Wall clock time and date at job start Mon Mar 30 2020 03:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 H 1.07999 * 119.99476 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99914 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48490 * 109.47117 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47015 * 120.00082 * 8 6 4 11 11 H 1.48507 * 109.47126 * 239.99903 * 8 6 4 12 12 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00463 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99675 * 359.72090 * 12 2 1 15 15 H 1.09003 * 110.33577 * 321.07690 * 14 12 2 16 16 C 1.54900 * 110.37605 * 83.45240 * 14 12 2 17 17 C 1.55141 * 101.65787 * 155.90043 * 16 14 12 18 18 H 1.08999 * 110.70434 * 205.96652 * 17 16 14 19 19 F 1.39894 * 110.70905 * 82.72628 * 17 16 14 20 20 C 1.54317 * 103.01686 * 324.34443 * 17 16 14 21 21 N 1.47443 * 107.23286 * 22.28383 * 20 17 16 22 22 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 23 23 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 24 24 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 25 25 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 26 26 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 27 27 H 0.97000 * 120.00447 * 179.97438 * 7 6 4 28 28 H 1.09008 * 110.98940 * 273.99241 * 16 14 12 29 29 H 1.08995 * 110.99274 * 37.80297 * 16 14 12 30 30 H 1.08998 * 109.89373 * 262.88244 * 20 17 16 31 31 H 1.08998 * 110.02423 * 141.76263 * 20 17 16 32 32 H 1.00900 * 111.00122 * 123.25617 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4378 3.4169 -3.4340 9 1 2.8618 2.4159 -4.3673 10 1 2.7997 4.7373 -3.6679 11 1 4.9005 3.5258 -3.6667 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0053 15 1 0.5101 -2.4015 0.6510 16 6 0.9663 -2.8594 -1.4348 17 6 0.8146 -4.3987 -1.3141 18 1 0.9715 -4.8783 -2.2802 19 9 -0.4397 -4.7327 -0.7922 20 6 1.9363 -4.7820 -0.3261 21 7 2.2660 -3.5731 0.4509 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5138 26 1 3.1500 1.1384 0.5137 27 1 4.0301 4.4440 -0.8504 28 1 0.0183 -2.3936 -1.7041 29 1 1.7450 -2.5988 -2.1515 30 1 2.8147 -5.1206 -0.8755 31 1 1.5911 -5.5701 0.3431 32 1 2.1633 -3.7402 1.4407 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707404090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:00 Heat of formation + Delta-G solvation = -76.464590 kcal Electronic energy + Delta-G solvation = -16507.241518 eV Core-core repulsion = 13610.325769 eV Total energy + Delta-G solvation = -2896.915749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.81345 -39.38905 -36.98451 -34.69950 -32.59977 -30.11872 -29.45533 -27.52328 -25.75458 -23.50783 -21.50443 -21.31301 -18.44572 -17.29940 -16.70333 -16.48272 -15.86161 -15.19053 -14.99002 -14.88356 -14.13655 -13.96819 -13.24246 -12.97909 -12.75894 -12.33639 -12.16434 -11.91102 -11.68813 -11.56858 -11.21659 -11.07234 -11.01578 -10.81187 -10.56337 -10.13926 -9.58677 -9.02214 -8.42446 -8.25791 -7.58863 -6.02765 -4.07491 3.30368 3.35958 3.38704 3.42155 3.71040 4.15226 4.29770 4.38367 4.47134 4.70796 4.78069 5.10800 5.22167 5.26878 5.33079 5.46096 5.56978 5.73150 5.83608 5.93021 6.05279 6.21878 6.64631 7.09947 7.27213 7.47506 7.58600 7.94255 8.25457 8.46996 8.93222 9.18394 9.57790 11.05355 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.038582 B = 0.006590 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.548382 B = 4247.984283 C = 4342.997676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.512 3.488 13 O -0.516 6.516 14 C 0.058 3.942 15 H 0.072 0.928 16 C -0.139 4.139 17 C 0.063 3.937 18 H 0.101 0.899 19 F -0.210 7.210 20 C 0.029 3.971 21 N -0.656 5.656 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 -14.060 0.272 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.339 5.339 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.296 3.704 13 O -0.390 6.390 14 C -0.055 4.055 15 H 0.090 0.910 16 C -0.178 4.178 17 C 0.026 3.974 18 H 0.119 0.881 19 F -0.191 7.191 20 C -0.101 4.101 21 N -0.287 5.287 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.205 -13.688 -0.051 15.468 hybrid contribution -0.855 0.168 -0.515 1.012 sum -8.060 -13.519 -0.566 15.750 Atomic orbital electron populations 1.21672 0.81762 1.02487 1.00340 1.48159 1.05975 1.07720 1.72056 1.19280 0.92556 0.78030 0.97474 1.21478 1.36370 1.06158 0.92347 0.92443 1.24944 0.95400 0.96427 0.97415 1.69944 1.38479 1.14354 1.30652 0.86446 0.78098 0.78276 0.84610 1.19838 1.20978 1.20863 1.19954 0.88104 0.84162 0.78161 1.90668 1.13534 1.86663 1.48179 1.22403 0.94083 0.92331 0.96709 0.91036 1.23264 1.03967 0.93630 0.96922 1.22870 0.79488 0.96767 0.98239 0.88077 1.92815 1.43901 1.93616 1.88778 1.23243 0.97402 0.93050 0.96417 1.61338 1.55112 1.03524 1.08695 0.93884 0.90685 0.92653 0.95025 0.93843 0.92778 0.88822 0.87999 0.88806 0.91557 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 9.92 59.84 0.59 1.91 16 2 N -0.61 -13.04 2.86 -182.96 -0.52 -13.56 16 3 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 4 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 C 0.51 10.91 6.96 -10.98 -0.08 10.83 16 13 O -0.52 -13.50 16.17 5.55 0.09 -13.41 16 14 C 0.06 0.90 2.70 -67.34 -0.18 0.72 16 15 H 0.07 0.98 7.21 -51.93 -0.37 0.61 16 16 C -0.14 -1.86 5.96 -24.60 -0.15 -2.01 16 17 C 0.06 0.69 4.75 -24.91 -0.12 0.57 16 18 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 19 F -0.21 -2.54 17.19 2.25 0.04 -2.50 16 20 C 0.03 0.32 7.39 -2.84 -0.02 0.30 16 21 N -0.66 -9.54 6.64 -105.05 -0.70 -10.23 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.05 0.74 5.21 -51.93 -0.27 0.47 16 25 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 26 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.13 6.90 -51.92 -0.36 0.77 16 29 H 0.10 1.51 8.05 -51.93 -0.42 1.09 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.35 4.38 8.91 -39.29 -0.35 4.03 16 LS Contribution 273.19 15.07 4.12 4.12 Total: -1.00 -34.00 273.19 -5.89 -39.89 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.23 Total: -0.25 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.40 Total: 5.13 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.48 Total: -49.92 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -34.00 -5.89 -39.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.578 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds