Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47473 * 2 1 4 4 C 1.52994 * 109.46911 * 120.00207 * 2 1 3 5 5 C 1.50710 * 109.47212 * 184.99511 * 4 2 1 6 6 H 1.07998 * 119.99729 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00246 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99994 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99920 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47546 * 89.99779 * 9 7 5 11 11 H 1.48496 * 109.47422 * 209.99820 * 9 7 5 12 12 H 1.48506 * 109.47345 * 329.99717 * 9 7 5 13 13 N 1.46502 * 109.46964 * 240.00148 * 2 1 3 14 14 C 1.39029 * 120.00142 * 84.99855 * 13 2 1 15 15 C 1.38876 * 120.17155 * 0.02562 * 14 13 2 16 16 C 1.38025 * 120.07143 * 179.97438 * 15 14 13 17 17 C 1.38566 * 120.42043 * 0.02562 * 16 15 14 18 18 C 1.37802 * 120.34550 * 359.97315 * 17 16 15 19 19 C 1.39725 * 119.91778 * 0.26230 * 18 17 16 20 20 C 1.43206 * 120.20476 * 179.74394 * 19 18 17 21 21 N 4.96578 * 109.89116 * 227.57630 * 2 1 3 22 22 H 1.08998 * 109.47473 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47036 * 300.00415 * 1 2 3 24 24 H 1.09004 * 109.47050 * 59.99481 * 1 2 3 25 25 H 1.09000 * 109.47541 * 304.99483 * 4 2 1 26 26 H 1.09006 * 109.47594 * 64.99907 * 4 2 1 27 27 H 0.97001 * 120.00400 * 179.97438 * 8 7 5 28 28 H 0.97009 * 119.99908 * 265.00039 * 13 2 1 29 29 H 1.08001 * 119.96930 * 359.95018 * 15 14 13 30 30 H 1.08001 * 119.78970 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.82670 * 180.02562 * 17 16 15 32 32 H 1.08002 * 120.03679 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0857 0.5396 7 6 4.2303 -1.1928 2.3583 8 7 5.5409 -1.0997 2.4139 9 14 3.3014 -2.1079 3.6958 10 1 3.1706 -3.5381 3.3180 11 1 4.0446 -2.0004 4.9769 12 1 1.9503 -1.5127 3.8560 13 7 2.0183 -0.6906 -1.1962 14 6 2.1510 0.0030 -2.3938 15 6 1.8222 1.3506 -2.4601 16 6 1.9553 2.0373 -3.6500 17 6 2.4160 1.3905 -4.7855 18 6 2.7472 0.0537 -4.7393 19 6 2.6133 -0.6565 -3.5435 20 6 2.9505 -2.0472 -3.4898 21 7 3.2195 -3.1501 -3.4469 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6054 -0.2618 2.1370 26 1 1.7515 -1.7716 1.2056 27 1 6.0253 -1.5059 3.1496 28 1 2.2490 -1.6318 -1.1527 29 1 1.4617 1.8619 -1.5797 30 1 1.6980 3.0852 -3.6965 31 1 2.5169 1.9372 -5.7115 32 1 3.1054 -0.4455 -5.6275 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695791597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = 24.887593 kcal Electronic energy + Delta-G solvation = -15208.840717 eV Core-core repulsion = 12747.089153 eV Total energy + Delta-G solvation = -2461.751564 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66882 -37.86725 -37.31687 -34.89147 -33.16617 -32.00861 -29.80054 -29.20096 -24.90803 -24.67905 -23.16571 -21.25158 -19.76466 -18.93483 -17.93789 -17.13255 -16.35230 -15.68757 -15.41801 -15.21965 -15.02563 -14.62812 -14.33467 -14.07246 -13.85824 -13.67594 -13.56671 -13.47117 -12.98525 -12.63488 -12.42769 -12.30602 -11.82319 -11.76464 -11.55450 -11.40747 -10.87804 -10.79875 -9.78462 -8.30723 -8.29225 -6.34039 0.08036 0.79634 1.32994 1.33527 1.44594 1.67521 2.08288 2.32438 2.52221 3.06379 3.07822 3.15930 3.96192 4.15253 4.29449 4.40919 4.52043 4.58355 4.66520 4.74191 4.93560 5.03366 5.08891 5.13871 5.27608 5.37902 5.41880 5.57181 5.63062 5.75363 6.04282 6.24592 6.40512 6.59894 6.69443 6.75623 7.29969 8.86122 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.007348 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.050379 B = 3809.860889 C = 4150.831816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.077 0.923 4 C -0.022 4.022 5 C -0.518 4.518 6 H 0.033 0.967 7 C 0.002 3.998 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.237 1.237 13 N -0.721 5.721 14 C 0.261 3.739 15 C -0.216 4.216 16 C -0.029 4.029 17 C -0.186 4.186 18 C -0.021 4.021 19 C -0.155 4.155 20 C 0.279 3.721 21 N -0.489 5.489 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.389 0.611 29 H 0.137 0.863 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 8.079 -11.418 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.095 0.905 4 C -0.060 4.060 5 C -0.556 4.556 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.160 1.160 13 N -0.342 5.342 14 C 0.149 3.851 15 C -0.238 4.238 16 C -0.048 4.048 17 C -0.206 4.206 18 C -0.041 4.041 19 C -0.165 4.165 20 C -0.034 4.034 21 N -0.167 5.167 22 H 0.070 0.930 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.222 0.778 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.687 6.437 -11.024 17.307 hybrid contribution 0.546 -0.885 0.984 1.431 sum -11.142 5.552 -10.039 15.992 Atomic orbital electron populations 1.22219 0.93884 1.02280 1.03125 1.20995 0.93792 0.96466 0.83499 0.90468 1.19877 0.94467 0.96255 0.95366 1.21351 0.92131 1.33972 1.08145 0.94842 1.26000 0.95510 0.97128 1.00817 1.70074 1.08630 1.47089 1.33469 0.85729 0.80188 0.78945 0.78170 1.20377 1.21235 1.15983 1.45050 1.69338 1.12263 1.07578 1.18144 0.90108 0.92406 0.84418 1.20890 1.10528 0.91493 1.00931 1.21513 0.91784 1.00712 0.90823 1.21138 1.05395 0.93740 1.00310 1.21146 0.93747 0.94756 0.94479 1.15783 1.18734 0.85330 0.96623 1.26115 0.91768 0.93091 0.92392 1.81204 1.12865 1.13729 1.08898 0.93049 0.90330 0.91047 0.93713 0.96621 0.92759 0.77810 0.84562 0.82302 0.82314 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 9.42 71.98 0.68 -3.43 16 2 C 0.16 5.44 2.21 44.99 0.10 5.54 16 3 H 0.08 2.69 6.48 -2.39 -0.02 2.67 16 4 C -0.02 -0.95 3.58 29.85 0.11 -0.85 16 5 C -0.52 -28.83 9.39 25.60 0.24 -28.59 16 6 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 7 C 0.00 0.12 5.47 84.66 0.46 0.58 16 8 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 9 Si 0.95 43.96 27.47 68.60 1.88 45.85 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 13 N -0.72 -25.93 4.87 -318.30 -1.55 -27.48 16 14 C 0.26 8.12 6.64 38.67 0.26 8.38 16 15 C -0.22 -5.37 8.83 22.37 0.20 -5.17 16 16 C -0.03 -0.52 10.03 22.30 0.22 -0.30 16 17 C -0.19 -3.18 10.02 22.24 0.22 -2.96 16 18 C -0.02 -0.45 9.75 22.53 0.22 -0.23 16 19 C -0.16 -4.64 5.76 -21.15 -0.12 -4.76 16 20 C 0.28 9.91 14.09 88.33 1.25 11.15 16 21 N -0.49 -19.61 18.54 19.01 0.35 -19.26 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 1.61 7.69 -2.39 -0.02 1.59 16 25 H 0.04 1.85 7.20 -2.39 -0.02 1.83 16 26 H 0.02 0.68 7.57 -2.38 -0.02 0.66 16 27 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.39 15.59 7.46 -92.70 -0.69 14.90 16 29 H 0.14 3.20 6.10 -2.91 -0.02 3.18 16 30 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -69.67 280.03 5.20 -64.47 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.38 Total: 16.97 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 3.83 Total: -20.64 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -0.90 Total: -106.65 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal Total: -69.67 5.20 -64.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.358 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds