Wall clock time and date at job start Mon Mar 30 2020 03:01:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 109.47448 * 2 1
4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3
5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1
6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2
7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2
8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4
9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5
11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5
12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5
13 13 N 1.46500 * 109.47039 * 120.00880 * 2 1 3
14 14 C 1.39194 * 119.99605 * 274.99808 * 13 2 1
15 15 C 1.39176 * 119.92323 * 359.72700 * 14 13 2
16 16 C 1.37651 * 120.07354 * 179.72723 * 15 14 13
17 17 C 1.39801 * 119.92566 * 0.54384 * 16 15 14
18 18 C 1.43204 * 120.08042 * 179.70564 * 17 16 15
19 19 N 7.57082 * 98.59966 * 69.12733 * 2 1 3
20 20 C 1.39811 * 119.84741 * 359.73215 * 17 16 15
21 21 C 1.37646 * 119.92421 * 359.97438 * 20 17 16
22 22 H 1.09001 * 109.46894 * 299.99661 * 1 2 3
23 23 H 1.09002 * 109.46592 * 59.99548 * 1 2 3
24 24 H 1.08996 * 109.46870 * 179.97438 * 1 2 3
25 25 H 1.09004 * 109.47178 * 55.00508 * 4 2 1
26 26 H 1.08993 * 109.47411 * 295.00191 * 4 2 1
27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5
28 28 H 0.96996 * 120.00503 * 94.99987 * 13 2 1
29 29 H 1.08006 * 119.96312 * 359.97438 * 15 14 13
30 30 H 1.08004 * 120.04036 * 180.27531 * 16 15 14
31 31 H 1.08000 * 120.03642 * 179.97438 * 20 17 16
32 32 H 1.07997 * 119.96191 * 179.97438 * 21 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5420 -0.6149 -1.3129
6 1 4.0790 -0.0861 -0.5393
7 6 4.2304 -1.1925 -2.3584
8 7 3.5768 -1.8410 -3.2976
9 14 6.0921 -1.0613 -2.4368
10 1 6.5876 -1.7663 -3.6462
11 1 6.4852 0.3694 -2.5020
12 1 6.6836 -1.6824 -1.2246
13 7 2.0184 -0.6908 1.1961
14 6 2.1513 0.0035 2.3951
15 6 1.8253 1.3552 2.4545
16 6 1.9502 2.0435 3.6401
17 6 2.4160 1.3860 4.7825
18 6 2.5532 2.1003 6.0160
19 7 2.6621 2.6671 6.9944
20 6 2.7481 0.0294 4.7178
21 6 2.6150 -0.6543 3.5306
22 1 -0.3633 0.5138 0.8900
23 1 -0.3632 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 1.6054 -0.2616 -2.1370
26 1 1.7516 -1.7714 -1.2057
27 1 2.6101 -1.9094 -3.2568
28 1 2.2491 -1.6319 1.1525
29 1 1.4700 1.8638 1.5704
30 1 1.6928 3.0914 3.6866
31 1 3.1086 -0.4815 5.5984
32 1 2.8717 -1.7020 3.4798
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695788240.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:55
Heat of formation + Delta-G solvation = 19.354048 kcal
Electronic energy + Delta-G solvation = -14885.073965 eV
Core-core repulsion = 12423.082449 eV
Total energy + Delta-G solvation = -2461.991517 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.57965 -38.27251 -37.04409 -35.12799 -32.96126 -31.84981 -29.54346 -28.89894
-25.14545 -24.01963 -23.78859 -21.45376 -19.69633 -18.98585 -18.20523 -16.92458
-15.67635 -15.65419 -15.45200 -15.14649 -14.92424 -14.79452 -14.37181 -14.04145
-13.98110 -13.66581 -13.43144 -13.10414 -12.98973 -12.84951 -12.54746 -12.35529
-11.97515 -11.75791 -11.46850 -11.03559 -10.55976 -10.51801 -9.89682 -8.61783
-8.26679 -6.32464 0.16565 0.58373 1.55286 1.60939 1.77133 1.80031
2.12500 2.56352 2.59255 3.10962 3.14535 3.22122 3.96322 4.07502
4.15263 4.40933 4.47401 4.48568 4.64556 4.76832 4.88728 5.01184
5.11319 5.16078 5.21801 5.31723 5.42804 5.47963 5.56555 5.87565
6.03108 6.24677 6.47736 6.63065 6.64206 6.87989 7.46754 8.79313
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.030391 B = 0.005873 C = 0.005261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 921.091325 B = 4766.663711 C = 5320.848124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.160 3.840
3 H 0.070 0.930
4 C 0.004 3.996
5 C -0.599 4.599
6 H 0.049 0.951
7 C -0.035 4.035
8 N -0.942 5.942
9 Si 1.109 2.891
10 H -0.289 1.289
11 H -0.274 1.274
12 H -0.272 1.272
13 N -0.710 5.710
14 C 0.250 3.750
15 C -0.219 4.219
16 C -0.009 4.009
17 C -0.128 4.128
18 C 0.293 3.707
19 N -0.492 5.492
20 C -0.008 4.008
21 C -0.213 4.213
22 H 0.069 0.931
23 H 0.064 0.936
24 H 0.051 0.949
25 H 0.004 0.996
26 H -0.002 1.002
27 H 0.257 0.743
28 H 0.401 0.599
29 H 0.132 0.868
30 H 0.145 0.855
31 H 0.148 0.852
32 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.188 3.117 10.941 12.123
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.055 3.945
3 H 0.088 0.912
4 C -0.034 4.034
5 C -0.637 4.637
6 H 0.068 0.932
7 C -0.233 4.233
8 N -0.580 5.580
9 Si 0.932 3.068
10 H -0.214 1.214
11 H -0.199 1.199
12 H -0.197 1.197
13 N -0.332 5.332
14 C 0.140 3.860
15 C -0.242 4.242
16 C -0.030 4.030
17 C -0.134 4.134
18 C -0.020 4.020
19 N -0.169 5.169
20 C -0.030 4.030
21 C -0.235 4.235
22 H 0.088 0.912
23 H 0.083 0.917
24 H 0.070 0.930
25 H 0.023 0.977
26 H 0.016 0.984
27 H 0.067 0.933
28 H 0.236 0.764
29 H 0.150 0.850
30 H 0.162 0.838
31 H 0.166 0.834
32 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -2.788 3.662 11.345 12.243
hybrid contribution -1.373 -0.312 0.034 1.409
sum -4.161 3.350 11.379 12.571
Atomic orbital electron populations
1.22205 0.94861 1.02077 1.02390 1.20865 0.93164 0.96207 0.84257
0.91217 1.19433 0.95822 0.94752 0.93355 1.22315 0.93171 1.37557
1.10700 0.93236 1.27112 1.10587 0.93041 0.92548 1.70929 1.09787
1.41715 1.35557 0.83008 0.70203 0.77151 0.76461 1.21427 1.19905
1.19699 1.44952 1.68870 1.12658 1.06751 1.18441 0.89498 0.91884
0.86193 1.20703 1.11189 0.93032 0.99267 1.20973 0.92337 0.99830
0.89866 1.15771 1.16047 0.93903 0.87701 1.25896 0.91447 0.92163
0.92454 1.81226 1.12697 1.10402 1.12597 1.20977 0.92876 0.91378
0.97721 1.20649 1.09825 1.01440 0.91630 0.91191 0.91667 0.92964
0.97740 0.98376 0.93322 0.76386 0.85004 0.83756 0.83423 0.84212
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.35 9.42 71.98 0.68 -3.67 16
2 C 0.16 5.46 2.21 44.99 0.10 5.56 16
3 H 0.07 2.43 6.45 -2.39 -0.02 2.41 16
4 C 0.00 0.17 3.83 29.85 0.11 0.28 16
5 C -0.60 -30.90 8.84 25.60 0.23 -30.67 16
6 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16
7 C -0.04 -1.91 5.46 84.65 0.46 -1.44 16
8 N -0.94 -55.37 13.65 21.45 0.29 -55.08 16
9 Si 1.11 48.28 29.90 68.60 2.05 50.33 16
10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16
11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16
12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16
13 N -0.71 -21.91 4.94 -318.92 -1.58 -23.49 16
14 C 0.25 6.69 6.63 38.42 0.25 6.94 16
15 C -0.22 -5.38 8.82 22.36 0.20 -5.19 16
16 C -0.01 -0.19 9.75 22.51 0.22 0.03 16
17 C -0.13 -2.82 5.74 -21.27 -0.12 -2.94 16
18 C 0.29 7.32 15.33 88.33 1.35 8.67 16
19 N -0.49 -14.44 18.54 19.00 0.35 -14.09 16
20 C -0.01 -0.17 9.75 22.51 0.22 0.05 16
21 C -0.21 -4.83 9.87 22.35 0.22 -4.61 16
22 H 0.07 1.67 7.71 -2.39 -0.02 1.65 16
23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
25 H 0.00 0.21 8.01 -2.39 -0.02 0.19 16
26 H 0.00 -0.10 8.00 -2.39 -0.02 -0.12 16
27 H 0.26 15.14 7.22 -92.71 -0.67 14.47 16
28 H 0.40 12.60 8.61 -92.71 -0.80 11.80 16
29 H 0.13 3.19 6.09 -2.91 -0.02 3.17 16
30 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16
31 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16
32 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16
Total: -1.00 -60.90 284.29 5.48 -55.42
By element:
Atomic # 1 Polarization: 13.45 SS G_CDS: 0.43 Total: 13.88 kcal
Atomic # 6 Polarization: -30.90 SS G_CDS: 3.92 Total: -26.98 kcal
Atomic # 7 Polarization: -91.72 SS G_CDS: -0.93 Total: -92.65 kcal
Atomic # 14 Polarization: 48.28 SS G_CDS: 2.05 Total: 50.33 kcal
Total: -60.90 5.48 -55.42 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695788240.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.775 kcal
(2) G-P(sol) polarization free energy of solvation -60.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.354 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds