Wall clock time and date at job start Mon Mar 30 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47473 * 2 1 4 4 C 1.52994 * 109.46911 * 120.00207 * 2 1 3 5 5 C 1.50710 * 109.47212 * 184.99511 * 4 2 1 6 6 H 1.07998 * 119.99729 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00246 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99994 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99920 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47546 * 89.99779 * 9 7 5 11 11 H 1.48496 * 109.47422 * 209.99820 * 9 7 5 12 12 H 1.48506 * 109.47345 * 329.99717 * 9 7 5 13 13 N 1.46502 * 109.46964 * 240.00148 * 2 1 3 14 14 C 1.39029 * 120.00142 * 84.99855 * 13 2 1 15 15 C 1.38876 * 120.17155 * 0.02562 * 14 13 2 16 16 C 1.38025 * 120.07143 * 179.97438 * 15 14 13 17 17 C 1.38566 * 120.42043 * 0.02562 * 16 15 14 18 18 C 1.37802 * 120.34550 * 359.97315 * 17 16 15 19 19 C 1.39725 * 119.91778 * 0.26230 * 18 17 16 20 20 C 1.43206 * 120.20476 * 179.74394 * 19 18 17 21 21 N 4.96578 * 109.89116 * 227.57630 * 2 1 3 22 22 H 1.08998 * 109.47473 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47036 * 300.00415 * 1 2 3 24 24 H 1.09004 * 109.47050 * 59.99481 * 1 2 3 25 25 H 1.09000 * 109.47541 * 304.99483 * 4 2 1 26 26 H 1.09006 * 109.47594 * 64.99907 * 4 2 1 27 27 H 0.97001 * 120.00400 * 179.97438 * 8 7 5 28 28 H 0.97009 * 119.99908 * 265.00039 * 13 2 1 29 29 H 1.08001 * 119.96930 * 359.95018 * 15 14 13 30 30 H 1.08001 * 119.78970 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.82670 * 180.02562 * 17 16 15 32 32 H 1.08002 * 120.03679 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0857 0.5396 7 6 4.2303 -1.1928 2.3583 8 7 5.5409 -1.0997 2.4139 9 14 3.3014 -2.1079 3.6958 10 1 3.1706 -3.5381 3.3180 11 1 4.0446 -2.0004 4.9769 12 1 1.9503 -1.5127 3.8560 13 7 2.0183 -0.6906 -1.1962 14 6 2.1510 0.0030 -2.3938 15 6 1.8222 1.3506 -2.4601 16 6 1.9553 2.0373 -3.6500 17 6 2.4160 1.3905 -4.7855 18 6 2.7472 0.0537 -4.7393 19 6 2.6133 -0.6565 -3.5435 20 6 2.9505 -2.0472 -3.4898 21 7 3.2195 -3.1501 -3.4469 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6054 -0.2618 2.1370 26 1 1.7515 -1.7716 1.2056 27 1 6.0253 -1.5059 3.1496 28 1 2.2490 -1.6318 -1.1527 29 1 1.4617 1.8619 -1.5797 30 1 1.6980 3.0852 -3.6965 31 1 2.5169 1.9372 -5.7115 32 1 3.1054 -0.4455 -5.6275 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695791597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:57 Heat of formation + Delta-G solvation = 43.720609 kcal Electronic energy + Delta-G solvation = -15208.024056 eV Core-core repulsion = 12747.089153 eV Total energy + Delta-G solvation = -2460.934903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55402 -36.52568 -35.99075 -32.99490 -31.70780 -30.90422 -28.15548 -28.01816 -23.62663 -23.23883 -21.81850 -19.91897 -18.57941 -16.84754 -16.80094 -15.84050 -14.66211 -14.49115 -14.21766 -13.95652 -13.69780 -12.98726 -12.87566 -12.75672 -12.46916 -12.33765 -12.00978 -11.91303 -11.80738 -11.37728 -11.10107 -10.84366 -10.52265 -10.02808 -9.98368 -9.62460 -9.29845 -8.75467 -8.63503 -7.11339 -6.12103 -4.11988 1.14695 1.80926 3.02128 3.23897 3.30392 3.32304 3.32486 3.79164 4.20508 4.32487 4.36380 5.02340 5.14561 5.21620 5.45418 5.51622 5.64156 5.67501 5.71966 5.87247 6.06462 6.17424 6.30769 6.40199 6.48285 6.52494 6.70694 6.90890 6.96745 7.07924 7.62250 7.69036 7.89007 8.06794 8.42345 8.93465 9.48682 11.00883 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.007348 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.050379 B = 3809.860889 C = 4150.831816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.081 0.919 4 C -0.022 4.022 5 C -0.523 4.523 6 H 0.075 0.925 7 C 0.069 3.931 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.703 5.703 14 C 0.284 3.716 15 C -0.205 4.205 16 C -0.041 4.041 17 C -0.200 4.200 18 C -0.020 4.020 19 C -0.132 4.132 20 C 0.264 3.736 21 N -0.440 5.440 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.402 0.598 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 6.370 -10.500 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.047 3.953 3 H 0.099 0.901 4 C -0.060 4.060 5 C -0.561 4.561 6 H 0.093 0.907 7 C -0.133 4.133 8 N -0.535 5.535 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.323 5.323 14 C 0.170 3.830 15 C -0.228 4.228 16 C -0.061 4.061 17 C -0.221 4.221 18 C -0.041 4.041 19 C -0.142 4.142 20 C -0.050 4.050 21 N -0.116 5.116 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.399 4.691 -10.069 14.551 hybrid contribution -0.210 -0.506 0.869 1.027 sum -9.609 4.184 -9.200 13.946 Atomic orbital electron populations 1.22333 0.96992 1.01883 1.01468 1.21135 0.91508 0.97530 0.85162 0.90136 1.19899 0.98085 0.95527 0.92483 1.21044 0.89308 1.35816 1.09930 0.90654 1.25021 0.94715 0.95751 0.97800 1.69902 1.06544 1.44918 1.32175 0.86832 0.80403 0.80587 0.81759 1.20362 1.21257 1.19018 1.45076 1.67693 1.12841 1.06720 1.17850 0.88826 0.91373 0.84993 1.20672 1.10197 0.92428 0.99486 1.21047 0.93899 0.99151 0.91955 1.20660 1.07935 0.94508 0.98998 1.20808 0.94375 0.93955 0.95013 1.15496 1.17158 0.86253 0.95283 1.25632 0.92972 0.92657 0.93764 1.81219 1.10807 1.12294 1.07319 0.92829 0.91834 0.92917 0.94808 0.96646 0.92631 0.76207 0.85048 0.85949 0.86041 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.42 37.16 0.35 -2.05 16 2 C 0.15 2.67 2.21 -67.93 -0.15 2.52 16 3 H 0.08 1.42 6.48 -51.93 -0.34 1.08 16 4 C -0.02 -0.49 3.58 -27.88 -0.10 -0.59 16 5 C -0.52 -14.18 9.39 -34.44 -0.32 -14.50 16 6 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 9 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 N -0.70 -12.47 4.87 -51.96 -0.25 -12.73 16 14 C 0.28 4.48 6.64 -83.56 -0.55 3.93 16 15 C -0.21 -2.77 8.83 -39.42 -0.35 -3.12 16 16 C -0.04 -0.45 10.03 -39.54 -0.40 -0.85 16 17 C -0.20 -2.15 10.02 -39.62 -0.40 -2.55 16 18 C -0.02 -0.25 9.75 -39.19 -0.38 -0.63 16 19 C -0.13 -2.01 5.76 -106.61 -0.61 -2.62 16 20 C 0.26 4.56 14.09 -22.47 -0.32 4.24 16 21 N -0.44 -8.47 18.54 41.84 0.78 -7.70 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.67 7.69 -51.93 -0.40 0.27 16 25 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 26 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.40 7.74 7.46 -40.82 -0.30 7.44 16 29 H 0.13 1.68 6.10 -52.49 -0.32 1.36 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 280.03 15.07 4.22 4.22 Total: -1.00 -30.58 280.03 -6.31 -36.89 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.83 Total: 3.71 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -3.33 Total: -14.35 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.30 Total: -47.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.58 -6.31 -36.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.606 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds