Wall clock time and date at job start Mon Mar 30 2020 03:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 H 1.07999 * 119.99476 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99914 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48490 * 109.47117 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47015 * 120.00082 * 8 6 4 11 11 H 1.48507 * 109.47126 * 239.99903 * 8 6 4 12 12 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00463 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99675 * 359.72090 * 12 2 1 15 15 H 1.09003 * 110.33577 * 321.07690 * 14 12 2 16 16 C 1.54900 * 110.37605 * 83.45240 * 14 12 2 17 17 C 1.55141 * 101.65787 * 155.90043 * 16 14 12 18 18 H 1.08999 * 110.70434 * 205.96652 * 17 16 14 19 19 F 1.39894 * 110.70905 * 82.72628 * 17 16 14 20 20 C 1.54317 * 103.01686 * 324.34443 * 17 16 14 21 21 N 1.47443 * 107.23286 * 22.28383 * 20 17 16 22 22 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 23 23 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 24 24 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 25 25 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 26 26 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 27 27 H 0.97000 * 120.00447 * 179.97438 * 7 6 4 28 28 H 1.09008 * 110.98940 * 273.99241 * 16 14 12 29 29 H 1.08995 * 110.99274 * 37.80297 * 16 14 12 30 30 H 1.08998 * 109.89373 * 262.88244 * 20 17 16 31 31 H 1.08998 * 110.02423 * 141.76263 * 20 17 16 32 32 H 1.00900 * 111.00122 * 123.25617 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4378 3.4169 -3.4340 9 1 2.8618 2.4159 -4.3673 10 1 2.7997 4.7373 -3.6679 11 1 4.9005 3.5258 -3.6667 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0053 15 1 0.5101 -2.4015 0.6510 16 6 0.9663 -2.8594 -1.4348 17 6 0.8146 -4.3987 -1.3141 18 1 0.9715 -4.8783 -2.2802 19 9 -0.4397 -4.7327 -0.7922 20 6 1.9363 -4.7820 -0.3261 21 7 2.2660 -3.5731 0.4509 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5138 26 1 3.1500 1.1384 0.5137 27 1 4.0301 4.4440 -0.8504 28 1 0.0183 -2.3936 -1.7041 29 1 1.7450 -2.5988 -2.1515 30 1 2.8147 -5.1206 -0.8755 31 1 1.5911 -5.5701 0.3431 32 1 2.1633 -3.7402 1.4407 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707404090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:00 Heat of formation + Delta-G solvation = -102.375013 kcal Electronic energy + Delta-G solvation = -16508.365078 eV Core-core repulsion = 13610.325769 eV Total energy + Delta-G solvation = -2898.039309 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.69018 -40.90671 -38.26018 -36.51879 -34.72139 -31.30774 -30.69283 -29.24793 -27.32761 -25.33887 -22.99268 -22.22219 -19.96429 -18.67613 -18.49877 -17.89827 -17.11885 -16.85063 -16.22837 -16.08396 -15.85942 -15.39331 -14.53590 -14.31816 -14.04143 -13.92787 -13.66170 -13.46157 -13.16866 -12.91115 -12.76809 -12.73934 -12.52525 -12.19870 -12.02586 -11.92365 -11.66735 -10.65281 -10.61356 -9.44521 -9.39004 -8.22415 -6.37574 1.36301 1.39034 1.50735 1.80824 2.21567 2.41277 3.06911 3.14194 3.23441 3.38622 3.71118 3.85374 3.94127 4.06253 4.28933 4.35195 4.59849 4.67192 4.73664 4.81732 4.95795 4.99918 5.12409 5.22120 5.55686 5.65699 5.86532 6.06087 6.29208 6.70958 6.81171 7.28917 7.53445 8.85010 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.038582 B = 0.006590 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.548382 B = 4247.984283 C = 4342.997676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.502 3.498 13 O -0.578 6.578 14 C 0.069 3.931 15 H 0.097 0.903 16 C -0.141 4.141 17 C 0.075 3.925 18 H 0.132 0.868 19 F -0.213 7.213 20 C 0.029 3.971 21 N -0.683 5.683 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.024 0.976 26 H -0.005 1.005 27 H 0.267 0.733 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 -15.535 -0.995 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C 0.138 3.862 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.457 6.457 14 C -0.044 4.044 15 H 0.115 0.885 16 C -0.180 4.180 17 C 0.038 3.962 18 H 0.149 0.851 19 F -0.194 7.194 20 C -0.100 4.100 21 N -0.315 5.315 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.042 0.958 26 H 0.013 0.987 27 H 0.076 0.924 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.997 -15.190 -1.309 17.703 hybrid contribution -0.306 0.616 -0.050 0.690 sum -9.303 -14.574 -1.359 17.344 Atomic orbital electron populations 1.21958 0.78179 1.03920 1.02492 1.48184 1.08214 1.06295 1.71745 1.18752 0.91006 0.80346 0.96127 1.21742 1.36758 1.06469 0.92998 0.92699 1.25898 0.94899 0.96442 1.02108 1.70064 1.39014 1.14861 1.33078 0.85340 0.77861 0.78449 0.78989 1.18918 1.19347 1.20820 1.21099 0.87824 0.85854 0.76263 1.90625 1.16450 1.87738 1.50899 1.22264 0.93788 0.89366 0.98957 0.88499 1.23287 1.03981 0.95957 0.94747 1.22866 0.79038 0.94787 0.99483 0.85081 1.92817 1.44185 1.93454 1.88968 1.23335 0.97899 0.92076 0.96669 1.61197 1.55830 1.04673 1.09802 0.91308 0.91187 0.89294 0.95838 0.98653 0.92396 0.87218 0.89877 0.88310 0.89275 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 9.92 127.77 1.27 3.60 16 2 N -0.61 -26.60 2.86 -851.14 -2.43 -29.03 16 3 C 0.26 14.34 5.16 85.64 0.44 14.79 16 4 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 5 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 6 C 0.01 0.31 5.46 84.65 0.46 0.77 16 7 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 8 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.50 21.66 6.96 87.66 0.61 22.27 16 13 O -0.58 -31.55 16.17 -3.04 -0.05 -31.60 16 14 C 0.07 2.04 2.70 44.64 0.12 2.16 16 15 H 0.10 2.36 7.21 -2.39 -0.02 2.35 16 16 C -0.14 -3.42 5.96 31.98 0.19 -3.23 16 17 C 0.08 1.37 4.75 31.77 0.15 1.52 16 18 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 19 F -0.21 -4.29 17.19 44.97 0.77 -3.52 16 20 C 0.03 0.56 7.39 86.65 0.64 1.20 16 21 N -0.68 -18.85 6.64 -486.28 -3.23 -22.08 16 22 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 23 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 24 H 0.09 2.09 5.21 -2.39 -0.01 2.08 16 25 H 0.02 1.31 8.07 -2.39 -0.02 1.30 16 26 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.11 2.27 6.90 -2.38 -0.02 2.26 16 29 H 0.08 2.36 8.05 -2.39 -0.02 2.34 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 1.34 8.12 -2.39 -0.02 1.32 16 32 H 0.35 8.44 8.91 -89.69 -0.80 7.64 16 Total: -1.00 -76.62 273.19 1.83 -74.79 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.33 Total: 9.35 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 4.12 Total: 11.66 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -5.38 Total: -107.95 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.60 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.77 Total: -3.52 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.62 1.83 -74.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.582 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds