Wall clock time and date at job start Mon Mar 30 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99853 * 2 1 4 4 H 1.48496 * 109.47169 * 270.00156 * 3 2 1 5 5 H 1.48497 * 109.47040 * 29.99781 * 3 2 1 6 6 H 1.48501 * 109.47114 * 149.99615 * 3 2 1 7 7 C 1.37877 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99673 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00328 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.47014 * 111.00111 * 293.63731 * 10 9 7 12 12 C 1.53102 * 109.25708 * 177.60550 * 11 10 9 13 13 O 1.43014 * 109.25912 * 56.84743 * 12 11 10 14 14 C 1.43013 * 113.73981 * 301.32992 * 13 12 11 15 15 C 1.47011 * 111.00287 * 170.00040 * 10 9 7 16 16 C 1.53001 * 109.54184 * 62.43498 * 15 10 9 17 17 N 1.46899 * 109.46984 * 179.42395 * 16 15 10 18 18 C 1.53006 * 109.50575 * 302.32777 * 15 10 9 19 19 O 1.42897 * 109.47113 * 185.83001 * 18 15 10 20 20 H 0.97000 * 120.00556 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46716 * 59.99620 * 9 7 2 22 22 H 1.09002 * 109.46629 * 300.00411 * 9 7 2 23 23 H 1.09006 * 109.50939 * 57.67416 * 11 10 9 24 24 H 1.08998 * 109.50621 * 297.53982 * 11 10 9 25 25 H 1.08998 * 109.50880 * 296.91093 * 12 11 10 26 26 H 1.09000 * 109.50687 * 176.78373 * 12 11 10 27 27 H 1.09000 * 109.50828 * 178.60386 * 14 13 12 28 28 H 1.08994 * 109.50567 * 298.69435 * 14 13 12 29 29 H 1.09001 * 109.47130 * 299.42760 * 16 15 10 30 30 H 1.09000 * 109.46951 * 59.42326 * 16 15 10 31 31 H 1.00900 * 111.00368 * 68.76990 * 17 16 15 32 32 H 1.00906 * 110.99685 * 192.71615 * 17 16 15 33 33 H 1.08992 * 109.47077 * 305.83379 * 18 15 10 34 34 H 1.09004 * 109.46559 * 65.82966 * 18 15 10 35 35 H 0.96697 * 113.99857 * 180.02562 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9663 -3.6585 -1.2568 12 6 3.9880 -4.7968 -1.1903 13 8 3.3074 -6.0268 -0.9271 14 6 2.5569 -6.0204 0.2903 15 6 1.5208 -4.8945 0.2388 16 6 0.5298 -5.1635 -0.8955 17 7 -0.1436 -6.4481 -0.6629 18 6 0.7688 -4.8310 1.5699 19 8 0.2164 -6.1151 1.8666 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6240 -2.5566 0.8903 23 1 3.4859 -2.7111 -1.4004 24 1 2.2840 -3.8300 -2.0893 25 1 4.7028 -4.5982 -0.3918 26 1 4.5150 -4.8689 -2.1417 27 1 2.0489 -6.9773 0.4098 28 1 3.2301 -5.8581 1.1320 29 1 -0.2115 -4.3650 -0.9272 30 1 1.0650 -5.2003 -1.8443 31 1 -0.7601 -6.3943 0.1341 32 1 -0.6430 -6.7489 -1.4865 33 1 1.4576 -4.5397 2.3627 34 1 -0.0344 -4.0975 1.4987 35 1 -0.2757 -6.1489 2.6983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693992255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:38 Heat of formation + Delta-G solvation = -77.718222 kcal Electronic energy + Delta-G solvation = -17676.526084 eV Core-core repulsion = 14903.016278 eV Total energy + Delta-G solvation = -2773.509806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78551 -36.65607 -35.25469 -33.61196 -32.38670 -30.57345 -28.28280 -25.97070 -25.25870 -24.23905 -21.79473 -21.70800 -18.05539 -17.33146 -16.48461 -16.13727 -15.60164 -15.13741 -14.76002 -14.51310 -14.23702 -13.73766 -13.49316 -13.00040 -12.70933 -12.41203 -12.29405 -11.89827 -11.69613 -11.06372 -10.88144 -10.80039 -10.63775 -10.51157 -10.13693 -9.70668 -9.60332 -9.22654 -8.88210 -8.49290 -8.21569 -7.29626 -6.11363 -4.12968 3.26062 3.32724 3.36697 4.18994 4.38304 4.41557 5.04816 5.11550 5.24537 5.36129 5.48840 5.56150 5.70226 5.78170 5.87808 5.92764 6.02259 6.18411 6.26100 6.29192 6.49004 6.58503 6.66986 7.13873 7.23892 7.56523 7.68304 7.71715 7.86280 7.94007 8.02309 8.07440 8.43922 8.94148 9.51575 10.99334 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.008742 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.589669 B = 3202.131674 C = 3678.055395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.187 3.813 10 N -0.521 5.521 11 C 0.028 3.972 12 C 0.059 3.941 13 O -0.388 6.388 14 C 0.093 3.907 15 C 0.084 3.916 16 C 0.044 3.956 17 N -0.834 5.834 18 C 0.088 3.912 19 O -0.562 6.562 20 H 0.262 0.738 21 H -0.006 1.006 22 H 0.034 0.966 23 H 0.093 0.907 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.041 0.959 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.346 0.654 32 H 0.326 0.674 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 -9.544 0.919 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.062 3.938 10 N -0.248 5.248 11 C -0.100 4.100 12 C -0.019 4.019 13 O -0.306 6.306 14 C 0.016 3.984 15 C -0.007 4.007 16 C -0.088 4.088 17 N -0.368 5.368 18 C 0.010 3.990 19 O -0.365 6.365 20 H 0.071 0.929 21 H 0.012 0.988 22 H 0.052 0.948 23 H 0.111 0.889 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.128 0.872 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.568 -9.924 0.765 10.279 hybrid contribution -1.434 2.051 -0.170 2.508 sum 1.134 -7.873 0.595 7.976 Atomic orbital electron populations 1.69947 1.06081 1.26878 1.50880 1.24983 0.94871 0.99349 0.95324 0.86493 0.79829 0.83006 0.78092 1.20702 1.21232 1.19722 1.21146 0.93523 0.89845 1.50268 0.91824 1.19846 0.90341 0.87285 0.96279 1.62561 1.27364 1.01647 1.33202 1.22648 0.96492 0.99583 0.91275 1.22719 0.94223 0.84286 1.00624 1.87931 1.65747 1.34726 1.42200 1.22474 0.91223 0.99086 0.85569 1.21535 0.93604 0.92141 0.93439 1.22275 0.96730 0.90318 0.99518 1.58685 1.38594 1.30479 1.09031 1.22159 0.96618 0.83967 0.96278 1.86449 1.73635 1.32415 1.44014 0.92873 0.98819 0.94825 0.88917 0.94882 0.92952 0.89527 0.87222 0.94037 0.95375 0.91175 0.83696 0.86353 0.92847 0.92951 0.78339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.91 8.49 -34.44 -0.29 -14.20 16 8 H 0.06 1.72 7.14 -52.48 -0.37 1.35 16 9 C 0.19 4.71 3.86 -4.98 -0.02 4.69 16 10 N -0.52 -11.12 4.48 -220.10 -0.99 -12.11 16 11 C 0.03 0.56 5.07 -3.71 -0.02 0.54 16 12 C 0.06 0.99 7.01 37.21 0.26 1.25 16 13 O -0.39 -7.11 10.29 -35.23 -0.36 -7.48 16 14 C 0.09 1.67 5.32 37.21 0.20 1.86 16 15 C 0.08 1.57 0.43 -131.49 -0.06 1.51 16 16 C 0.04 0.81 4.90 -3.82 -0.02 0.80 16 17 N -0.83 -13.00 8.14 -10.37 -0.08 -13.08 16 18 C 0.09 1.50 5.37 37.16 0.20 1.70 16 19 O -0.56 -7.75 9.86 -35.23 -0.35 -8.10 16 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 21 H -0.01 -0.16 6.91 -51.93 -0.36 -0.52 16 22 H 0.03 0.89 5.88 -51.93 -0.31 0.59 16 23 H 0.09 1.89 6.83 -51.93 -0.35 1.54 16 24 H 0.03 0.67 6.38 -51.93 -0.33 0.34 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.11 1.95 7.02 -51.93 -0.36 1.59 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.57 6.73 -51.93 -0.35 0.22 16 30 H 0.07 1.36 6.06 -51.93 -0.31 1.05 16 31 H 0.35 5.16 6.58 -39.29 -0.26 4.90 16 32 H 0.33 4.49 9.08 -39.29 -0.36 4.13 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.97 6.49 -51.93 -0.34 0.64 16 35 H 0.37 3.41 9.12 45.56 0.42 3.82 16 LS Contribution 267.90 15.07 4.04 4.04 Total: -1.00 -30.11 267.90 -5.99 -36.10 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.12 Total: 10.14 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 0.16 Total: -0.39 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.33 Total: -50.52 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.71 Total: -15.58 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.11 -5.99 -36.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693992255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.621 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds