Wall clock time and date at job start Mon Mar 30 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48506 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47337 * 300.00367 * 3 2 1 6 6 H 1.48506 * 109.46983 * 60.00573 * 3 2 1 7 7 C 1.37876 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99835 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.47014 * 111.00406 * 291.57832 * 10 9 7 12 12 C 1.53095 * 109.26385 * 177.60598 * 11 10 9 13 13 O 1.43014 * 109.25701 * 56.84285 * 12 11 10 14 14 C 1.43017 * 113.74220 * 301.33146 * 13 12 11 15 15 C 1.47012 * 111.00614 * 167.93568 * 10 9 7 16 16 C 1.53004 * 109.50696 * 302.33161 * 15 10 9 17 17 N 1.46896 * 109.46801 * 305.09200 * 16 15 10 18 18 C 1.53002 * 109.53782 * 62.43831 * 15 10 9 19 19 O 1.42900 * 109.47003 * 179.89405 * 18 15 10 20 20 H 0.97008 * 120.00002 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47392 * 60.00860 * 9 7 2 22 22 H 1.08999 * 109.47670 * 300.00581 * 9 7 2 23 23 H 1.08996 * 109.50592 * 57.66111 * 11 10 9 24 24 H 1.09006 * 109.50297 * 297.54395 * 11 10 9 25 25 H 1.09000 * 109.50472 * 296.91045 * 12 11 10 26 26 H 1.08997 * 109.54511 * 176.79992 * 12 11 10 27 27 H 1.08999 * 109.50770 * 298.73881 * 14 13 12 28 28 H 1.08994 * 109.54287 * 178.62993 * 14 13 12 29 29 H 1.09002 * 109.46992 * 185.08589 * 16 15 10 30 30 H 1.08999 * 109.46729 * 65.09520 * 16 15 10 31 31 H 1.00899 * 110.99768 * 56.05043 * 17 16 15 32 32 H 1.00907 * 110.99424 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47332 * 299.88951 * 18 15 10 34 34 H 1.08995 * 109.47290 * 59.89486 * 18 15 10 35 35 H 0.96698 * 114.00104 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4990 -0.0005 10 7 2.2056 -3.6156 -0.0005 11 6 2.9317 -3.6882 -1.2768 12 6 3.9551 -4.8250 -1.2118 13 8 3.2822 -6.0482 -0.9013 14 6 2.5653 -6.0131 0.3357 15 6 1.5279 -4.8883 0.2863 16 6 0.8125 -4.7934 1.6355 17 7 1.7735 -4.3934 2.6721 18 6 0.5064 -5.1834 -0.8139 19 8 -0.1497 -6.4219 -0.5350 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6246 -2.5570 0.8896 23 1 3.4467 -2.7446 -1.4567 24 1 2.2268 -3.8788 -2.0862 25 1 4.6913 -4.6080 -0.4379 26 1 4.4565 -4.9197 -2.1749 27 1 3.2612 -5.8306 1.1546 28 1 2.0612 -6.9667 0.4921 29 1 0.3865 -5.7640 1.8899 30 1 0.0159 -4.0522 1.5729 31 1 2.2297 -3.5274 2.4273 32 1 1.3250 -4.3241 3.5733 33 1 -0.2311 -4.3816 -0.8496 34 1 1.0166 -5.2509 -1.7747 35 1 -0.8127 -6.6726 -1.1927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693992256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:40 Heat of formation + Delta-G solvation = -82.604805 kcal Electronic energy + Delta-G solvation = -17736.247778 eV Core-core repulsion = 14962.526074 eV Total energy + Delta-G solvation = -2773.721704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83916 -36.42172 -35.46295 -33.69437 -32.43726 -30.32885 -28.47077 -25.91959 -25.31564 -24.23374 -21.81252 -21.73441 -18.05151 -17.36572 -16.41572 -15.90390 -15.66176 -15.40407 -14.84006 -14.52005 -13.99805 -13.77033 -13.64638 -13.20615 -12.89835 -12.27112 -12.13563 -11.89694 -11.48882 -11.26866 -10.88615 -10.84230 -10.68072 -10.37218 -10.23308 -9.89293 -9.56258 -9.29029 -8.98649 -8.54153 -8.01847 -7.39428 -6.13982 -4.15997 3.23627 3.31884 3.36156 4.27464 4.35571 4.54787 4.74999 5.08160 5.21880 5.37455 5.44967 5.58621 5.67886 5.74040 5.82183 5.95834 6.04098 6.17769 6.26905 6.32456 6.42091 6.54211 6.57447 7.11795 7.17986 7.61824 7.64929 7.72867 7.85173 7.94434 8.02343 8.11844 8.39980 8.92111 9.49123 10.96518 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029974 B = 0.008904 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.908365 B = 3143.849406 C = 3397.501146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.185 3.815 10 N -0.512 5.512 11 C 0.024 3.976 12 C 0.061 3.939 13 O -0.394 6.394 14 C 0.088 3.912 15 C 0.084 3.916 16 C 0.083 3.917 17 N -0.846 5.846 18 C 0.052 3.948 19 O -0.570 6.570 20 H 0.261 0.739 21 H -0.008 1.008 22 H 0.035 0.965 23 H 0.093 0.907 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.360 0.640 32 H 0.329 0.671 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -8.875 -0.640 9.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.060 3.940 10 N -0.238 5.238 11 C -0.104 4.104 12 C -0.016 4.016 13 O -0.313 6.313 14 C 0.011 3.989 15 C -0.008 4.008 16 C -0.048 4.048 17 N -0.376 5.376 18 C -0.028 4.028 19 O -0.373 6.373 20 H 0.071 0.929 21 H 0.010 0.990 22 H 0.053 0.947 23 H 0.111 0.889 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.175 0.825 32 H 0.140 0.860 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.122 -9.482 -0.043 9.983 hybrid contribution -1.394 2.104 -1.001 2.715 sum 1.728 -7.378 -1.044 7.649 Atomic orbital electron populations 1.69965 1.06094 1.26800 1.50823 1.24991 0.94854 0.99384 0.95301 0.86439 0.80113 0.83325 0.77536 1.19577 1.21128 1.21011 1.21166 0.93579 0.89709 1.50291 0.91683 1.19888 0.90360 0.87379 0.96368 1.62639 1.28434 1.01729 1.30970 1.22685 0.96808 0.99680 0.91276 1.22693 0.94320 0.84139 1.00404 1.87890 1.67662 1.34949 1.40763 1.22517 0.92961 0.97454 0.85978 1.21663 0.92820 0.92385 0.93912 1.21605 0.93130 0.99774 0.90340 1.58765 1.33167 1.41647 1.04052 1.22923 0.95283 0.85449 0.99169 1.86422 1.57548 1.40375 1.52978 0.92912 0.99030 0.94688 0.88881 0.95094 0.92654 0.89575 0.91482 0.89121 0.91119 0.94963 0.82481 0.86034 0.93305 0.93227 0.78310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.54 8.51 -34.45 -0.29 -13.84 16 8 H 0.06 1.72 7.28 -52.49 -0.38 1.34 16 9 C 0.18 4.53 3.60 -4.98 -0.02 4.51 16 10 N -0.51 -10.52 3.58 -220.11 -0.79 -11.30 16 11 C 0.02 0.46 5.07 -3.71 -0.02 0.44 16 12 C 0.06 1.01 7.01 37.21 0.26 1.28 16 13 O -0.39 -7.04 10.28 -35.23 -0.36 -7.40 16 14 C 0.09 1.55 5.51 37.21 0.21 1.75 16 15 C 0.08 1.55 0.28 -131.49 -0.04 1.51 16 16 C 0.08 1.50 4.96 -3.82 -0.02 1.48 16 17 N -0.85 -14.42 9.02 -10.37 -0.09 -14.52 16 18 C 0.05 0.93 5.12 37.16 0.19 1.12 16 19 O -0.57 -8.85 12.36 -35.23 -0.44 -9.28 16 20 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 21 H -0.01 -0.22 7.00 -51.93 -0.36 -0.58 16 22 H 0.04 0.92 5.78 -51.93 -0.30 0.62 16 23 H 0.09 1.85 6.97 -51.93 -0.36 1.49 16 24 H 0.03 0.60 6.39 -51.93 -0.33 0.27 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 28 H 0.09 1.55 7.60 -51.93 -0.39 1.16 16 29 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.03 0.65 6.41 -51.93 -0.33 0.31 16 31 H 0.36 6.91 7.93 -39.29 -0.31 6.60 16 32 H 0.33 4.89 9.08 -39.29 -0.36 4.53 16 33 H 0.05 0.95 6.75 -51.93 -0.35 0.60 16 34 H 0.05 0.90 6.07 -51.93 -0.32 0.59 16 35 H 0.37 4.07 9.12 45.56 0.42 4.48 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -29.16 271.38 -5.87 -35.03 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.17 Total: 12.75 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 0.17 Total: -0.33 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.14 Total: -50.83 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.80 Total: -16.69 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.16 -5.87 -35.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693992256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.574 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds