Wall clock time and date at job start Mon Mar 30 2020 03:01:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08994 * 109.47599 * 2 1
4 4 C 1.53004 * 109.46926 * 240.00406 * 2 1 3
5 5 C 1.50696 * 109.47374 * 65.00050 * 4 2 1
6 6 H 1.08007 * 120.00003 * 359.97438 * 5 4 2
7 7 C 1.37881 * 120.00149 * 180.02562 * 5 4 2
8 8 N 1.31510 * 119.99856 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 119.99835 * 180.02562 * 7 5 4
10 10 H 1.48496 * 109.47235 * 59.99779 * 9 7 5
11 11 H 1.48500 * 109.47201 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.47209 * 299.99590 * 9 7 5
13 13 N 1.46504 * 109.47065 * 120.00711 * 2 1 3
14 14 C 1.36031 * 126.34759 * 60.01802 * 13 2 1
15 15 N 1.30111 * 110.09613 * 179.74019 * 14 13 2
16 16 C 1.35786 * 109.64697 * 0.22644 * 15 14 13
17 17 C 1.39739 * 133.60953 * 179.97438 * 16 15 14
18 18 C 1.36601 * 119.88746 * 180.02562 * 17 16 15
19 19 C 1.38772 * 120.67248 * 0.02562 * 18 17 16
20 20 C 1.37858 * 120.45136 * 359.97438 * 19 18 17
21 21 C 1.38052 * 126.34487 * 240.14444 * 13 2 1
22 22 H 1.09002 * 109.47766 * 179.97438 * 1 2 3
23 23 H 1.08999 * 109.47188 * 300.00065 * 1 2 3
24 24 H 1.09000 * 109.47420 * 59.99437 * 1 2 3
25 25 H 1.08999 * 109.47407 * 185.00601 * 4 2 1
26 26 H 1.09004 * 109.47027 * 304.99903 * 4 2 1
27 27 H 0.97001 * 119.99540 * 180.02562 * 8 7 5
28 28 H 1.08002 * 124.95583 * 0.02562 * 14 13 2
29 29 H 1.07995 * 120.05265 * 359.97438 * 17 16 15
30 30 H 1.07997 * 119.66062 * 179.97438 * 18 17 16
31 31 H 1.08003 * 119.77977 * 179.97438 * 19 18 17
32 32 H 1.07997 * 120.15641 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7212 -1.2493
5 6 1.6413 0.0571 -2.4766
6 1 1.0799 0.9743 -2.3757
7 6 1.9923 -0.4021 -3.7284
8 7 2.6754 -1.5191 -3.8513
9 14 1.4987 0.5631 -5.2496
10 1 2.0918 1.9231 -5.1870
11 1 1.9935 -0.1369 -6.4622
12 1 0.0188 0.6708 -5.3090
13 7 2.0183 -0.6908 1.1961
14 6 1.7708 -1.9840 1.5378
15 7 2.3633 -2.2711 2.6601
16 6 3.0278 -1.1791 3.1179
17 6 3.8115 -0.9314 4.2480
18 6 4.3606 0.3049 4.4379
19 6 4.1483 1.3226 3.5187
20 6 3.3787 1.1012 2.3966
21 6 2.8129 -0.1491 2.1866
22 1 -0.3635 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5139 -0.8899
25 1 3.1262 -0.7995 -1.2057
26 1 1.6053 -1.7198 -1.2953
27 1 2.9226 -1.8420 -4.7320
28 1 1.1738 -2.6735 0.9593
29 1 3.9821 -1.7159 4.9704
30 1 4.9653 0.4924 5.3128
31 1 4.5891 2.2947 3.6834
32 1 3.2163 1.8967 1.6845
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695819806.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:52
Heat of formation + Delta-G solvation = 57.845448 kcal
Electronic energy + Delta-G solvation = -15382.000676 eV
Core-core repulsion = 12921.678272 eV
Total energy + Delta-G solvation = -2460.322404 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.72114 -37.18990 -35.44803 -32.85938 -31.23301 -29.21940 -28.88768 -27.21266
-24.07550 -22.91016 -21.84682 -21.68205 -19.08678 -17.13591 -16.57345 -15.96959
-15.48930 -15.03187 -14.56267 -13.97783 -13.76601 -13.32084 -13.17377 -12.68934
-12.20481 -11.83760 -11.76800 -11.47365 -11.20347 -11.09780 -10.92363 -10.70362
-10.40466 -10.19993 -9.57746 -9.50447 -9.40363 -8.56087 -7.97814 -7.72413
-6.19947 -4.25554 1.29014 1.86193 3.15728 3.21684 3.24720 3.27752
3.29963 4.19849 4.30141 4.64208 4.97801 5.15684 5.23077 5.25133
5.39283 5.67398 5.72267 5.75087 5.84138 5.89654 5.96669 6.24571
6.42879 6.51496 6.60045 6.75110 6.84343 6.90261 7.17660 7.33056
7.41467 7.60339 7.78331 8.10612 8.29869 8.78571 9.39891 10.91078
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.039845 B = 0.006239 C = 0.005987
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.550134 B = 4486.639945 C = 4675.840038
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.132 3.868
3 H 0.087 0.913
4 C 0.020 3.980
5 C -0.527 4.527
6 H 0.060 0.940
7 C 0.062 3.938
8 N -0.889 5.889
9 Si 0.897 3.103
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.275 1.275
13 N -0.471 5.471
14 C 0.272 3.728
15 N -0.515 5.515
16 C 0.041 3.959
17 C -0.070 4.070
18 C -0.136 4.136
19 C -0.115 4.115
20 C -0.103 4.103
21 C 0.046 3.954
22 H 0.057 0.943
23 H 0.041 0.959
24 H 0.086 0.914
25 H 0.023 0.977
26 H 0.026 0.974
27 H 0.265 0.735
28 H 0.208 0.792
29 H 0.122 0.878
30 H 0.122 0.878
31 H 0.124 0.876
32 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.597 4.047 11.139 11.867
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.032 3.968
3 H 0.106 0.894
4 C -0.017 4.017
5 C -0.565 4.565
6 H 0.078 0.922
7 C -0.141 4.141
8 N -0.527 5.527
9 Si 0.724 3.276
10 H -0.201 1.201
11 H -0.211 1.211
12 H -0.200 1.200
13 N -0.158 5.158
14 C -0.014 4.014
15 N -0.235 5.235
16 C -0.078 4.078
17 C -0.090 4.090
18 C -0.157 4.157
19 C -0.135 4.135
20 C -0.124 4.124
21 C -0.065 4.065
22 H 0.076 0.924
23 H 0.060 0.940
24 H 0.105 0.895
25 H 0.041 0.959
26 H 0.044 0.956
27 H 0.074 0.926
28 H 0.225 0.775
29 H 0.140 0.860
30 H 0.140 0.860
31 H 0.142 0.858
32 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -0.599 3.214 11.266 11.731
hybrid contribution -0.207 1.154 -1.517 1.918
sum -0.807 4.368 9.749 10.713
Atomic orbital electron populations
1.22063 0.94031 1.02475 1.01988 1.21930 0.94830 0.97074 0.83001
0.89445 1.19460 0.97115 0.96037 0.89135 1.20950 1.36446 1.08801
0.90349 0.92179 1.24997 0.94782 0.95008 0.99270 1.69949 1.37739
1.20857 1.24106 0.86577 0.78974 0.80032 0.81999 1.20109 1.21132
1.20036 1.46106 1.39503 1.11110 1.19066 1.25199 0.98284 0.84823
0.93116 1.70468 1.14697 1.27076 1.11223 1.19136 1.01827 0.90089
0.96787 1.19915 0.96640 0.97116 0.95324 1.20516 1.02044 0.93043
1.00088 1.20765 0.99394 0.99184 0.94190 1.20009 0.99479 0.93990
0.98888 1.19015 0.99137 0.96549 0.91817 0.92411 0.93953 0.89523
0.95857 0.95611 0.92570 0.77543 0.85992 0.85997 0.85840 0.86212
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.48 9.06 37.16 0.34 -2.14 16
2 C 0.13 2.54 3.01 -67.93 -0.20 2.34 16
3 H 0.09 1.66 7.62 -51.93 -0.40 1.27 16
4 C 0.02 0.48 4.45 -27.88 -0.12 0.36 16
5 C -0.53 -13.55 8.41 -34.44 -0.29 -13.84 16
6 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16
7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16
8 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16
9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16
10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16
12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16
13 N -0.47 -8.86 2.67 -108.70 -0.29 -9.15 16
14 C 0.27 4.94 11.60 -89.79 -1.04 3.90 16
15 N -0.51 -9.92 11.27 -12.05 -0.14 -10.06 16
16 C 0.04 0.76 7.23 -84.70 -0.61 0.15 16
17 C -0.07 -1.08 10.05 -39.61 -0.40 -1.48 16
18 C -0.14 -1.79 9.96 -39.98 -0.40 -2.19 16
19 C -0.12 -1.55 10.03 -39.52 -0.40 -1.95 16
20 C -0.10 -1.64 9.89 -39.50 -0.39 -2.03 16
21 C 0.05 0.85 6.87 -83.99 -0.58 0.27 16
22 H 0.06 0.93 7.95 -51.93 -0.41 0.51 16
23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16
24 H 0.09 1.49 6.95 -51.93 -0.36 1.13 16
25 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16
27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
28 H 0.21 3.18 8.06 -52.49 -0.42 2.76 16
29 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16
30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16
31 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16
32 H 0.12 1.75 7.76 -52.49 -0.41 1.35 16
LS Contribution 276.34 15.07 4.16 4.16
Total: -1.00 -29.74 276.34 -8.78 -38.52
By element:
Atomic # 1 Polarization: 4.88 SS G_CDS: -4.04 Total: 0.84 kcal
Atomic # 6 Polarization: -10.84 SS G_CDS: -4.19 Total: -15.04 kcal
Atomic # 7 Polarization: -44.19 SS G_CDS: 0.31 Total: -43.88 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal
Total LS contribution 4.16 Total: 4.16 kcal
Total: -29.74 -8.78 -38.52 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695819806.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.364 kcal
(2) G-P(sol) polarization free energy of solvation -29.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.623 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds