Wall clock time and date at job start Mon Mar 30 2020 03:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47599 * 2 1 4 4 C 1.53004 * 109.46926 * 240.00406 * 2 1 3 5 5 C 1.50696 * 109.47374 * 65.00050 * 4 2 1 6 6 H 1.08007 * 120.00003 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00149 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47235 * 59.99779 * 9 7 5 11 11 H 1.48500 * 109.47201 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47209 * 299.99590 * 9 7 5 13 13 N 1.46504 * 109.47065 * 120.00711 * 2 1 3 14 14 C 1.36031 * 126.34759 * 60.01802 * 13 2 1 15 15 N 1.30111 * 110.09613 * 179.74019 * 14 13 2 16 16 C 1.35786 * 109.64697 * 0.22644 * 15 14 13 17 17 C 1.39739 * 133.60953 * 179.97438 * 16 15 14 18 18 C 1.36601 * 119.88746 * 180.02562 * 17 16 15 19 19 C 1.38772 * 120.67248 * 0.02562 * 18 17 16 20 20 C 1.37858 * 120.45136 * 359.97438 * 19 18 17 21 21 C 1.38052 * 126.34487 * 240.14444 * 13 2 1 22 22 H 1.09002 * 109.47766 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47188 * 300.00065 * 1 2 3 24 24 H 1.09000 * 109.47420 * 59.99437 * 1 2 3 25 25 H 1.08999 * 109.47407 * 185.00601 * 4 2 1 26 26 H 1.09004 * 109.47027 * 304.99903 * 4 2 1 27 27 H 0.97001 * 119.99540 * 180.02562 * 8 7 5 28 28 H 1.08002 * 124.95583 * 0.02562 * 14 13 2 29 29 H 1.07995 * 120.05265 * 359.97438 * 17 16 15 30 30 H 1.07997 * 119.66062 * 179.97438 * 18 17 16 31 31 H 1.08003 * 119.77977 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.15641 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6754 -1.5191 -3.8513 9 14 1.4987 0.5631 -5.2496 10 1 2.0918 1.9231 -5.1870 11 1 1.9935 -0.1369 -6.4622 12 1 0.0188 0.6708 -5.3090 13 7 2.0183 -0.6908 1.1961 14 6 1.7708 -1.9840 1.5378 15 7 2.3633 -2.2711 2.6601 16 6 3.0278 -1.1791 3.1179 17 6 3.8115 -0.9314 4.2480 18 6 4.3606 0.3049 4.4379 19 6 4.1483 1.3226 3.5187 20 6 3.3787 1.1012 2.3966 21 6 2.8129 -0.1491 2.1866 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 3.1262 -0.7995 -1.2057 26 1 1.6053 -1.7198 -1.2953 27 1 2.9226 -1.8420 -4.7320 28 1 1.1738 -2.6735 0.9593 29 1 3.9821 -1.7159 4.9704 30 1 4.9653 0.4924 5.3128 31 1 4.5891 2.2947 3.6834 32 1 3.2163 1.8967 1.6845 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:51 Heat of formation + Delta-G solvation = 42.586876 kcal Electronic energy + Delta-G solvation = -15382.662337 eV Core-core repulsion = 12921.678272 eV Total energy + Delta-G solvation = -2460.984065 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.05375 -38.44399 -36.98410 -34.72858 -32.67977 -30.55714 -30.15800 -28.93950 -25.84032 -24.17816 -23.40446 -22.96641 -20.49559 -18.82296 -17.99144 -17.57550 -16.67343 -16.62443 -16.20925 -15.37216 -15.12745 -14.68721 -14.47857 -14.39287 -13.92461 -13.28584 -12.97915 -12.85074 -12.82312 -12.62959 -12.37771 -12.32455 -12.05568 -11.81008 -11.40061 -11.06615 -10.91176 -10.61247 -9.25366 -8.99917 -8.24878 -6.37160 0.06951 0.65604 1.42053 1.44027 1.51779 1.78543 1.90018 2.39969 2.97669 3.10273 3.38777 3.70828 3.78468 4.13556 4.19615 4.24487 4.37329 4.53457 4.55424 4.63713 4.81526 4.93382 4.95345 5.19778 5.25221 5.32998 5.45121 5.58773 5.61473 5.69011 5.72652 6.02975 6.04138 6.30968 6.76882 6.93107 7.33105 8.86983 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039845 B = 0.006239 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.550134 B = 4486.639945 C = 4675.840038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.146 3.854 3 H 0.089 0.911 4 C 0.031 3.969 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.479 5.479 14 C 0.257 3.743 15 N -0.534 5.534 16 C 0.009 3.991 17 C -0.084 4.084 18 C -0.123 4.123 19 C -0.100 4.100 20 C -0.125 4.125 21 C 0.020 3.980 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.083 0.917 25 H -0.019 1.019 26 H 0.007 0.993 27 H 0.264 0.736 28 H 0.223 0.777 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 6.090 12.219 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.044 3.956 3 H 0.108 0.892 4 C -0.007 4.007 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.166 5.166 14 C -0.029 4.029 15 N -0.254 5.254 16 C -0.110 4.110 17 C -0.103 4.103 18 C -0.143 4.143 19 C -0.120 4.120 20 C -0.146 4.146 21 C -0.090 4.090 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.000 1.000 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.239 0.761 29 H 0.155 0.845 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.653 5.271 12.377 13.468 hybrid contribution -0.086 0.541 -1.720 1.805 sum -0.739 5.812 10.656 12.161 Atomic orbital electron populations 1.21974 0.91902 1.03010 1.02768 1.21610 0.96329 0.96216 0.81402 0.89245 1.19248 0.94346 0.95654 0.91464 1.21399 1.35728 1.09129 0.90963 0.90725 1.25942 0.94782 0.95903 1.02794 1.70101 1.39499 1.22864 1.24723 0.85479 0.79208 0.78574 0.77692 1.19212 1.21465 1.18621 1.46020 1.40198 1.11356 1.19066 1.25541 0.98840 0.85123 0.93376 1.70416 1.15327 1.27915 1.11770 1.19637 1.03138 0.89974 0.98269 1.20300 0.96437 0.98803 0.94784 1.21024 1.00717 0.91682 1.00892 1.21290 0.97253 1.00858 0.92552 1.20340 1.00473 0.93354 1.00420 1.19461 0.99840 0.97773 0.91931 0.92081 0.91915 0.89789 1.00015 0.97492 0.92724 0.76069 0.84483 0.81833 0.81985 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.06 71.98 0.65 -3.89 16 2 C 0.15 5.64 3.01 44.99 0.14 5.78 16 3 H 0.09 3.39 7.62 -2.39 -0.02 3.37 16 4 C 0.03 1.51 4.45 29.85 0.13 1.64 16 5 C -0.53 -27.64 8.41 25.60 0.22 -27.42 16 6 H 0.07 3.57 7.06 -2.91 -0.02 3.55 16 7 C 0.00 0.24 5.46 84.66 0.46 0.70 16 8 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 9 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 N -0.48 -18.34 2.67 -497.82 -1.33 -19.66 16 14 C 0.26 9.65 11.60 180.06 2.09 11.73 16 15 N -0.53 -21.03 11.27 -192.03 -2.16 -23.20 16 16 C 0.01 0.32 7.23 39.45 0.29 0.60 16 17 C -0.08 -2.43 10.05 22.25 0.22 -2.21 16 18 C -0.12 -2.79 9.96 22.01 0.22 -2.57 16 19 C -0.10 -2.34 10.03 22.31 0.22 -2.12 16 20 C -0.13 -3.81 9.89 22.32 0.22 -3.58 16 21 C 0.02 0.73 6.87 38.86 0.27 1.00 16 22 H 0.06 1.94 7.95 -2.39 -0.02 1.92 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.08 2.78 6.95 -2.39 -0.02 2.77 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H 0.01 0.35 8.08 -2.38 -0.02 0.33 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.22 7.14 8.06 -2.91 -0.02 7.12 16 29 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.56 7.76 -2.91 -0.02 3.54 16 Total: -1.00 -65.63 276.34 5.05 -60.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.10 Total: 13.33 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 5.13 Total: -20.34 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.21 Total: -97.30 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -65.63 5.05 -60.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.166 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds