Wall clock time and date at job start Mon Mar 30 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99936 * 2 1 4 4 C 1.53000 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.98864 * 58.91714 * 4 3 2 6 6 O 1.42904 * 109.47127 * 306.08551 * 5 4 3 7 7 C 1.42897 * 113.99999 * 180.02562 * 6 5 4 8 8 C 1.54096 * 109.87967 * 180.02562 * 4 3 2 9 9 C 1.54815 * 104.18778 * 117.39897 * 8 4 3 10 10 C 1.54996 * 102.08953 * 339.11183 * 9 8 4 11 11 H 1.08993 * 110.62614 * 278.36857 * 10 9 8 12 12 C 1.50699 * 110.61321 * 155.52681 * 10 9 8 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 10 9 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 O 1.43741 * 109.87816 * 297.83550 * 4 3 2 21 21 H 1.09004 * 109.47157 * 299.99669 * 1 2 3 22 22 H 1.09002 * 109.47643 * 59.99592 * 1 2 3 23 23 H 1.08997 * 109.47315 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46984 * 60.00085 * 3 2 1 25 25 H 1.08998 * 109.47700 * 300.00169 * 3 2 1 26 26 H 1.08991 * 109.46993 * 66.08598 * 5 4 3 27 27 H 1.09002 * 109.46657 * 186.08927 * 5 4 3 28 28 H 1.08992 * 109.47194 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47252 * 299.99985 * 7 6 5 30 30 H 1.09004 * 109.47402 * 59.99952 * 7 6 5 31 31 H 1.08990 * 110.48969 * 358.71734 * 8 4 3 32 32 H 1.09006 * 110.48678 * 236.06589 * 8 4 3 33 33 H 1.09004 * 110.90218 * 220.91890 * 9 8 4 34 34 H 1.08990 * 110.91055 * 97.31482 * 9 8 4 35 35 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9977 0.4037 -1.2324 6 8 3.3137 -0.8499 -1.2859 7 6 3.6752 -1.6620 -2.4047 8 6 4.1721 2.5880 0.0000 9 6 4.9584 2.6473 1.3323 10 6 4.2648 1.5415 2.1681 11 1 3.3467 1.9192 2.6179 12 6 5.1965 1.0157 3.2295 13 1 6.1948 1.4176 3.3191 14 6 4.7742 0.0213 4.0863 15 7 5.5871 -0.4373 5.0129 16 14 3.0477 -0.6745 3.9309 17 1 3.0613 -1.8287 2.9965 18 1 2.1362 0.3748 3.4081 19 1 2.5728 -1.1230 5.2645 20 8 3.9733 0.5167 1.1944 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8465 -0.8899 26 1 3.7747 0.9779 -2.1315 27 1 5.0718 0.2291 -1.1698 28 1 3.1133 -2.5954 -2.3729 29 1 3.4458 -1.1308 -3.3285 30 1 4.7426 -1.8794 -2.3661 31 1 3.4003 3.3572 -0.0221 32 1 4.8486 2.7004 -0.8474 33 1 4.8459 3.6220 1.8072 34 1 6.0108 2.4125 1.1737 35 1 5.2902 -1.1371 5.6154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702579403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:58 Heat of formation + Delta-G solvation = -129.787299 kcal Electronic energy + Delta-G solvation = -17618.091357 eV Core-core repulsion = 14810.030916 eV Total energy + Delta-G solvation = -2808.060441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.31986 -36.89378 -36.76798 -32.73066 -31.50687 -30.61861 -27.18803 -27.05098 -25.54755 -24.76304 -22.71315 -20.18190 -19.61261 -16.97597 -16.16875 -16.04080 -15.84816 -15.23646 -15.00398 -14.63169 -14.44656 -14.03126 -13.06343 -12.96970 -12.74312 -12.46641 -12.01875 -11.87245 -11.52293 -11.09618 -10.94403 -10.74931 -10.60636 -10.51479 -10.37595 -9.77601 -9.55728 -9.46511 -9.19229 -9.10230 -8.54961 -8.33424 -6.06053 -4.15384 3.49537 3.58502 3.72899 4.02149 4.32715 4.57664 4.81450 5.15445 5.24270 5.40392 5.45893 5.50674 5.55035 5.59707 5.62080 5.65933 5.66653 5.77120 5.82194 5.91750 5.93584 6.07733 6.19141 6.37695 6.39016 6.57512 6.66241 7.16304 7.60575 7.65070 7.70228 8.28348 8.48113 8.93809 9.57274 11.03885 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.011236 C = 0.010037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.716840 B = 2491.390802 C = 2789.097257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.347 6.347 3 C 0.057 3.943 4 C 0.102 3.898 5 C 0.077 3.923 6 O -0.350 6.350 7 C 0.030 3.970 8 C -0.142 4.142 9 C -0.135 4.135 10 C 0.162 3.838 11 H 0.030 0.970 12 C -0.516 4.516 13 H 0.080 0.920 14 C 0.084 3.916 15 N -0.892 5.892 16 Si 0.901 3.099 17 H -0.268 1.268 18 H -0.268 1.268 19 H -0.301 1.301 20 O -0.348 6.348 21 H 0.032 0.968 22 H 0.031 0.969 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 3.695 -13.664 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C -0.021 4.021 4 C 0.060 3.940 5 C 0.000 4.000 6 O -0.268 6.268 7 C -0.067 4.067 8 C -0.180 4.180 9 C -0.173 4.173 10 C 0.107 3.893 11 H 0.047 0.953 12 C -0.552 4.552 13 H 0.098 0.902 14 C -0.120 4.120 15 N -0.530 5.530 16 Si 0.730 3.270 17 H -0.193 1.193 18 H -0.193 1.193 19 H -0.228 1.228 20 O -0.268 6.268 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.098 0.902 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.237 3.122 -13.349 15.502 hybrid contribution -0.916 0.092 -0.359 0.988 sum -8.154 3.214 -13.708 16.270 Atomic orbital electron populations 1.22684 0.83283 1.02051 0.98813 1.88223 1.17261 1.26094 1.94886 1.22983 0.94479 0.85626 0.99005 1.22014 0.91202 0.91805 0.88940 1.22604 0.96309 0.85581 0.95548 1.88240 1.64526 1.28833 1.45205 1.22670 0.99509 0.95445 0.89089 1.22858 0.99756 0.95266 1.00113 1.23041 1.00303 1.00250 0.93687 1.21311 0.94559 0.85433 0.87996 0.95279 1.20886 1.01109 1.22102 1.11125 0.90202 1.25060 0.98077 0.95083 0.93827 1.69928 1.36363 1.27875 1.18823 0.86416 0.84098 0.80829 0.75701 1.19328 1.19303 1.22841 1.89283 1.85042 1.31907 1.20523 0.94935 0.95084 0.90182 0.93581 0.94012 0.93756 0.92800 0.90236 0.95207 0.94687 0.91194 0.90971 0.91494 0.90881 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.35 -6.91 8.43 -62.15 -0.52 -7.43 16 3 C 0.06 1.03 4.80 37.16 0.18 1.20 16 4 C 0.10 1.97 0.83 -90.05 -0.07 1.90 16 5 C 0.08 1.34 4.91 37.16 0.18 1.52 16 6 O -0.35 -6.69 8.42 -60.62 -0.51 -7.20 16 7 C 0.03 0.43 11.01 101.05 1.11 1.54 16 8 C -0.14 -2.31 6.28 -25.20 -0.16 -2.47 16 9 C -0.14 -2.66 6.55 -24.72 -0.16 -2.82 16 10 C 0.16 4.02 2.46 -26.83 -0.07 3.96 16 11 H 0.03 0.74 7.03 -51.93 -0.37 0.38 16 12 C -0.52 -15.08 9.39 -34.44 -0.32 -15.41 16 13 H 0.08 2.45 8.01 -52.49 -0.42 2.03 16 14 C 0.08 2.55 5.47 -17.82 -0.10 2.45 16 15 N -0.89 -28.07 13.96 55.43 0.77 -27.29 16 16 Si 0.90 24.46 26.57 -169.99 -4.52 19.94 16 17 H -0.27 -7.57 7.11 56.52 0.40 -7.17 16 18 H -0.27 -7.07 6.47 56.52 0.37 -6.71 16 19 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 20 O -0.35 -8.74 8.80 -48.31 -0.43 -9.16 16 21 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.97 7.69 -51.93 -0.40 0.58 16 32 H 0.07 1.00 7.70 -51.93 -0.40 0.60 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 35 H 0.27 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 285.91 15.07 4.31 4.31 Total: -1.00 -34.28 285.91 -5.01 -39.29 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -5.82 Total: -5.88 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 1.70 Total: -6.57 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -1.46 Total: -23.80 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.52 Total: 19.94 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.28 -5.01 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702579403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.497 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds