Wall clock time and date at job start Mon Mar 30 2020 03:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46500 * 109.47039 * 120.00880 * 2 1 3 14 14 C 1.39194 * 119.99605 * 274.99808 * 13 2 1 15 15 C 1.39176 * 119.92323 * 359.72700 * 14 13 2 16 16 C 1.37651 * 120.07354 * 179.72723 * 15 14 13 17 17 C 1.39801 * 119.92566 * 0.54384 * 16 15 14 18 18 C 1.43204 * 120.08042 * 179.70564 * 17 16 15 19 19 N 7.57082 * 98.59966 * 69.12733 * 2 1 3 20 20 C 1.39811 * 119.84741 * 359.73215 * 17 16 15 21 21 C 1.37646 * 119.92421 * 359.97438 * 20 17 16 22 22 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 23 23 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 24 24 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 26 26 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 0.96996 * 120.00503 * 94.99987 * 13 2 1 29 29 H 1.08006 * 119.96312 * 359.97438 * 15 14 13 30 30 H 1.08004 * 120.04036 * 180.27531 * 16 15 14 31 31 H 1.08000 * 120.03642 * 179.97438 * 20 17 16 32 32 H 1.07997 * 119.96191 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0184 -0.6908 1.1961 14 6 2.1513 0.0035 2.3951 15 6 1.8253 1.3552 2.4545 16 6 1.9502 2.0435 3.6401 17 6 2.4160 1.3860 4.7825 18 6 2.5532 2.1003 6.0160 19 7 2.6621 2.6671 6.9944 20 6 2.7481 0.0294 4.7178 21 6 2.6150 -0.6543 3.5306 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6054 -0.2616 -2.1370 26 1 1.7516 -1.7714 -1.2057 27 1 2.6101 -1.9094 -3.2568 28 1 2.2491 -1.6319 1.1525 29 1 1.4700 1.8638 1.5704 30 1 1.6928 3.0914 3.6866 31 1 3.1086 -0.4815 5.5984 32 1 2.8717 -1.7020 3.4798 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:55 Heat of formation + Delta-G solvation = 34.797421 kcal Electronic energy + Delta-G solvation = -14884.404290 eV Core-core repulsion = 12423.082449 eV Total energy + Delta-G solvation = -2461.321842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.51173 -37.02780 -35.80534 -33.33379 -31.61983 -30.82237 -28.41142 -27.19006 -23.43395 -22.90579 -22.55664 -20.11510 -18.66433 -17.29846 -16.78804 -15.68239 -14.56488 -14.26250 -13.88696 -13.81176 -13.63953 -13.54552 -13.37045 -12.78604 -12.61614 -12.49581 -12.09615 -11.77172 -11.55909 -11.26913 -11.16341 -10.79137 -10.61187 -10.20620 -9.87801 -9.77555 -8.93250 -8.68673 -8.46939 -7.12626 -6.47948 -4.19284 1.20314 1.55181 2.85598 3.19574 3.38447 3.38908 3.57846 3.78529 4.12750 4.20858 4.45030 4.94976 5.00640 5.29187 5.42720 5.50776 5.61345 5.69348 5.72565 5.87091 6.06262 6.14428 6.32577 6.34669 6.45408 6.50908 6.57163 6.84830 7.06842 7.14082 7.67544 7.72091 8.02261 8.08267 8.33542 8.74694 9.52567 10.92187 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.005873 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.091325 B = 4766.663711 C = 5320.848124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.074 0.926 4 C 0.002 3.998 5 C -0.601 4.601 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.911 5.911 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.701 5.701 14 C 0.267 3.733 15 C -0.211 4.211 16 C -0.015 4.015 17 C -0.127 4.127 18 C 0.274 3.726 19 N -0.458 5.458 20 C -0.015 4.015 21 C -0.213 4.213 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.012 0.988 27 H 0.268 0.732 28 H 0.404 0.596 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 2.552 9.458 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.092 0.908 4 C -0.036 4.036 5 C -0.639 4.639 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.321 5.321 14 C 0.154 3.846 15 C -0.234 4.234 16 C -0.036 4.036 17 C -0.134 4.134 18 C -0.040 4.040 19 N -0.135 5.135 20 C -0.036 4.036 21 C -0.236 4.236 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.240 0.760 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.092 3.075 9.819 10.743 hybrid contribution -1.253 -0.162 0.427 1.334 sum -4.345 2.912 10.246 11.504 Atomic orbital electron populations 1.22313 0.97168 1.01781 1.01254 1.21181 0.91436 0.97338 0.85700 0.90785 1.19524 0.97517 0.95164 0.91361 1.21973 0.91348 1.39038 1.11545 0.92992 1.25813 1.06886 0.93374 0.92596 1.70813 1.10313 1.39428 1.34110 0.83568 0.74408 0.76401 0.76179 1.20799 1.21403 1.21432 1.45118 1.67521 1.12813 1.06627 1.18215 0.88585 0.91398 0.86380 1.20612 1.10870 0.93235 0.98702 1.20790 0.93331 0.98893 0.90617 1.15668 1.16018 0.93571 0.88149 1.25836 0.92438 0.92950 0.92756 1.81195 1.11472 1.09322 1.11534 1.20739 0.93945 0.91714 0.97247 1.20475 1.10411 1.00718 0.91980 0.93160 0.92041 0.92832 0.95904 0.96948 0.92148 0.76044 0.85110 0.85779 0.85773 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.42 37.16 0.35 -2.06 16 2 C 0.15 2.57 2.21 -67.93 -0.15 2.42 16 3 H 0.07 1.32 6.45 -51.93 -0.33 0.98 16 4 C 0.00 0.03 3.83 -27.88 -0.11 -0.07 16 5 C -0.60 -15.46 8.84 -34.44 -0.30 -15.76 16 6 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 7 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 8 N -0.91 -26.29 13.65 55.43 0.76 -25.54 16 9 Si 1.07 24.18 29.90 -169.99 -5.08 19.09 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.70 -11.15 4.94 -52.15 -0.26 -11.41 16 14 C 0.27 3.82 6.63 -83.82 -0.56 3.26 16 15 C -0.21 -2.83 8.82 -39.45 -0.35 -3.17 16 16 C -0.01 -0.18 9.75 -39.21 -0.38 -0.56 16 17 C -0.13 -1.59 5.74 -106.80 -0.61 -2.20 16 18 C 0.27 3.74 15.33 -22.47 -0.34 3.40 16 19 N -0.46 -7.14 18.54 41.84 0.78 -6.36 16 20 C -0.01 -0.17 9.75 -39.21 -0.38 -0.56 16 21 C -0.21 -2.68 9.87 -39.45 -0.39 -3.07 16 22 H 0.05 0.65 7.71 -51.93 -0.40 0.25 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.02 0.54 8.01 -51.93 -0.42 0.12 16 26 H 0.01 0.29 8.00 -51.93 -0.42 -0.13 16 27 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 28 H 0.40 6.45 8.61 -40.82 -0.35 6.10 16 29 H 0.13 1.71 6.09 -52.48 -0.32 1.39 16 30 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 284.29 15.07 4.28 4.28 Total: -1.00 -28.68 284.29 -6.70 -35.38 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -3.85 Total: 2.56 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -3.32 Total: -18.01 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 1.27 Total: -43.31 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.68 -6.70 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.175 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds