Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.55939 * 2 1 4 4 C 1.54481 * 110.50954 * 237.32295 * 2 1 3 5 5 O 1.44430 * 104.79813 * 217.37699 * 4 2 1 6 6 C 1.44633 * 105.37072 * 40.43438 * 5 4 2 7 7 C 1.54481 * 104.70004 * 319.65038 * 6 5 4 8 8 H 1.08997 * 110.51237 * 265.09935 * 7 6 5 9 9 O 1.42901 * 110.51020 * 142.51991 * 7 6 5 10 10 C 1.42899 * 113.99649 * 93.31318 * 9 7 6 11 11 C 1.53000 * 109.47405 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46726 * 64.99720 * 11 10 9 13 13 C 1.42899 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47140 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99703 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00389 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00212 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99688 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46644 * 90.00615 * 18 16 14 20 20 H 1.48499 * 109.46971 * 210.00103 * 18 16 14 21 21 H 1.48498 * 109.47274 * 330.01056 * 18 16 14 22 22 H 1.09003 * 109.46815 * 297.32319 * 1 2 3 23 23 H 1.09008 * 109.46835 * 57.31934 * 1 2 3 24 24 H 1.09001 * 109.46983 * 177.32018 * 1 2 3 25 25 H 1.08997 * 110.37335 * 336.20386 * 4 2 1 26 26 H 1.09002 * 110.37246 * 98.54799 * 4 2 1 27 27 H 1.09001 * 110.51313 * 200.81451 * 6 5 4 28 28 H 1.09007 * 110.34541 * 78.40681 * 6 5 4 29 29 H 1.09002 * 109.47445 * 59.99875 * 10 9 7 30 30 H 1.09002 * 109.47167 * 299.99793 * 10 9 7 31 31 H 1.09002 * 109.47398 * 184.99964 * 11 10 9 32 32 H 1.09001 * 109.47194 * 305.00145 * 11 10 9 33 33 H 1.09007 * 109.47484 * 299.99646 * 13 12 11 34 34 H 1.09004 * 109.47459 * 59.99983 * 13 12 11 35 35 H 0.97000 * 120.00168 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 3.2399 -1.4713 -0.7238 6 6 2.8780 -1.9422 0.5950 7 6 2.0715 -0.7813 1.2181 8 1 2.7201 -0.1464 1.8216 9 8 0.9933 -1.2878 2.0075 10 6 1.3106 -1.4454 3.3918 11 6 0.0898 -1.9899 4.1362 12 8 -0.2080 -3.3055 3.6644 13 6 -1.3381 -3.9082 4.2981 14 6 -1.5589 -5.2853 3.7274 15 1 -0.9021 -5.6624 2.9574 16 6 -2.6000 -6.0636 4.1874 17 7 -2.7930 -7.2651 3.6890 18 14 -3.7364 -5.4110 5.5187 19 1 -4.8763 -4.6964 4.8899 20 1 -4.2494 -6.5438 6.3305 21 1 -2.9869 -4.4742 6.3938 22 1 -0.3633 0.4717 0.9130 23 1 -0.3633 0.5549 -0.8651 24 1 -0.3633 -1.0266 -0.0480 25 1 1.3286 -1.4969 -1.5702 26 1 2.3465 -0.0938 -2.0178 27 1 3.7708 -2.1443 1.1867 28 1 2.2599 -2.8371 0.5215 29 1 1.5913 -0.4798 3.8125 30 1 2.1416 -2.1430 3.4970 31 1 0.3022 -2.0264 5.2047 32 1 -0.7652 -1.3377 3.9578 33 1 -1.1558 -3.9846 5.3701 34 1 -2.2226 -3.2957 4.1228 35 1 -3.5251 -7.8128 4.0129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703545588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = -165.979086 kcal Electronic energy + Delta-G solvation = -16396.082184 eV Core-core repulsion = 13586.452349 eV Total energy + Delta-G solvation = -2809.629835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84909 -38.96379 -37.74341 -34.90890 -34.09543 -31.51836 -29.95405 -29.04836 -27.12448 -24.06444 -23.90405 -23.33749 -21.24177 -19.11172 -18.10501 -17.65324 -17.49200 -16.71783 -16.45924 -16.38920 -15.92626 -15.50032 -15.01152 -14.67693 -14.45098 -14.13362 -13.61394 -13.28107 -13.17406 -13.04818 -12.88523 -12.53982 -12.17767 -11.98152 -11.85664 -11.75365 -11.48544 -11.37407 -10.94830 -10.92731 -10.45872 -10.36837 -8.38398 -6.46903 1.32590 1.36335 1.47169 2.28833 2.53667 2.94102 3.06395 3.10751 3.51257 3.71940 3.87622 4.09067 4.21400 4.24149 4.28953 4.49701 4.53622 4.56026 4.60417 4.66560 4.70586 4.75593 4.80612 4.83372 4.99443 5.03635 5.15294 5.42129 5.44050 5.67045 5.91891 6.30106 6.57229 6.74554 7.17735 8.79046 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.036995 B = 0.005256 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.683305 B = 5326.056180 C = 5507.811986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 H 0.115 0.885 4 C 0.042 3.958 5 O -0.390 6.390 6 C 0.020 3.980 7 C 0.054 3.946 8 H 0.100 0.900 9 O -0.383 6.383 10 C 0.065 3.935 11 C 0.047 3.953 12 O -0.405 6.405 13 C 0.179 3.821 14 C -0.548 4.548 15 H 0.025 0.975 16 C 0.012 3.988 17 N -0.943 5.943 18 Si 0.959 3.041 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.242 1.242 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.016 0.984 34 H 0.009 0.991 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 19.278 -2.276 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 H 0.133 0.867 4 C -0.034 4.034 5 O -0.309 6.309 6 C -0.057 4.057 7 C -0.004 4.004 8 H 0.118 0.882 9 O -0.302 6.302 10 C -0.011 4.011 11 C -0.029 4.029 12 O -0.325 6.325 13 C 0.104 3.896 14 C -0.586 4.586 15 H 0.044 0.956 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.780 3.220 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.166 1.166 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.027 0.973 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.574 18.947 -2.603 20.959 hybrid contribution -0.637 -0.476 0.617 1.006 sum 7.938 18.471 -1.986 20.202 Atomic orbital electron populations 1.21448 0.93433 1.01308 1.02205 1.22679 0.97673 1.00482 0.92960 0.86663 1.23726 0.87299 0.95254 0.97127 1.89107 1.36178 1.74403 1.31250 1.24036 1.00233 0.97148 0.84330 1.23632 0.88808 0.94386 0.93618 0.88167 1.88095 1.36784 1.85712 1.19596 1.22731 0.96277 1.00573 0.81486 1.22759 0.97834 0.84431 0.97895 1.87927 1.49745 1.29920 1.64937 1.20317 0.84910 0.91764 0.92635 1.21179 1.14593 1.00082 1.22751 0.95614 1.25891 0.98709 0.94631 0.99375 1.70039 1.32336 1.11157 1.44721 0.85564 0.78833 0.78983 0.78665 1.18469 1.19703 1.16579 0.92234 0.90949 0.94691 0.93002 0.86343 0.87449 0.93683 0.88154 0.92806 0.90416 0.92867 0.96585 0.97308 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.20 71.98 0.59 -2.24 16 2 C -0.12 -2.40 3.72 -9.77 -0.04 -2.43 16 3 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.04 0.91 7.19 72.49 0.52 1.43 16 5 O -0.39 -10.46 11.65 -148.98 -1.74 -12.19 16 6 C 0.02 0.52 7.40 72.49 0.54 1.06 16 7 C 0.05 1.26 3.56 31.61 0.11 1.37 16 8 H 0.10 1.76 7.84 -2.39 -0.02 1.74 16 9 O -0.38 -11.56 8.27 -144.34 -1.19 -12.75 16 10 C 0.07 1.73 6.17 71.98 0.44 2.18 16 11 C 0.05 1.57 6.32 71.98 0.45 2.02 16 12 O -0.41 -19.38 10.29 -144.34 -1.49 -20.87 16 13 C 0.18 9.18 4.76 71.24 0.34 9.52 16 14 C -0.55 -34.29 9.99 25.60 0.26 -34.03 16 15 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 16 C 0.01 0.71 5.47 84.66 0.46 1.17 16 17 N -0.94 -60.32 13.96 21.45 0.30 -60.02 16 18 Si 0.96 43.64 27.47 68.60 1.88 45.52 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.24 -10.04 6.54 99.48 0.65 -9.38 16 22 H 0.06 1.35 7.91 -2.39 -0.02 1.33 16 23 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.03 1.00 7.86 -2.39 -0.02 0.98 16 25 H 0.05 1.24 7.83 -2.39 -0.02 1.22 16 26 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.04 1.47 8.09 -2.38 -0.02 1.45 16 29 H 0.10 1.78 8.11 -2.39 -0.02 1.77 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.02 0.79 7.20 -2.38 -0.02 0.77 16 34 H 0.01 0.45 7.57 -2.38 -0.02 0.43 16 35 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -74.73 290.93 2.43 -72.29 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.99 Total: 7.98 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.68 Total: -19.96 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.30 Total: -60.02 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -4.42 Total: -45.82 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -74.73 2.43 -72.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703545588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.686 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds