Wall clock time and date at job start Mon Mar 30 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47599 * 2 1 4 4 C 1.53004 * 109.46926 * 240.00406 * 2 1 3 5 5 C 1.50696 * 109.47374 * 65.00050 * 4 2 1 6 6 H 1.08007 * 120.00003 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00149 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47235 * 59.99779 * 9 7 5 11 11 H 1.48500 * 109.47201 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47209 * 299.99590 * 9 7 5 13 13 N 1.46504 * 109.47065 * 120.00711 * 2 1 3 14 14 C 1.36031 * 126.34759 * 60.01802 * 13 2 1 15 15 N 1.30111 * 110.09613 * 179.74019 * 14 13 2 16 16 C 1.35786 * 109.64697 * 0.22644 * 15 14 13 17 17 C 1.39739 * 133.60953 * 179.97438 * 16 15 14 18 18 C 1.36601 * 119.88746 * 180.02562 * 17 16 15 19 19 C 1.38772 * 120.67248 * 0.02562 * 18 17 16 20 20 C 1.37858 * 120.45136 * 359.97438 * 19 18 17 21 21 C 1.38052 * 126.34487 * 240.14444 * 13 2 1 22 22 H 1.09002 * 109.47766 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47188 * 300.00065 * 1 2 3 24 24 H 1.09000 * 109.47420 * 59.99437 * 1 2 3 25 25 H 1.08999 * 109.47407 * 185.00601 * 4 2 1 26 26 H 1.09004 * 109.47027 * 304.99903 * 4 2 1 27 27 H 0.97001 * 119.99540 * 180.02562 * 8 7 5 28 28 H 1.08002 * 124.95583 * 0.02562 * 14 13 2 29 29 H 1.07995 * 120.05265 * 359.97438 * 17 16 15 30 30 H 1.07997 * 119.66062 * 179.97438 * 18 17 16 31 31 H 1.08003 * 119.77977 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.15641 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6754 -1.5191 -3.8513 9 14 1.4987 0.5631 -5.2496 10 1 2.0918 1.9231 -5.1870 11 1 1.9935 -0.1369 -6.4622 12 1 0.0188 0.6708 -5.3090 13 7 2.0183 -0.6908 1.1961 14 6 1.7708 -1.9840 1.5378 15 7 2.3633 -2.2711 2.6601 16 6 3.0278 -1.1791 3.1179 17 6 3.8115 -0.9314 4.2480 18 6 4.3606 0.3049 4.4379 19 6 4.1483 1.3226 3.5187 20 6 3.3787 1.1012 2.3966 21 6 2.8129 -0.1491 2.1866 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 3.1262 -0.7995 -1.2057 26 1 1.6053 -1.7198 -1.2953 27 1 2.9226 -1.8420 -4.7320 28 1 1.1738 -2.6735 0.9593 29 1 3.9821 -1.7159 4.9704 30 1 4.9653 0.4924 5.3128 31 1 4.5891 2.2947 3.6834 32 1 3.2163 1.8967 1.6845 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695819806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:52 Heat of formation + Delta-G solvation = 57.845448 kcal Electronic energy + Delta-G solvation = -15382.000676 eV Core-core repulsion = 12921.678272 eV Total energy + Delta-G solvation = -2460.322404 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.72114 -37.18990 -35.44803 -32.85938 -31.23301 -29.21940 -28.88768 -27.21266 -24.07550 -22.91016 -21.84682 -21.68205 -19.08678 -17.13591 -16.57345 -15.96959 -15.48930 -15.03187 -14.56267 -13.97783 -13.76601 -13.32084 -13.17377 -12.68934 -12.20481 -11.83760 -11.76800 -11.47365 -11.20347 -11.09780 -10.92363 -10.70362 -10.40466 -10.19993 -9.57746 -9.50447 -9.40363 -8.56087 -7.97814 -7.72413 -6.19947 -4.25554 1.29014 1.86193 3.15728 3.21684 3.24720 3.27752 3.29963 4.19849 4.30141 4.64208 4.97801 5.15684 5.23077 5.25133 5.39283 5.67398 5.72267 5.75087 5.84138 5.89654 5.96669 6.24571 6.42879 6.51496 6.60045 6.75110 6.84343 6.90261 7.17660 7.33056 7.41467 7.60339 7.78331 8.10612 8.29869 8.78571 9.39891 10.91078 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039845 B = 0.006239 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.550134 B = 4486.639945 C = 4675.840038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.132 3.868 3 H 0.087 0.913 4 C 0.020 3.980 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.471 5.471 14 C 0.272 3.728 15 N -0.515 5.515 16 C 0.041 3.959 17 C -0.070 4.070 18 C -0.136 4.136 19 C -0.115 4.115 20 C -0.103 4.103 21 C 0.046 3.954 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.023 0.977 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.208 0.792 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 4.047 11.139 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.032 3.968 3 H 0.106 0.894 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.158 5.158 14 C -0.014 4.014 15 N -0.235 5.235 16 C -0.078 4.078 17 C -0.090 4.090 18 C -0.157 4.157 19 C -0.135 4.135 20 C -0.124 4.124 21 C -0.065 4.065 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.225 0.775 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.599 3.214 11.266 11.731 hybrid contribution -0.207 1.154 -1.517 1.918 sum -0.807 4.368 9.749 10.713 Atomic orbital electron populations 1.22063 0.94031 1.02475 1.01988 1.21930 0.94830 0.97074 0.83001 0.89445 1.19460 0.97115 0.96037 0.89135 1.20950 1.36446 1.08801 0.90349 0.92179 1.24997 0.94782 0.95008 0.99270 1.69949 1.37739 1.20857 1.24106 0.86577 0.78974 0.80032 0.81999 1.20109 1.21132 1.20036 1.46106 1.39503 1.11110 1.19066 1.25199 0.98284 0.84823 0.93116 1.70468 1.14697 1.27076 1.11223 1.19136 1.01827 0.90089 0.96787 1.19915 0.96640 0.97116 0.95324 1.20516 1.02044 0.93043 1.00088 1.20765 0.99394 0.99184 0.94190 1.20009 0.99479 0.93990 0.98888 1.19015 0.99137 0.96549 0.91817 0.92411 0.93953 0.89523 0.95857 0.95611 0.92570 0.77543 0.85992 0.85997 0.85840 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.06 37.16 0.34 -2.14 16 2 C 0.13 2.54 3.01 -67.93 -0.20 2.34 16 3 H 0.09 1.66 7.62 -51.93 -0.40 1.27 16 4 C 0.02 0.48 4.45 -27.88 -0.12 0.36 16 5 C -0.53 -13.55 8.41 -34.44 -0.29 -13.84 16 6 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 13 N -0.47 -8.86 2.67 -108.70 -0.29 -9.15 16 14 C 0.27 4.94 11.60 -89.79 -1.04 3.90 16 15 N -0.51 -9.92 11.27 -12.05 -0.14 -10.06 16 16 C 0.04 0.76 7.23 -84.70 -0.61 0.15 16 17 C -0.07 -1.08 10.05 -39.61 -0.40 -1.48 16 18 C -0.14 -1.79 9.96 -39.98 -0.40 -2.19 16 19 C -0.12 -1.55 10.03 -39.52 -0.40 -1.95 16 20 C -0.10 -1.64 9.89 -39.50 -0.39 -2.03 16 21 C 0.05 0.85 6.87 -83.99 -0.58 0.27 16 22 H 0.06 0.93 7.95 -51.93 -0.41 0.51 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.09 1.49 6.95 -51.93 -0.36 1.13 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.21 3.18 8.06 -52.49 -0.42 2.76 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.75 7.76 -52.49 -0.41 1.35 16 LS Contribution 276.34 15.07 4.16 4.16 Total: -1.00 -29.74 276.34 -8.78 -38.52 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.04 Total: 0.84 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -4.19 Total: -15.04 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.31 Total: -43.88 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.74 -8.78 -38.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.364 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds