Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.55939 * 2 1 4 4 C 1.54481 * 110.50954 * 237.32295 * 2 1 3 5 5 O 1.44430 * 104.79813 * 217.37699 * 4 2 1 6 6 C 1.44633 * 105.37072 * 40.43438 * 5 4 2 7 7 C 1.54481 * 104.70004 * 319.65038 * 6 5 4 8 8 H 1.08997 * 110.51237 * 265.09935 * 7 6 5 9 9 O 1.42901 * 110.51020 * 142.51991 * 7 6 5 10 10 C 1.42899 * 113.99649 * 93.31318 * 9 7 6 11 11 C 1.53000 * 109.47405 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46726 * 64.99720 * 11 10 9 13 13 C 1.42899 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47140 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99703 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00389 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00212 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99688 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46644 * 90.00615 * 18 16 14 20 20 H 1.48499 * 109.46971 * 210.00103 * 18 16 14 21 21 H 1.48498 * 109.47274 * 330.01056 * 18 16 14 22 22 H 1.09003 * 109.46815 * 297.32319 * 1 2 3 23 23 H 1.09008 * 109.46835 * 57.31934 * 1 2 3 24 24 H 1.09001 * 109.46983 * 177.32018 * 1 2 3 25 25 H 1.08997 * 110.37335 * 336.20386 * 4 2 1 26 26 H 1.09002 * 110.37246 * 98.54799 * 4 2 1 27 27 H 1.09001 * 110.51313 * 200.81451 * 6 5 4 28 28 H 1.09007 * 110.34541 * 78.40681 * 6 5 4 29 29 H 1.09002 * 109.47445 * 59.99875 * 10 9 7 30 30 H 1.09002 * 109.47167 * 299.99793 * 10 9 7 31 31 H 1.09002 * 109.47398 * 184.99964 * 11 10 9 32 32 H 1.09001 * 109.47194 * 305.00145 * 11 10 9 33 33 H 1.09007 * 109.47484 * 299.99646 * 13 12 11 34 34 H 1.09004 * 109.47459 * 59.99983 * 13 12 11 35 35 H 0.97000 * 120.00168 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 3.2399 -1.4713 -0.7238 6 6 2.8780 -1.9422 0.5950 7 6 2.0715 -0.7813 1.2181 8 1 2.7201 -0.1464 1.8216 9 8 0.9933 -1.2878 2.0075 10 6 1.3106 -1.4454 3.3918 11 6 0.0898 -1.9899 4.1362 12 8 -0.2080 -3.3055 3.6644 13 6 -1.3381 -3.9082 4.2981 14 6 -1.5589 -5.2853 3.7274 15 1 -0.9021 -5.6624 2.9574 16 6 -2.6000 -6.0636 4.1874 17 7 -2.7930 -7.2651 3.6890 18 14 -3.7364 -5.4110 5.5187 19 1 -4.8763 -4.6964 4.8899 20 1 -4.2494 -6.5438 6.3305 21 1 -2.9869 -4.4742 6.3938 22 1 -0.3633 0.4717 0.9130 23 1 -0.3633 0.5549 -0.8651 24 1 -0.3633 -1.0266 -0.0480 25 1 1.3286 -1.4969 -1.5702 26 1 2.3465 -0.0938 -2.0178 27 1 3.7708 -2.1443 1.1867 28 1 2.2599 -2.8371 0.5215 29 1 1.5913 -0.4798 3.8125 30 1 2.1416 -2.1430 3.4970 31 1 0.3022 -2.0264 5.2047 32 1 -0.7652 -1.3377 3.9578 33 1 -1.1558 -3.9846 5.3701 34 1 -2.2226 -3.2957 4.1228 35 1 -3.5251 -7.8128 4.0129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703545588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = -141.692454 kcal Electronic energy + Delta-G solvation = -16395.029037 eV Core-core repulsion = 13586.452349 eV Total energy + Delta-G solvation = -2808.576688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85280 -37.55093 -36.32435 -33.18346 -32.61323 -30.10296 -28.59588 -27.34469 -26.19598 -22.89538 -22.20987 -21.80189 -20.29501 -17.17964 -16.78978 -16.52498 -16.07724 -15.41154 -15.21079 -14.72508 -14.52409 -14.04941 -13.85944 -13.39639 -12.93204 -12.45468 -12.36635 -12.24797 -11.85881 -11.62010 -11.22466 -11.03749 -10.90803 -10.78889 -10.61343 -10.42701 -9.93268 -9.86165 -9.40003 -9.17616 -8.86476 -8.47647 -6.10950 -4.09931 3.24758 3.31516 3.32617 3.55448 4.05812 4.35576 4.41471 4.60201 4.62692 4.81796 5.08883 5.15002 5.20230 5.31816 5.42422 5.46654 5.52185 5.68085 5.68607 5.79105 5.80209 5.84150 5.95154 6.05466 6.06441 6.40418 6.58746 6.65750 6.99192 7.32136 7.59613 8.00862 8.66584 9.00862 9.48160 11.02142 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.036995 B = 0.005256 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.683305 B = 5326.056180 C = 5507.811986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 H 0.085 0.915 4 C 0.048 3.952 5 O -0.376 6.376 6 C 0.022 3.978 7 C 0.057 3.943 8 H 0.071 0.929 9 O -0.354 6.354 10 C 0.065 3.935 11 C 0.060 3.940 12 O -0.373 6.373 13 C 0.168 3.832 14 C -0.518 4.518 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.267 1.267 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.002 0.998 34 H -0.001 1.001 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 16.384 -3.832 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 H 0.103 0.897 4 C -0.029 4.029 5 O -0.295 6.295 6 C -0.055 4.055 7 C -0.002 4.002 8 H 0.089 0.911 9 O -0.272 6.272 10 C -0.012 4.012 11 C -0.018 4.018 12 O -0.292 6.292 13 C 0.093 3.907 14 C -0.556 4.556 15 H 0.100 0.900 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.682 16.035 -4.147 18.700 hybrid contribution -0.761 0.454 1.219 1.507 sum 7.921 16.489 -2.927 18.525 Atomic orbital electron populations 1.21510 0.92712 1.03231 1.01387 1.22614 0.98355 0.99288 0.94001 0.89655 1.23543 0.88091 0.95133 0.96088 1.89125 1.35215 1.74118 1.31064 1.24040 0.99853 0.97743 0.83835 1.23428 0.89117 0.94554 0.93067 0.91070 1.88121 1.35207 1.85172 1.18745 1.22640 0.98050 0.98640 0.81836 1.22329 0.96103 0.87408 0.95956 1.87975 1.50564 1.26578 1.64108 1.20608 0.83623 0.94025 0.92424 1.20889 1.14576 0.97089 1.23053 0.89961 1.24768 0.97004 0.94694 0.96500 1.69875 1.31254 1.09401 1.42856 0.86847 0.81508 0.78961 0.82392 1.19911 1.20774 1.19155 0.91933 0.93081 0.91306 0.91581 0.89162 0.88977 0.90307 0.92601 0.92532 0.92847 0.93518 0.98027 0.98341 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.20 37.16 0.30 -1.22 16 2 C -0.12 -1.37 3.72 -89.05 -0.33 -1.70 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.05 0.54 7.19 37.93 0.27 0.82 16 5 O -0.38 -5.15 11.65 -35.23 -0.41 -5.56 16 6 C 0.02 0.30 7.40 37.93 0.28 0.58 16 7 C 0.06 0.71 3.56 -25.16 -0.09 0.62 16 8 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 9 O -0.35 -5.49 8.27 -40.09 -0.33 -5.82 16 10 C 0.06 0.93 6.17 37.16 0.23 1.16 16 11 C 0.06 1.04 6.32 37.16 0.23 1.28 16 12 O -0.37 -8.84 10.29 -40.09 -0.41 -9.26 16 13 C 0.17 4.34 4.76 36.01 0.17 4.51 16 14 C -0.52 -15.63 9.99 -34.44 -0.34 -15.97 16 15 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 18 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 22 H 0.06 0.75 7.91 -51.93 -0.41 0.34 16 23 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 24 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 25 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.20 8.09 -51.92 -0.42 0.78 16 29 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 34 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 35 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 290.93 15.07 4.38 4.38 Total: -1.00 -32.92 290.93 -5.82 -38.74 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.79 Total: -4.34 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 0.63 Total: -7.89 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.15 Total: -20.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.92 -5.82 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703545588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.952 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds