Wall clock time and date at job start Mon Mar 30 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.56768 * 2 1 4 4 C 1.54479 * 110.51044 * 122.68042 * 2 1 3 5 5 O 1.44433 * 104.80518 * 94.66492 * 4 2 1 6 6 C 1.44422 * 105.27452 * 40.51075 * 5 4 2 7 7 C 1.54481 * 104.80535 * 319.49061 * 6 5 4 8 8 H 1.08996 * 110.51163 * 265.33635 * 7 6 5 9 9 O 1.42903 * 110.51557 * 142.62456 * 7 6 5 10 10 C 1.42894 * 113.99892 * 95.35627 * 9 7 6 11 11 C 1.53001 * 109.46952 * 180.02562 * 10 9 7 12 12 O 1.42895 * 109.47293 * 64.99751 * 11 10 9 13 13 C 1.42897 * 114.00130 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47331 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99644 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00177 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00143 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00196 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47225 * 89.99639 * 18 16 14 20 20 H 1.48497 * 109.47430 * 210.00333 * 18 16 14 21 21 H 1.48497 * 109.46904 * 330.00151 * 18 16 14 22 22 H 1.09004 * 109.47328 * 182.68092 * 1 2 3 23 23 H 1.08997 * 109.46902 * 302.68243 * 1 2 3 24 24 H 1.09003 * 109.46996 * 62.67734 * 1 2 3 25 25 H 1.08997 * 110.37024 * 213.49486 * 4 2 1 26 26 H 1.08995 * 110.37315 * 335.83118 * 4 2 1 27 27 H 1.08995 * 110.37333 * 200.65712 * 6 5 4 28 28 H 1.08999 * 110.46531 * 78.36420 * 6 5 4 29 29 H 1.09003 * 109.47317 * 299.99832 * 10 9 7 30 30 H 1.09000 * 109.47039 * 60.00427 * 10 9 7 31 31 H 1.09001 * 109.47347 * 184.99908 * 11 10 9 32 32 H 1.09008 * 109.47140 * 304.99882 * 11 10 9 33 33 H 1.08999 * 109.47332 * 299.99865 * 13 12 11 34 34 H 1.09000 * 109.47713 * 60.00004 * 13 12 11 35 35 H 0.97004 * 120.00115 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0204 0.0000 4 6 2.0712 -0.7812 1.2178 5 8 2.3069 -2.1178 0.7238 6 6 2.8756 -1.9423 -0.5921 7 6 2.0714 -0.7814 -1.2181 8 1 1.2490 -1.1677 -1.8202 9 8 2.9242 0.0501 -2.0076 10 6 2.9272 -0.2753 -3.3990 11 6 3.8698 0.6732 -4.1426 12 8 5.2110 0.4553 -3.7005 13 6 6.1763 1.2958 -4.3359 14 6 7.5482 0.9816 -3.7972 15 1 7.6707 0.2168 -3.0446 16 6 8.6470 1.6704 -4.2653 17 7 9.8442 1.3966 -3.7949 18 14 8.4354 2.9928 -5.5676 19 1 8.2045 4.3036 -4.9091 20 1 9.6616 3.0669 -6.4018 21 1 7.2714 2.6590 -6.4272 22 1 -0.3634 -1.0266 0.0481 23 1 -0.3633 0.5549 0.8650 24 1 -0.3633 0.4717 -0.9130 25 1 3.0023 -0.3373 1.5701 26 1 1.3311 -0.7974 2.0177 27 1 2.7534 -2.8503 -1.1825 28 1 3.9304 -1.6771 -0.5191 29 1 3.2673 -1.3024 -3.5313 30 1 1.9182 -0.1723 -3.7984 31 1 3.8051 0.4838 -5.2140 32 1 3.5829 1.7048 -3.9380 33 1 6.1596 1.1197 -5.4114 34 1 5.9372 2.3401 -4.1350 35 1 10.6174 1.8810 -4.1244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703545584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:56 Heat of formation + Delta-G solvation = -168.061022 kcal Electronic energy + Delta-G solvation = -16230.075670 eV Core-core repulsion = 13420.355555 eV Total energy + Delta-G solvation = -2809.720115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86991 -39.00137 -37.77540 -34.90649 -34.11952 -31.60519 -29.95369 -29.06044 -27.21606 -24.07811 -23.83231 -23.19010 -21.44602 -19.10103 -18.41044 -17.64397 -17.31051 -16.80845 -16.48578 -16.32753 -15.90371 -15.43045 -15.10496 -14.67093 -14.41294 -14.05807 -13.66694 -13.31075 -13.17701 -13.06673 -12.95028 -12.54841 -12.32981 -11.99309 -11.82752 -11.81785 -11.63732 -11.38350 -10.95025 -10.92093 -10.43621 -10.37152 -8.38558 -6.47201 1.32699 1.36489 1.47301 2.28870 2.50573 2.93965 3.04934 3.07701 3.49757 3.72457 3.88304 4.07766 4.13479 4.22765 4.25872 4.48362 4.51267 4.53874 4.59063 4.68503 4.71047 4.76919 4.78443 4.83246 4.95090 4.99034 5.10858 5.30229 5.41726 5.65741 5.91483 6.28146 6.56943 6.73737 7.17489 8.78931 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.004938 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.119397 B = 5668.975804 C = 5978.621353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 H 0.087 0.913 4 C 0.043 3.957 5 O -0.387 6.387 6 C 0.019 3.981 7 C 0.057 3.943 8 H 0.100 0.900 9 O -0.392 6.392 10 C 0.066 3.934 11 C 0.046 3.954 12 O -0.406 6.406 13 C 0.179 3.821 14 C -0.549 4.549 15 H 0.026 0.974 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.959 3.041 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.242 1.242 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.010 0.990 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.864 -1.477 2.595 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 H 0.105 0.895 4 C -0.033 4.033 5 O -0.306 6.306 6 C -0.058 4.058 7 C -0.001 4.001 8 H 0.118 0.882 9 O -0.312 6.312 10 C -0.010 4.010 11 C -0.030 4.030 12 O -0.326 6.326 13 C 0.103 3.897 14 C -0.587 4.587 15 H 0.044 0.956 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.780 3.220 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.166 1.166 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.136 0.864 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.027 0.973 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.565 -1.633 2.917 21.823 hybrid contribution 0.695 0.489 -0.586 1.032 sum -20.870 -1.144 2.331 21.031 Atomic orbital electron populations 1.21767 0.91249 1.02789 1.03242 1.22623 0.98444 1.00455 0.93132 0.89468 1.23661 1.00727 0.81916 0.96983 1.89082 1.83062 1.27302 1.31149 1.23981 0.97303 1.00041 0.84465 1.23723 0.92473 0.90601 0.93346 0.88223 1.88058 1.66853 1.56908 1.19336 1.22753 0.98968 0.98325 0.80933 1.22773 0.82579 0.99436 0.98223 1.87923 1.16236 1.62104 1.66351 1.20330 0.86854 0.89866 0.92635 1.21183 0.91632 1.21725 1.24135 0.95588 1.25891 0.93925 0.99629 0.99141 1.70042 0.99766 1.43444 1.45031 0.85557 0.79235 0.78554 0.78663 1.18475 1.19682 1.16557 0.91770 0.90564 0.91630 0.92906 0.86370 0.87451 0.93537 0.92648 0.88063 0.90198 0.92854 0.96483 0.97278 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.94 71.98 0.64 -1.26 16 2 C -0.13 -2.67 3.53 -9.78 -0.03 -2.70 16 3 H 0.09 2.01 8.00 -2.39 -0.02 1.99 16 4 C 0.04 0.95 7.18 72.48 0.52 1.47 16 5 O -0.39 -10.40 11.65 -148.98 -1.74 -12.14 16 6 C 0.02 0.52 7.38 72.49 0.53 1.06 16 7 C 0.06 1.37 3.26 31.61 0.10 1.47 16 8 H 0.10 1.86 7.41 -2.39 -0.02 1.85 16 9 O -0.39 -12.33 9.94 -144.33 -1.44 -13.77 16 10 C 0.07 1.79 6.16 71.98 0.44 2.24 16 11 C 0.05 1.55 6.32 71.98 0.45 2.01 16 12 O -0.41 -19.56 10.29 -144.33 -1.49 -21.04 16 13 C 0.18 9.17 4.76 71.24 0.34 9.51 16 14 C -0.55 -34.40 9.99 25.60 0.26 -34.14 16 15 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 16 C 0.01 0.72 5.47 84.65 0.46 1.18 16 17 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 18 Si 0.96 43.66 27.47 68.60 1.88 45.54 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.12 1.91 7.87 -2.39 -0.02 1.89 16 27 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.85 8.11 -2.39 -0.02 1.83 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 34 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 35 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -74.98 292.79 2.24 -72.75 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.99 Total: 7.94 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.72 Total: -19.17 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.30 Total: -60.10 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -4.66 Total: -46.95 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -74.98 2.24 -72.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703545584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.315 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds