21 21 H 1.09002 * 109.54810 * 302.97929 * 20 14 13 22 22 O 1.42903 * 109.54382 * 63.24709 * 20 14 13 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 27 27 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 28 28 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.48133 * 297.50259 * 16 14 13 30 30 H 1.09004 * 109.47477 * 57.53389 * 16 14 13 31 31 H 1.08999 * 109.47832 * 181.14129 * 18 17 16 32 32 H 1.08992 * 109.48079 * 301.17813 * 18 17 16 33 33 H 1.08996 * 109.52336 * 62.29581 * 19 18 17 34 34 H 1.09005 * 109.51738 * 182.42327 * 19 18 17 35 35 H 0.96693 * 114.00302 * 179.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3578 8 7 3.5764 -1.8386 -3.2990 9 14 6.0919 -1.0611 -2.4369 10 1 6.6845 -1.6862 -1.2272 11 1 6.5871 -1.7622 -3.6488 12 1 6.4843 0.3699 -2.4974 13 8 2.0063 -0.6737 1.1667 14 6 2.2001 0.1829 2.2941 15 1 2.4650 1.1828 1.9505 16 6 0.9090 0.2491 3.1142 17 8 1.1226 1.0595 4.2716 18 6 2.1313 0.5628 5.1537 19 6 3.4714 0.5093 4.4155 20 6 3.3255 -0.3731 3.1719 21 1 3.0829 -1.3919 3.4741 22 8 4.5511 -0.3698 2.4370 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0608 -2.2459 -4.0341 29 1 0.1148 0.6839 2.5074 30 1 0.6222 -0.7564 3.4224 31 1 2.2175 1.2238 6.0161 32 1 1.8604 -0.4384 5.4885 33 1 3.7625 1.5160 4.1157 34 1 4.2330 0.0904 5.0732 35 1 5.3082 -0.7094 2.9333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686576362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = -178.880112 kcal Electronic energy + Delta-G solvation = -17135.499075 eV Core-core repulsion = 14325.309810 eV Total energy + Delta-G solvation = -2810.189266 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90261 -38.69590 -37.54855 -35.27281 -33.31980 -32.56910 -30.81072 -29.30414 -25.55552 -25.12384 -24.29129 -22.06813 -21.32600 -18.62065 -18.39125 -18.03780 -17.25883 -16.93638 -16.50761 -16.04751 -15.34692 -15.22858 -14.78204 -14.50443 -14.09604 -13.97869 -13.51642 -13.29936 -13.21847 -13.05614 -12.63641 -12.60536 -12.38188 -12.17507 -11.94849 -11.50964 -11.29691 -11.08144 -10.92992 -10.83587 -10.54823 -10.14140 -8.16354 -6.23320 1.37202 1.41607 1.49822 2.43743 2.57072 2.97920 3.16957 3.26553 3.70710 3.80130 3.95887 4.03279 4.12568 4.18253 4.37934 4.45831 4.50914 4.55190 4.68377 4.74934 4.79358 4.85693 4.99076 5.14349 5.17884 5.25759 5.44125 5.53044 5.82705 6.06337 6.27788 6.57854 6.88619 6.92291 7.43032 8.95669 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030149 B = 0.008116 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.486833 B = 3449.357302 C = 4248.955766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 H 0.042 0.958 4 C 0.027 3.973 5 C -0.518 4.518 6 H 0.051 0.949 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.269 1.269 13 O -0.373 6.373 14 C 0.056 3.944 15 H 0.051 0.949 16 C 0.050 3.950 17 O -0.391 6.391 18 C 0.055 3.945 19 C -0.175 4.175 20 C 0.101 3.899 21 H 0.063 0.937 22 O -0.576 6.576 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.069 0.931 26 H -0.006 1.006 27 H 0.013 0.987 28 H 0.262 0.738 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 4.454 17.682 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.557 4.557 6 H 0.069 0.931 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.195 1.195 13 O -0.292 6.292 14 C -0.003 4.003 15 H 0.069 0.931 16 C -0.027 4.027 17 O -0.310 6.310 18 C -0.021 4.021 19 C -0.213 4.213 20 C 0.042 3.958 21 H 0.081 0.919 22 O -0.384 6.384 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.012 0.988 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.940 4.580 17.105 17.950 hybrid contribution 1.412 -0.401 -0.278 1.494 sum -1.527 4.179 16.827 17.406 Atomic orbital electron populations 1.22403 0.94753 1.02513 1.02692 1.22240 0.93434 0.94662 0.85662 0.93964 1.19118 0.95499 0.94786 0.91598 1.21461 0.93319 1.33588 1.07283 0.93054 1.25877 1.03478 0.95107 0.95389 1.70078 1.37443 1.37347 1.12925 0.85554 0.79869 0.78503 0.77403 1.19686 1.20554 1.19451 1.87984 1.86626 1.34885 1.19737 1.22937 0.95263 0.94061 0.88067 0.93090 1.23229 0.96123 0.96602 0.86769 1.87926 1.57985 1.51317 1.33782 1.22851 0.85429 1.01350 0.92508 1.22936 1.00571 1.01192 0.96624 1.22035 0.84377 0.98714 0.90705 0.91882 1.86729 1.19048 1.87995 1.44589 0.92436 0.90697 0.91191 0.98784 0.96893 0.92905 0.87463 0.91356 0.85809 0.91364 0.91102 0.87159 0.76232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.76 9.32 71.98 0.67 -5.09 16 2 C 0.10 4.34 2.67 30.59 0.08 4.42 16 3 H 0.04 1.90 7.37 -2.39 -0.02 1.88 16 4 C 0.03 1.51 4.68 29.85 0.14 1.65 16 5 C -0.52 -31.66 8.88 25.60 0.23 -31.44 16 6 H 0.05 3.17 7.74 -2.91 -0.02 3.14 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -59.32 13.29 21.44 0.28 -59.03 16 9 Si 0.96 47.33 29.54 68.60 2.03 49.35 16 10 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 13 O -0.37 -16.38 9.37 -143.00 -1.34 -17.72 16 14 C 0.06 1.93 2.48 30.69 0.08 2.00 16 15 H 0.05 1.93 7.37 -2.39 -0.02 1.91 16 16 C 0.05 1.36 6.21 72.02 0.45 1.80 16 17 O -0.39 -9.79 10.76 -148.98 -1.60 -11.39 16 18 C 0.05 0.99 6.84 72.01 0.49 1.48 16 19 C -0.18 -3.56 5.77 30.68 0.18 -3.38 16 20 C 0.10 3.00 3.23 30.71 0.10 3.09 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 O -0.58 -20.23 13.27 -143.00 -1.90 -22.13 16 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.07 2.11 5.53 -2.39 -0.01 2.09 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.11 2.79 5.59 -2.39 -0.01 2.77 16 30 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.12 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.39 9.28 9.09 -74.06 -0.67 8.61 16 Total: -1.00 -74.70 285.51 0.74 -73.95 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.40 Total: 12.07 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 2.87 Total: -25.10 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.28 Total: -59.03 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -4.84 Total: -51.24 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -74.70 0.74 -73.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686576362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.926 kcal (2) G-P(sol) polarization free energy of solvation -74.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds