Wall clock time and date at job start Mon Mar 30 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99936 * 2 1 4 4 C 1.53000 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.98864 * 58.91714 * 4 3 2 6 6 O 1.42904 * 109.47127 * 306.08551 * 5 4 3 7 7 C 1.42897 * 113.99999 * 180.02562 * 6 5 4 8 8 C 1.54096 * 109.87967 * 180.02562 * 4 3 2 9 9 C 1.54815 * 104.18778 * 117.39897 * 8 4 3 10 10 C 1.54996 * 102.08953 * 339.11183 * 9 8 4 11 11 H 1.08993 * 110.62614 * 278.36857 * 10 9 8 12 12 C 1.50699 * 110.61321 * 155.52681 * 10 9 8 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 10 9 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 O 1.43741 * 109.87816 * 297.83550 * 4 3 2 21 21 H 1.09004 * 109.47157 * 299.99669 * 1 2 3 22 22 H 1.09002 * 109.47643 * 59.99592 * 1 2 3 23 23 H 1.08997 * 109.47315 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46984 * 60.00085 * 3 2 1 25 25 H 1.08998 * 109.47700 * 300.00169 * 3 2 1 26 26 H 1.08991 * 109.46993 * 66.08598 * 5 4 3 27 27 H 1.09002 * 109.46657 * 186.08927 * 5 4 3 28 28 H 1.08992 * 109.47194 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47252 * 299.99985 * 7 6 5 30 30 H 1.09004 * 109.47402 * 59.99952 * 7 6 5 31 31 H 1.08990 * 110.48969 * 358.71734 * 8 4 3 32 32 H 1.09006 * 110.48678 * 236.06589 * 8 4 3 33 33 H 1.09004 * 110.90218 * 220.91890 * 9 8 4 34 34 H 1.08990 * 110.91055 * 97.31482 * 9 8 4 35 35 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9977 0.4037 -1.2324 6 8 3.3137 -0.8499 -1.2859 7 6 3.6752 -1.6620 -2.4047 8 6 4.1721 2.5880 0.0000 9 6 4.9584 2.6473 1.3323 10 6 4.2648 1.5415 2.1681 11 1 3.3467 1.9192 2.6179 12 6 5.1965 1.0157 3.2295 13 1 6.1948 1.4176 3.3191 14 6 4.7742 0.0213 4.0863 15 7 5.5871 -0.4373 5.0129 16 14 3.0477 -0.6745 3.9309 17 1 3.0613 -1.8287 2.9965 18 1 2.1362 0.3748 3.4081 19 1 2.5728 -1.1230 5.2645 20 8 3.9733 0.5167 1.1944 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8465 -0.8899 26 1 3.7747 0.9779 -2.1315 27 1 5.0718 0.2291 -1.1698 28 1 3.1133 -2.5954 -2.3729 29 1 3.4458 -1.1308 -3.3285 30 1 4.7426 -1.8794 -2.3661 31 1 3.4003 3.3572 -0.0221 32 1 4.8486 2.7004 -0.8474 33 1 4.8459 3.6220 1.8072 34 1 6.0108 2.4125 1.1737 35 1 5.2902 -1.1371 5.6154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702579403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:58 Heat of formation + Delta-G solvation = -154.378525 kcal Electronic energy + Delta-G solvation = -17619.157713 eV Core-core repulsion = 14810.030916 eV Total energy + Delta-G solvation = -2809.126797 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84133 -38.30934 -38.08077 -34.88036 -33.13500 -32.28917 -28.84865 -28.29367 -26.94868 -26.02371 -24.37236 -21.95297 -21.06403 -19.12005 -17.54815 -17.48167 -17.19959 -16.77010 -16.51583 -16.12754 -15.82849 -15.66249 -14.79461 -14.39366 -14.34223 -14.29014 -13.45713 -13.21353 -12.89629 -12.86190 -12.45939 -12.33249 -12.20521 -11.98594 -11.89499 -11.68059 -11.36615 -11.30826 -10.87545 -10.48674 -10.36858 -10.12600 -8.39133 -6.49966 1.29535 1.40883 1.51997 2.34082 2.70325 2.93057 3.12114 3.59362 3.77607 3.97912 4.06903 4.23518 4.32399 4.36704 4.39135 4.54184 4.55360 4.59138 4.60254 4.66871 4.73279 4.82843 4.88561 4.89885 4.95646 5.09827 5.20283 5.44087 5.53117 6.18584 6.37591 6.40566 6.55220 6.73669 7.25743 8.74984 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.011236 C = 0.010037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.716840 B = 2491.390802 C = 2789.097257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.056 3.944 4 C 0.082 3.918 5 C 0.076 3.924 6 O -0.387 6.387 7 C 0.026 3.974 8 C -0.127 4.127 9 C -0.132 4.132 10 C 0.159 3.841 11 H 0.024 0.976 12 C -0.522 4.522 13 H 0.049 0.951 14 C 0.033 3.967 15 N -0.935 5.935 16 Si 0.961 3.039 17 H -0.288 1.288 18 H -0.258 1.258 19 H -0.289 1.289 20 O -0.385 6.385 21 H 0.032 0.968 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.926 4.962 -16.149 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.303 6.303 3 C -0.021 4.021 4 C 0.042 3.958 5 C 0.000 4.000 6 O -0.306 6.306 7 C -0.071 4.071 8 C -0.164 4.164 9 C -0.170 4.170 10 C 0.103 3.897 11 H 0.042 0.958 12 C -0.559 4.559 13 H 0.068 0.932 14 C -0.167 4.167 15 N -0.575 5.575 16 Si 0.788 3.212 17 H -0.214 1.214 18 H -0.182 1.182 19 H -0.216 1.216 20 O -0.306 6.306 21 H 0.051 0.949 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.912 4.408 -15.845 18.707 hybrid contribution -0.369 -0.311 0.325 0.582 sum -9.281 4.097 -15.521 18.542 Atomic orbital electron populations 1.22869 0.81263 1.03037 1.00149 1.88174 1.19659 1.27290 1.95181 1.23033 0.93400 0.85389 1.00284 1.22536 0.92599 0.93339 0.87352 1.22673 0.95501 0.85681 0.96183 1.88188 1.65155 1.29867 1.47365 1.22843 0.99710 0.95581 0.88958 1.22848 1.00455 0.94254 0.98868 1.22951 0.99627 0.99238 0.95138 1.21132 0.93745 0.86782 0.88010 0.95814 1.21253 1.00652 1.21364 1.12616 0.93239 1.25795 1.01237 0.95813 0.93893 1.70027 1.38097 1.29195 1.20194 0.85488 0.80732 0.79502 0.75482 1.21419 1.18183 1.21613 1.89161 1.85794 1.32978 1.22628 0.94927 0.92283 0.89541 0.94648 0.90102 0.89638 0.93894 0.89651 0.92456 0.94607 0.88001 0.87896 0.89515 0.92113 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.01 113.37 1.25 1.89 16 2 O -0.38 -14.44 8.43 -123.24 -1.04 -15.48 16 3 C 0.06 1.85 4.80 71.98 0.35 2.19 16 4 C 0.08 2.96 0.83 -10.42 -0.01 2.95 16 5 C 0.08 2.45 4.91 71.98 0.35 2.80 16 6 O -0.39 -14.01 8.42 -124.70 -1.05 -15.06 16 7 C 0.03 0.66 11.01 113.37 1.25 1.91 16 8 C -0.13 -3.62 6.28 31.58 0.20 -3.42 16 9 C -0.13 -4.94 6.55 31.90 0.21 -4.73 16 10 C 0.16 7.83 2.46 30.53 0.08 7.90 16 11 H 0.02 1.20 7.03 -2.39 -0.02 1.18 16 12 C -0.52 -31.32 9.39 25.60 0.24 -31.08 16 13 H 0.05 3.17 8.01 -2.91 -0.02 3.15 16 14 C 0.03 2.03 5.47 84.65 0.46 2.49 16 15 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 16 Si 0.96 51.76 26.57 68.60 1.82 53.58 16 17 H -0.29 -16.29 7.11 99.48 0.71 -15.58 16 18 H -0.26 -13.24 6.47 99.48 0.64 -12.59 16 19 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 20 O -0.39 -19.11 8.80 -136.48 -1.20 -20.31 16 21 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.04 1.22 8.12 -2.38 -0.02 1.20 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 2.28 7.69 -2.39 -0.02 2.26 16 32 H 0.10 2.32 7.70 -2.38 -0.02 2.30 16 33 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 35 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -76.62 285.91 4.18 -72.44 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 0.98 Total: 2.27 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 4.37 Total: -17.10 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.30 Total: -60.34 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -3.29 Total: -50.85 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 1.82 Total: 53.58 kcal Total: -76.62 4.18 -72.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702579403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.937 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds