Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.56768 * 2 1 4 4 C 1.54479 * 110.51044 * 122.68042 * 2 1 3 5 5 O 1.44433 * 104.80518 * 94.66492 * 4 2 1 6 6 C 1.44422 * 105.27452 * 40.51075 * 5 4 2 7 7 C 1.54481 * 104.80535 * 319.49061 * 6 5 4 8 8 H 1.08996 * 110.51163 * 265.33635 * 7 6 5 9 9 O 1.42903 * 110.51557 * 142.62456 * 7 6 5 10 10 C 1.42894 * 113.99892 * 95.35627 * 9 7 6 11 11 C 1.53001 * 109.46952 * 180.02562 * 10 9 7 12 12 O 1.42895 * 109.47293 * 64.99751 * 11 10 9 13 13 C 1.42897 * 114.00130 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47331 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99644 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00177 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00143 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00196 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47225 * 89.99639 * 18 16 14 20 20 H 1.48497 * 109.47430 * 210.00333 * 18 16 14 21 21 H 1.48497 * 109.46904 * 330.00151 * 18 16 14 22 22 H 1.09004 * 109.47328 * 182.68092 * 1 2 3 23 23 H 1.08997 * 109.46902 * 302.68243 * 1 2 3 24 24 H 1.09003 * 109.46996 * 62.67734 * 1 2 3 25 25 H 1.08997 * 110.37024 * 213.49486 * 4 2 1 26 26 H 1.08995 * 110.37315 * 335.83118 * 4 2 1 27 27 H 1.08995 * 110.37333 * 200.65712 * 6 5 4 28 28 H 1.08999 * 110.46531 * 78.36420 * 6 5 4 29 29 H 1.09003 * 109.47317 * 299.99832 * 10 9 7 30 30 H 1.09000 * 109.47039 * 60.00427 * 10 9 7 31 31 H 1.09001 * 109.47347 * 184.99908 * 11 10 9 32 32 H 1.09008 * 109.47140 * 304.99882 * 11 10 9 33 33 H 1.08999 * 109.47332 * 299.99865 * 13 12 11 34 34 H 1.09000 * 109.47713 * 60.00004 * 13 12 11 35 35 H 0.97004 * 120.00115 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0204 0.0000 4 6 2.0712 -0.7812 1.2178 5 8 2.3069 -2.1178 0.7238 6 6 2.8756 -1.9423 -0.5921 7 6 2.0714 -0.7814 -1.2181 8 1 1.2490 -1.1677 -1.8202 9 8 2.9242 0.0501 -2.0076 10 6 2.9272 -0.2753 -3.3990 11 6 3.8698 0.6732 -4.1426 12 8 5.2110 0.4553 -3.7005 13 6 6.1763 1.2958 -4.3359 14 6 7.5482 0.9816 -3.7972 15 1 7.6707 0.2168 -3.0446 16 6 8.6470 1.6704 -4.2653 17 7 9.8442 1.3966 -3.7949 18 14 8.4354 2.9928 -5.5676 19 1 8.2045 4.3036 -4.9091 20 1 9.6616 3.0669 -6.4018 21 1 7.2714 2.6590 -6.4272 22 1 -0.3634 -1.0266 0.0481 23 1 -0.3633 0.5549 0.8650 24 1 -0.3633 0.4717 -0.9130 25 1 3.0023 -0.3373 1.5701 26 1 1.3311 -0.7974 2.0177 27 1 2.7534 -2.8503 -1.1825 28 1 3.9304 -1.6771 -0.5191 29 1 3.2673 -1.3024 -3.5313 30 1 1.9182 -0.1723 -3.7984 31 1 3.8051 0.4838 -5.2140 32 1 3.5829 1.7048 -3.9380 33 1 6.1596 1.1197 -5.4114 34 1 5.9372 2.3401 -4.1350 35 1 10.6174 1.8810 -4.1244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703545584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = -143.303976 kcal Electronic energy + Delta-G solvation = -16229.002124 eV Core-core repulsion = 13420.355555 eV Total energy + Delta-G solvation = -2808.646569 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86864 -37.58105 -36.32301 -33.26148 -32.63224 -30.19305 -28.56044 -27.37436 -26.40232 -22.77994 -22.11015 -21.78427 -20.53003 -17.34781 -16.88503 -16.37667 -16.00485 -15.52768 -15.15348 -14.67907 -14.53452 -14.00223 -13.89893 -13.47837 -12.93532 -12.59487 -12.49962 -12.25761 -11.98021 -11.62851 -11.47946 -11.00356 -10.96561 -10.80200 -10.73709 -10.47153 -9.92797 -9.85150 -9.36138 -9.17353 -8.86370 -8.47503 -6.10711 -4.09731 3.25061 3.31743 3.32866 3.53845 4.03106 4.35833 4.39862 4.59519 4.63715 4.79456 4.99372 5.10712 5.20457 5.29077 5.33253 5.44797 5.49508 5.59954 5.67006 5.69847 5.77570 5.79852 5.86491 5.88722 5.99094 6.07807 6.58937 6.65298 6.99387 7.32387 7.59753 8.00984 8.66774 9.01073 9.48383 11.02400 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.004938 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.119397 B = 5668.975804 C = 5978.621353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 H 0.098 0.902 4 C 0.049 3.951 5 O -0.374 6.374 6 C 0.022 3.978 7 C 0.059 3.941 8 H 0.074 0.926 9 O -0.360 6.360 10 C 0.066 3.934 11 C 0.059 3.941 12 O -0.374 6.374 13 C 0.168 3.832 14 C -0.518 4.518 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.267 1.267 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.002 0.998 34 H -0.001 1.001 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.327 -2.677 4.164 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 H 0.116 0.884 4 C -0.027 4.027 5 O -0.293 6.293 6 C -0.055 4.055 7 C 0.000 4.000 8 H 0.092 0.908 9 O -0.278 6.278 10 C -0.010 4.010 11 C -0.019 4.019 12 O -0.293 6.293 13 C 0.093 3.907 14 C -0.556 4.556 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.001 -2.816 4.473 19.723 hybrid contribution -0.099 0.954 -1.191 1.529 sum -19.100 -1.862 3.282 19.469 Atomic orbital electron populations 1.21798 0.93673 1.02136 1.02128 1.22591 0.96552 1.01503 0.94171 0.88352 1.23475 1.00402 0.82836 0.96015 1.89101 1.83215 1.25953 1.31045 1.23988 0.98839 0.98745 0.83925 1.23525 0.92530 0.91066 0.92863 0.90849 1.88097 1.65540 1.55896 1.18317 1.22645 0.97575 0.99360 0.81461 1.22338 0.85383 0.97974 0.96164 1.87972 1.13565 1.62146 1.65580 1.20613 0.88555 0.89236 0.92304 1.20892 0.88171 1.22205 1.24353 0.89948 1.24766 0.94870 0.96873 0.96453 1.69879 0.98463 1.41827 1.43240 0.86843 0.78062 0.82581 0.82206 1.19906 1.20768 1.19150 0.92221 0.92063 0.92328 0.91699 0.89011 0.88966 0.90305 0.92474 0.92539 0.92771 0.93492 0.97992 0.98321 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.94 37.16 0.33 -0.87 16 2 C -0.13 -1.43 3.53 -89.05 -0.31 -1.75 16 3 H 0.10 1.16 8.00 -51.93 -0.42 0.75 16 4 C 0.05 0.55 7.18 37.93 0.27 0.83 16 5 O -0.37 -5.09 11.65 -35.23 -0.41 -5.50 16 6 C 0.02 0.30 7.38 37.93 0.28 0.58 16 7 C 0.06 0.75 3.26 -25.16 -0.08 0.67 16 8 H 0.07 0.79 7.41 -51.93 -0.39 0.41 16 9 O -0.36 -5.79 9.94 -40.09 -0.40 -6.19 16 10 C 0.07 0.96 6.16 37.16 0.23 1.19 16 11 C 0.06 1.04 6.32 37.16 0.23 1.28 16 12 O -0.37 -8.94 10.29 -40.09 -0.41 -9.36 16 13 C 0.17 4.35 4.76 36.01 0.17 4.53 16 14 C -0.52 -15.70 9.99 -34.44 -0.34 -16.04 16 15 H 0.08 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.00 0.06 7.20 -51.93 -0.37 -0.31 16 34 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 35 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -33.27 292.79 -5.81 -39.08 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -5.79 Total: -4.62 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 0.68 Total: -7.54 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 0.77 Total: -27.15 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -1.22 Total: -21.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.27 -5.81 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703545584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.227 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds