Wall clock time and date at job start Mon Mar 30 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48506 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47337 * 300.00367 * 3 2 1 6 6 H 1.48506 * 109.46983 * 60.00573 * 3 2 1 7 7 C 1.37876 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99835 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.47014 * 111.00406 * 291.57832 * 10 9 7 12 12 C 1.53095 * 109.26385 * 177.60598 * 11 10 9 13 13 O 1.43014 * 109.25701 * 56.84285 * 12 11 10 14 14 C 1.43017 * 113.74220 * 301.33146 * 13 12 11 15 15 C 1.47012 * 111.00614 * 167.93568 * 10 9 7 16 16 C 1.53004 * 109.50696 * 302.33161 * 15 10 9 17 17 N 1.46896 * 109.46801 * 305.09200 * 16 15 10 18 18 C 1.53002 * 109.53782 * 62.43831 * 15 10 9 19 19 O 1.42900 * 109.47003 * 179.89405 * 18 15 10 20 20 H 0.97008 * 120.00002 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47392 * 60.00860 * 9 7 2 22 22 H 1.08999 * 109.47670 * 300.00581 * 9 7 2 23 23 H 1.08996 * 109.50592 * 57.66111 * 11 10 9 24 24 H 1.09006 * 109.50297 * 297.54395 * 11 10 9 25 25 H 1.09000 * 109.50472 * 296.91045 * 12 11 10 26 26 H 1.08997 * 109.54511 * 176.79992 * 12 11 10 27 27 H 1.08999 * 109.50770 * 298.73881 * 14 13 12 28 28 H 1.08994 * 109.54287 * 178.62993 * 14 13 12 29 29 H 1.09002 * 109.46992 * 185.08589 * 16 15 10 30 30 H 1.08999 * 109.46729 * 65.09520 * 16 15 10 31 31 H 1.00899 * 110.99768 * 56.05043 * 17 16 15 32 32 H 1.00907 * 110.99424 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47332 * 299.88951 * 18 15 10 34 34 H 1.08995 * 109.47290 * 59.89486 * 18 15 10 35 35 H 0.96698 * 114.00104 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4990 -0.0005 10 7 2.2056 -3.6156 -0.0005 11 6 2.9317 -3.6882 -1.2768 12 6 3.9551 -4.8250 -1.2118 13 8 3.2822 -6.0482 -0.9013 14 6 2.5653 -6.0131 0.3357 15 6 1.5279 -4.8883 0.2863 16 6 0.8125 -4.7934 1.6355 17 7 1.7735 -4.3934 2.6721 18 6 0.5064 -5.1834 -0.8139 19 8 -0.1497 -6.4219 -0.5350 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6246 -2.5570 0.8896 23 1 3.4467 -2.7446 -1.4567 24 1 2.2268 -3.8788 -2.0862 25 1 4.6913 -4.6080 -0.4379 26 1 4.4565 -4.9197 -2.1749 27 1 3.2612 -5.8306 1.1546 28 1 2.0612 -6.9667 0.4921 29 1 0.3865 -5.7640 1.8899 30 1 0.0159 -4.0522 1.5729 31 1 2.2297 -3.5274 2.4273 32 1 1.3250 -4.3241 3.5733 33 1 -0.2311 -4.3816 -0.8496 34 1 1.0166 -5.2509 -1.7747 35 1 -0.8127 -6.6726 -1.1927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693992256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:40 Heat of formation + Delta-G solvation = -108.457903 kcal Electronic energy + Delta-G solvation = -17737.368853 eV Core-core repulsion = 14962.526074 eV Total energy + Delta-G solvation = -2774.842778 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.34345 -37.79341 -36.96190 -35.33172 -34.33673 -31.75763 -30.25276 -27.52571 -26.99017 -25.68959 -23.68579 -23.20274 -19.56647 -18.92979 -18.21192 -17.45783 -17.15183 -16.86322 -16.36555 -16.27884 -15.57321 -15.20116 -15.14588 -14.74097 -14.55368 -14.11249 -13.72922 -13.39189 -13.05787 -12.90855 -12.69342 -12.58957 -12.17735 -12.09878 -11.91646 -11.42458 -11.31258 -10.85788 -10.63633 -10.49071 -9.47693 -9.09470 -8.22879 -6.32176 1.39369 1.41368 1.53743 2.37565 2.90977 3.05899 3.12503 3.33247 3.64237 3.91505 3.98407 4.13899 4.22562 4.30469 4.39030 4.50442 4.62877 4.71787 4.81242 4.85221 4.96126 5.01205 5.06480 5.20386 5.28673 5.63110 5.99606 6.19731 6.23637 6.28378 6.52932 6.69008 6.79029 6.83951 7.37755 8.87862 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029974 B = 0.008904 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.908365 B = 3143.849406 C = 3397.501146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.206 3.794 10 N -0.512 5.512 11 C 0.022 3.978 12 C 0.068 3.932 13 O -0.398 6.398 14 C 0.097 3.903 15 C 0.078 3.922 16 C 0.090 3.910 17 N -0.838 5.838 18 C 0.065 3.935 19 O -0.569 6.569 20 H 0.263 0.737 21 H -0.040 1.040 22 H 0.015 0.985 23 H 0.083 0.917 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.005 0.995 31 H 0.348 0.652 32 H 0.342 0.658 33 H 0.024 0.976 34 H 0.047 0.953 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -9.498 -0.665 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.237 5.237 11 C -0.106 4.106 12 C -0.008 4.008 13 O -0.317 6.317 14 C 0.020 3.980 15 C -0.013 4.013 16 C -0.042 4.042 17 N -0.368 5.368 18 C -0.016 4.016 19 O -0.376 6.376 20 H 0.072 0.928 21 H -0.022 1.022 22 H 0.032 0.968 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.023 0.977 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.412 -10.141 -0.068 11.059 hybrid contribution -1.839 2.220 -1.001 3.052 sum 2.573 -7.921 -1.069 8.396 Atomic orbital electron populations 1.70090 1.07694 1.27718 1.51919 1.25841 0.95613 1.02981 0.94908 0.85381 0.79177 0.78880 0.77457 1.18530 1.20845 1.20708 1.21463 0.93713 0.90757 1.49730 0.91620 1.19471 0.90162 0.88502 0.93825 1.62558 1.27548 1.01711 1.31916 1.22748 0.97089 1.00553 0.90257 1.22768 0.93267 0.82470 1.02330 1.87892 1.67688 1.35372 1.40716 1.22448 0.92477 0.97119 0.85983 1.21781 0.93504 0.91751 0.94274 1.21527 0.92497 0.99569 0.90612 1.58764 1.32811 1.40692 1.04507 1.22608 0.94593 0.85693 0.98682 1.86365 1.58226 1.38865 1.54129 0.92829 1.02211 0.96754 0.89910 0.95811 0.92096 0.86432 0.91638 0.88143 0.89735 0.97671 0.83797 0.84582 0.95813 0.93463 0.75771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.52 -27.87 8.51 25.60 0.22 -27.66 16 8 H 0.07 3.46 7.28 -2.91 -0.02 3.44 16 9 C 0.21 10.39 3.60 85.55 0.31 10.69 16 10 N -0.51 -21.05 3.58 -850.28 -3.04 -24.10 16 11 C 0.02 0.82 5.07 86.31 0.44 1.25 16 12 C 0.07 2.09 7.01 72.01 0.50 2.60 16 13 O -0.40 -13.23 10.28 -148.98 -1.53 -14.76 16 14 C 0.10 3.21 5.51 72.01 0.40 3.61 16 15 C 0.08 2.84 0.28 3.54 0.00 2.85 16 16 C 0.09 3.20 4.96 86.31 0.43 3.63 16 17 N -0.84 -27.96 9.02 -186.72 -1.68 -29.64 16 18 C 0.06 2.29 5.12 71.98 0.37 2.66 16 19 O -0.57 -16.79 12.36 -148.98 -1.84 -18.63 16 20 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 21 H -0.04 -2.23 7.00 -2.38 -0.02 -2.24 16 22 H 0.01 0.79 5.78 -2.39 -0.01 0.77 16 23 H 0.08 3.25 6.97 -2.39 -0.02 3.24 16 24 H 0.02 0.92 6.39 -2.38 -0.02 0.91 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.07 2.22 7.67 -2.39 -0.02 2.20 16 28 H 0.10 3.17 7.60 -2.39 -0.02 3.15 16 29 H 0.08 2.78 7.84 -2.39 -0.02 2.77 16 30 H 0.01 0.21 6.41 -2.39 -0.02 0.20 16 31 H 0.35 13.29 7.93 -89.69 -0.71 12.58 16 32 H 0.34 9.85 9.08 -89.69 -0.81 9.03 16 33 H 0.02 0.95 6.75 -2.39 -0.02 0.94 16 34 H 0.05 1.69 6.07 -2.39 -0.01 1.68 16 35 H 0.39 7.88 9.12 -74.06 -0.68 7.21 16 Total: -1.00 -61.71 271.38 -3.74 -65.45 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -1.07 Total: 30.55 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 3.13 Total: 0.36 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.44 Total: -108.01 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -3.37 Total: -33.39 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -61.71 -3.74 -65.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693992256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.006 kcal (2) G-P(sol) polarization free energy of solvation -61.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds