Wall clock time and date at job start Mon Mar 30 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99766 * 2 1 4 4 O 1.42902 * 109.47018 * 307.63415 * 3 2 1 5 5 C 1.42902 * 113.99838 * 306.08749 * 4 3 2 6 6 C 1.52996 * 109.47184 * 187.63406 * 3 2 1 7 7 C 1.52998 * 109.46951 * 299.99780 * 6 3 2 8 8 C 1.53003 * 109.47269 * 300.00102 * 7 6 3 9 9 C 1.53005 * 109.47159 * 59.99885 * 8 7 6 10 10 C 1.52998 * 109.47124 * 300.00203 * 9 8 7 11 11 O 1.42906 * 109.47314 * 300.00271 * 10 9 8 12 12 C 1.50693 * 109.47291 * 179.97438 * 10 9 8 13 13 H 1.08002 * 120.00115 * 235.23635 * 12 10 9 14 14 C 1.37879 * 119.99764 * 55.23389 * 12 10 9 15 15 N 1.31511 * 120.00439 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99821 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46983 * 90.00006 * 16 14 12 18 18 H 1.48503 * 109.47042 * 209.99977 * 16 14 12 19 19 H 1.48497 * 109.47278 * 330.00067 * 16 14 12 20 20 H 1.08997 * 109.47293 * 43.93517 * 1 2 3 21 21 H 1.08998 * 109.46993 * 163.93451 * 1 2 3 22 22 H 1.08996 * 109.47123 * 283.92903 * 1 2 3 23 23 H 1.08996 * 109.47528 * 64.67303 * 5 4 3 24 24 H 1.09002 * 109.47171 * 184.68144 * 5 4 3 25 25 H 1.09002 * 109.46999 * 304.67923 * 5 4 3 26 26 H 1.09000 * 109.47072 * 180.02562 * 6 3 2 27 27 H 1.08996 * 109.47211 * 59.99564 * 6 3 2 28 28 H 1.08996 * 109.47704 * 180.02562 * 7 6 3 29 29 H 1.08997 * 109.47233 * 59.99877 * 7 6 3 30 30 H 1.09000 * 109.47306 * 299.99951 * 8 7 6 31 31 H 1.09001 * 109.47200 * 179.97438 * 8 7 6 32 32 H 1.08996 * 109.47152 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.46958 * 59.99853 * 9 8 7 34 34 H 0.96704 * 113.99119 * 299.99951 * 11 10 9 35 35 H 0.96998 * 120.00927 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.4523 2.0752 -1.0670 5 6 1.5509 1.4498 -2.3481 6 6 3.5237 1.1899 -0.1916 7 6 4.1209 0.3659 0.9508 8 6 3.8268 1.0550 2.2848 9 6 2.3132 1.1706 2.4764 10 6 1.7160 1.9947 1.3340 11 8 2.2972 3.3002 1.3338 12 6 0.2252 2.1080 1.5223 13 1 -0.4439 1.7973 0.7335 14 6 -0.2846 2.6083 2.7017 15 7 0.5301 2.9860 3.6624 16 14 -2.1326 2.7494 2.9349 17 1 -2.6535 1.4934 3.5318 18 1 -2.4318 3.8886 3.8393 19 1 -2.7816 2.9784 1.6190 20 1 -0.3634 0.7400 -0.7130 21 1 -0.3633 -0.9875 -0.2844 22 1 -0.3633 0.2474 0.9974 23 1 0.9541 0.5378 -2.3541 24 1 1.1811 2.1311 -3.1144 25 1 2.5927 1.2035 -2.5530 26 1 3.9670 2.1857 -0.1912 27 1 3.7332 0.6989 -1.1419 28 1 5.1992 0.2839 0.8146 29 1 3.6776 -0.6299 0.9508 30 1 4.2701 2.0508 2.2848 31 1 4.2519 0.4677 3.0987 32 1 2.1038 1.6620 3.4265 33 1 1.8700 0.1748 2.4763 34 1 2.1500 3.7962 2.1508 35 1 0.1716 3.3383 4.4920 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704592779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:50 Heat of formation + Delta-G solvation = -152.952134 kcal Electronic energy + Delta-G solvation = -18550.516842 eV Core-core repulsion = 15741.451898 eV Total energy + Delta-G solvation = -2809.064944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24065 -37.94740 -36.59605 -35.66530 -34.12458 -30.92852 -30.12472 -28.36350 -27.31096 -25.78025 -23.06400 -22.56541 -20.47929 -18.91827 -18.29989 -17.28828 -16.74248 -16.68818 -15.89848 -15.50976 -15.27282 -15.05062 -14.42874 -14.23540 -13.95494 -13.87573 -13.43764 -13.24382 -12.99804 -12.86026 -12.51136 -12.34006 -12.24427 -11.77687 -11.69233 -11.44608 -11.24632 -11.14273 -10.60127 -10.48728 -10.14650 -9.83484 -8.07788 -6.22780 1.39303 1.42787 1.51020 2.41125 2.80322 3.08085 3.13303 3.90859 4.04792 4.20966 4.37408 4.45550 4.57826 4.61277 4.67422 4.71836 4.77422 4.83144 4.89902 4.92765 5.02372 5.24884 5.28473 5.31577 5.35731 5.52710 5.67298 5.77661 5.85154 6.11959 6.25928 6.74965 6.77428 7.39737 7.49589 8.89538 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.013645 C = 0.011059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.583321 B = 2051.597424 C = 2531.330878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.288 3.712 4 O -0.403 6.403 5 C 0.020 3.980 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.130 4.130 10 C 0.240 3.760 11 O -0.588 6.588 12 C -0.553 4.553 13 H 0.075 0.925 14 C 0.027 3.973 15 N -0.911 5.911 16 Si 0.948 3.052 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.275 1.275 20 H 0.039 0.961 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.371 0.629 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -5.028 -5.710 8.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.211 3.789 4 O -0.324 6.324 5 C -0.076 4.076 6 C -0.158 4.158 7 C -0.141 4.141 8 C -0.153 4.153 9 C -0.168 4.168 10 C 0.201 3.799 11 O -0.396 6.396 12 C -0.591 4.591 13 H 0.093 0.907 14 C -0.172 4.172 15 N -0.552 5.552 16 Si 0.774 3.226 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.200 1.200 20 H 0.057 0.943 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.219 0.781 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.495 -5.132 -6.111 8.712 hybrid contribution -1.414 0.463 0.842 1.710 sum 2.081 -4.669 -5.270 7.341 Atomic orbital electron populations 1.23270 0.80823 1.00715 1.02511 1.87820 1.21130 1.28354 1.94351 1.22596 0.90639 0.78877 0.86765 1.88201 1.81669 1.46037 1.16512 1.22848 1.01007 0.98642 0.85103 1.21879 0.92520 1.01416 1.00017 1.21398 1.00615 0.98554 0.93500 1.21532 0.96603 0.99931 0.97227 1.22041 0.94007 0.98795 1.01977 1.19054 0.91006 0.80871 0.88995 1.86123 1.79432 1.30584 1.43426 1.22477 0.93602 1.41945 1.01049 0.90683 1.25606 1.01643 0.94413 0.95576 1.69744 1.35379 1.43679 1.06438 0.85713 0.81279 0.77782 0.77796 1.19902 1.20999 1.19989 0.94261 0.89612 0.91817 0.93899 0.88739 0.93170 0.90881 0.90589 0.89905 0.91940 0.93026 0.91837 0.89935 0.94674 0.78104 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.89 8.43 113.37 0.96 1.85 16 2 O -0.40 -16.74 8.35 -126.21 -1.05 -17.80 16 3 C 0.29 12.70 0.30 30.59 0.01 12.71 16 4 O -0.40 -18.04 8.79 -121.88 -1.07 -19.11 16 5 C 0.02 0.66 10.11 113.37 1.15 1.81 16 6 C -0.12 -4.57 4.75 30.59 0.15 -4.43 16 7 C -0.10 -3.57 5.78 30.59 0.18 -3.39 16 8 C -0.12 -4.51 5.78 30.60 0.18 -4.33 16 9 C -0.13 -6.16 4.49 30.60 0.14 -6.02 16 10 C 0.24 11.96 0.28 -11.54 0.00 11.96 16 11 O -0.59 -30.97 11.51 -139.78 -1.61 -32.58 16 12 C -0.55 -29.42 5.64 25.60 0.14 -29.27 16 13 H 0.08 3.98 4.28 -2.91 -0.01 3.97 16 14 C 0.03 1.41 5.20 84.66 0.44 1.85 16 15 N -0.91 -48.63 9.68 21.45 0.21 -48.43 16 16 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H 0.04 1.60 5.51 -2.39 -0.01 1.59 16 21 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 22 H 0.06 2.88 5.31 -2.39 -0.01 2.87 16 23 H 0.04 1.36 6.60 -2.39 -0.02 1.35 16 24 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.05 1.49 6.38 -2.39 -0.02 1.47 16 26 H 0.07 2.92 7.68 -2.39 -0.02 2.90 16 27 H 0.08 2.50 6.58 -2.39 -0.02 2.48 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.18 7.68 -2.39 -0.02 2.16 16 30 H 0.05 2.08 7.68 -2.39 -0.02 2.06 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.08 4.31 5.70 -2.39 -0.01 4.29 16 33 H 0.03 1.70 7.68 -2.39 -0.02 1.68 16 34 H 0.37 19.97 7.54 -74.05 -0.56 19.41 16 35 H 0.26 13.57 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -58.79 259.47 2.37 -56.41 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.54 Total: 34.29 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 3.33 Total: -17.27 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.21 Total: -48.43 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -3.73 Total: -69.48 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -58.79 2.37 -56.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704592779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.538 kcal (2) G-P(sol) polarization free energy of solvation -58.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds