Wall clock time and date at job start Mon Mar 30 2020 03:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46500 * 109.47039 * 120.00880 * 2 1 3 14 14 C 1.39194 * 119.99605 * 274.99808 * 13 2 1 15 15 C 1.39176 * 119.92323 * 359.72700 * 14 13 2 16 16 C 1.37651 * 120.07354 * 179.72723 * 15 14 13 17 17 C 1.39801 * 119.92566 * 0.54384 * 16 15 14 18 18 C 1.43204 * 120.08042 * 179.70564 * 17 16 15 19 19 N 7.57082 * 98.59966 * 69.12733 * 2 1 3 20 20 C 1.39811 * 119.84741 * 359.73215 * 17 16 15 21 21 C 1.37646 * 119.92421 * 359.97438 * 20 17 16 22 22 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 23 23 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 24 24 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 26 26 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 0.96996 * 120.00503 * 94.99987 * 13 2 1 29 29 H 1.08006 * 119.96312 * 359.97438 * 15 14 13 30 30 H 1.08004 * 120.04036 * 180.27531 * 16 15 14 31 31 H 1.08000 * 120.03642 * 179.97438 * 20 17 16 32 32 H 1.07997 * 119.96191 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0184 -0.6908 1.1961 14 6 2.1513 0.0035 2.3951 15 6 1.8253 1.3552 2.4545 16 6 1.9502 2.0435 3.6401 17 6 2.4160 1.3860 4.7825 18 6 2.5532 2.1003 6.0160 19 7 2.6621 2.6671 6.9944 20 6 2.7481 0.0294 4.7178 21 6 2.6150 -0.6543 3.5306 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6054 -0.2616 -2.1370 26 1 1.7516 -1.7714 -1.2057 27 1 2.6101 -1.9094 -3.2568 28 1 2.2491 -1.6319 1.1525 29 1 1.4700 1.8638 1.5704 30 1 1.6928 3.0914 3.6866 31 1 3.1086 -0.4815 5.5984 32 1 2.8717 -1.7020 3.4798 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:55 Heat of formation + Delta-G solvation = 19.354048 kcal Electronic energy + Delta-G solvation = -14885.073965 eV Core-core repulsion = 12423.082449 eV Total energy + Delta-G solvation = -2461.991517 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57965 -38.27251 -37.04409 -35.12799 -32.96126 -31.84981 -29.54346 -28.89894 -25.14545 -24.01963 -23.78859 -21.45376 -19.69633 -18.98585 -18.20523 -16.92458 -15.67635 -15.65419 -15.45200 -15.14649 -14.92424 -14.79452 -14.37181 -14.04145 -13.98110 -13.66581 -13.43144 -13.10414 -12.98973 -12.84951 -12.54746 -12.35529 -11.97515 -11.75791 -11.46850 -11.03559 -10.55976 -10.51801 -9.89682 -8.61783 -8.26679 -6.32464 0.16565 0.58373 1.55286 1.60939 1.77133 1.80031 2.12500 2.56352 2.59255 3.10962 3.14535 3.22122 3.96322 4.07502 4.15263 4.40933 4.47401 4.48568 4.64556 4.76832 4.88728 5.01184 5.11319 5.16078 5.21801 5.31723 5.42804 5.47963 5.56555 5.87565 6.03108 6.24677 6.47736 6.63065 6.64206 6.87989 7.46754 8.79313 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.005873 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.091325 B = 4766.663711 C = 5320.848124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 H 0.070 0.930 4 C 0.004 3.996 5 C -0.599 4.599 6 H 0.049 0.951 7 C -0.035 4.035 8 N -0.942 5.942 9 Si 1.109 2.891 10 H -0.289 1.289 11 H -0.274 1.274 12 H -0.272 1.272 13 N -0.710 5.710 14 C 0.250 3.750 15 C -0.219 4.219 16 C -0.009 4.009 17 C -0.128 4.128 18 C 0.293 3.707 19 N -0.492 5.492 20 C -0.008 4.008 21 C -0.213 4.213 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.004 0.996 26 H -0.002 1.002 27 H 0.257 0.743 28 H 0.401 0.599 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 3.117 10.941 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.088 0.912 4 C -0.034 4.034 5 C -0.637 4.637 6 H 0.068 0.932 7 C -0.233 4.233 8 N -0.580 5.580 9 Si 0.932 3.068 10 H -0.214 1.214 11 H -0.199 1.199 12 H -0.197 1.197 13 N -0.332 5.332 14 C 0.140 3.860 15 C -0.242 4.242 16 C -0.030 4.030 17 C -0.134 4.134 18 C -0.020 4.020 19 N -0.169 5.169 20 C -0.030 4.030 21 C -0.235 4.235 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.067 0.933 28 H 0.236 0.764 29 H 0.150 0.850 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.788 3.662 11.345 12.243 hybrid contribution -1.373 -0.312 0.034 1.409 sum -4.161 3.350 11.379 12.571 Atomic orbital electron populations 1.22205 0.94861 1.02077 1.02390 1.20865 0.93164 0.96207 0.84257 0.91217 1.19433 0.95822 0.94752 0.93355 1.22315 0.93171 1.37557 1.10700 0.93236 1.27112 1.10587 0.93041 0.92548 1.70929 1.09787 1.41715 1.35557 0.83008 0.70203 0.77151 0.76461 1.21427 1.19905 1.19699 1.44952 1.68870 1.12658 1.06751 1.18441 0.89498 0.91884 0.86193 1.20703 1.11189 0.93032 0.99267 1.20973 0.92337 0.99830 0.89866 1.15771 1.16047 0.93903 0.87701 1.25896 0.91447 0.92163 0.92454 1.81226 1.12697 1.10402 1.12597 1.20977 0.92876 0.91378 0.97721 1.20649 1.09825 1.01440 0.91630 0.91191 0.91667 0.92964 0.97740 0.98376 0.93322 0.76386 0.85004 0.83756 0.83423 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 9.42 71.98 0.68 -3.67 16 2 C 0.16 5.46 2.21 44.99 0.10 5.56 16 3 H 0.07 2.43 6.45 -2.39 -0.02 2.41 16 4 C 0.00 0.17 3.83 29.85 0.11 0.28 16 5 C -0.60 -30.90 8.84 25.60 0.23 -30.67 16 6 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16 7 C -0.04 -1.91 5.46 84.65 0.46 -1.44 16 8 N -0.94 -55.37 13.65 21.45 0.29 -55.08 16 9 Si 1.11 48.28 29.90 68.60 2.05 50.33 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 N -0.71 -21.91 4.94 -318.92 -1.58 -23.49 16 14 C 0.25 6.69 6.63 38.42 0.25 6.94 16 15 C -0.22 -5.38 8.82 22.36 0.20 -5.19 16 16 C -0.01 -0.19 9.75 22.51 0.22 0.03 16 17 C -0.13 -2.82 5.74 -21.27 -0.12 -2.94 16 18 C 0.29 7.32 15.33 88.33 1.35 8.67 16 19 N -0.49 -14.44 18.54 19.00 0.35 -14.09 16 20 C -0.01 -0.17 9.75 22.51 0.22 0.05 16 21 C -0.21 -4.83 9.87 22.35 0.22 -4.61 16 22 H 0.07 1.67 7.71 -2.39 -0.02 1.65 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.00 0.21 8.01 -2.39 -0.02 0.19 16 26 H 0.00 -0.10 8.00 -2.39 -0.02 -0.12 16 27 H 0.26 15.14 7.22 -92.71 -0.67 14.47 16 28 H 0.40 12.60 8.61 -92.71 -0.80 11.80 16 29 H 0.13 3.19 6.09 -2.91 -0.02 3.17 16 30 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -60.90 284.29 5.48 -55.42 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.43 Total: 13.88 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.92 Total: -26.98 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -0.93 Total: -92.65 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.05 Total: 50.33 kcal Total: -60.90 5.48 -55.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.775 kcal (2) G-P(sol) polarization free energy of solvation -60.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds