Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99760 * 2 1 4 4 C 1.50703 * 109.47126 * 90.00617 * 3 2 1 5 5 H 1.08002 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00216 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 C 1.34775 * 120.00124 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99888 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00014 * 359.97438 * 12 2 1 15 15 H 1.09003 * 110.36763 * 42.34641 * 14 12 2 16 16 C 1.54383 * 110.41132 * 279.99804 * 14 12 2 17 17 C 1.54253 * 105.06350 * 217.36898 * 16 14 12 18 18 H 1.08996 * 110.32676 * 118.89583 * 17 16 14 19 19 F 1.39899 * 110.32357 * 241.10930 * 17 16 14 20 20 C 1.54390 * 105.05834 * 359.97438 * 17 16 14 21 21 N 1.48555 * 104.59418 * 23.85572 * 20 17 16 22 22 H 1.08997 * 109.47395 * 89.99923 * 1 2 3 23 23 H 1.08996 * 109.46863 * 210.00108 * 1 2 3 24 24 H 1.09005 * 109.46912 * 329.99670 * 1 2 3 25 25 H 1.08999 * 109.47567 * 330.00444 * 3 2 1 26 26 H 1.09001 * 109.47193 * 210.00368 * 3 2 1 27 27 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 28 28 H 1.09003 * 110.31895 * 336.26536 * 16 14 12 29 29 H 1.08997 * 110.31987 * 98.36912 * 16 14 12 30 30 H 1.09000 * 110.40846 * 142.62883 * 20 17 16 31 31 H 1.08997 * 110.41288 * 264.95576 * 20 17 16 32 32 H 1.00899 * 111.00001 * 200.96187 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0960 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.3448 3.2578 2.9128 8 14 3.7327 3.9293 0.2530 9 1 2.6808 4.9076 -0.1233 10 1 4.9603 4.6565 0.6647 11 1 4.0394 3.0598 -0.9111 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.5414 -2.4231 -0.6885 16 6 0.8992 -2.8133 1.4245 17 6 1.0513 -4.3436 1.5445 18 1 1.7471 -4.5933 2.3454 19 9 -0.1932 -4.9388 1.7774 20 6 1.6160 -4.7987 0.1815 21 7 2.2892 -3.5929 -0.3661 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6083 2.0285 -0.5137 26 1 3.1498 1.1385 -0.5139 27 1 3.8216 4.0837 3.0900 28 1 1.5205 -2.3117 2.1666 29 1 -0.1445 -2.5242 1.5477 30 1 2.3351 -5.6062 0.3186 31 1 0.8083 -5.1176 -0.4773 32 1 2.3944 -3.6609 -1.3673 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707404092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -71.589263 kcal Electronic energy + Delta-G solvation = -16481.683041 eV Core-core repulsion = 13584.978702 eV Total energy + Delta-G solvation = -2896.704339 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.75255 -39.58130 -37.12136 -34.88153 -32.55408 -30.23471 -29.50196 -27.98101 -25.94064 -23.39149 -21.52119 -21.15790 -18.56106 -17.36155 -16.92045 -16.72708 -16.08133 -15.11072 -15.00102 -14.60546 -14.18424 -13.76837 -13.57243 -13.29244 -12.81056 -12.57176 -12.32414 -12.00320 -11.96225 -11.68552 -11.47255 -11.02588 -10.90311 -10.74980 -10.51790 -10.10374 -9.54674 -9.15538 -8.59397 -8.54992 -7.70455 -6.08832 -4.07632 3.25426 3.26899 3.34891 3.39776 3.56877 4.16785 4.24450 4.39634 4.41804 4.71737 4.80962 5.00683 5.14022 5.26316 5.30145 5.39573 5.55713 5.62316 5.80000 5.81934 6.00679 6.13806 6.45033 6.68234 6.97282 7.10844 7.33437 7.60859 8.23714 8.46791 8.92997 9.00376 9.51475 11.04570 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.043142 B = 0.006565 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.863449 B = 4264.104841 C = 4385.317445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.600 5.600 3 C 0.216 3.784 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.514 3.486 13 O -0.515 6.515 14 C 0.050 3.950 15 H 0.070 0.930 16 C -0.139 4.139 17 C 0.086 3.914 18 H 0.101 0.899 19 F -0.211 7.211 20 C 0.014 3.986 21 N -0.635 5.635 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 -12.919 -6.751 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.333 5.333 3 C 0.096 3.904 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.299 3.701 13 O -0.390 6.390 14 C -0.064 4.064 15 H 0.088 0.912 16 C -0.177 4.177 17 C 0.049 3.951 18 H 0.119 0.881 19 F -0.192 7.192 20 C -0.116 4.116 21 N -0.265 5.265 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.791 -12.668 -6.115 15.620 hybrid contribution -0.637 0.571 -1.160 1.441 sum -7.429 -12.097 -7.275 15.952 Atomic orbital electron populations 1.21727 0.81196 1.03096 1.00405 1.47834 1.06140 1.07017 1.72297 1.19663 0.92499 0.79860 0.98390 1.21330 1.37016 1.07141 0.91264 0.90769 1.24862 0.95220 0.97372 0.95587 1.69896 1.41506 1.23517 1.18666 0.86856 0.78910 0.80763 0.83271 1.20119 1.20906 1.18844 1.19912 0.88048 0.84172 0.77968 1.90683 1.13477 1.86662 1.48150 1.22462 0.94218 0.92220 0.97489 0.91215 1.22893 1.03439 0.94684 0.96721 1.22300 0.81358 0.92552 0.98910 0.88095 1.92817 1.45015 1.85450 1.95913 1.23494 0.98429 0.94691 0.94941 1.63324 1.43928 1.00429 1.18791 0.93746 0.92224 0.90391 0.95659 0.94099 0.92556 0.88481 0.88993 0.88592 0.92748 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 9.95 59.84 0.60 1.80 16 2 N -0.60 -12.27 2.86 -182.96 -0.52 -12.79 16 3 C 0.22 5.30 4.23 -5.19 -0.02 5.28 16 4 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 8 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.36 6.54 56.52 0.37 -6.00 16 12 C 0.51 10.48 6.86 -10.99 -0.08 10.41 16 13 O -0.52 -12.92 16.14 5.56 0.09 -12.84 16 14 C 0.05 0.73 2.60 -67.23 -0.18 0.56 16 15 H 0.07 0.86 7.39 -51.93 -0.38 0.47 16 16 C -0.14 -1.90 5.78 -25.35 -0.15 -2.04 16 17 C 0.09 1.01 4.85 -25.35 -0.12 0.89 16 18 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 19 F -0.21 -2.62 17.10 2.25 0.04 -2.58 16 20 C 0.01 0.16 7.26 -2.18 -0.02 0.14 16 21 N -0.63 -8.74 6.86 -103.96 -0.71 -9.45 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.76 5.11 -51.93 -0.27 0.49 16 24 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 25 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 26 H 0.04 1.08 6.48 -51.93 -0.34 0.75 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 28 H 0.10 1.55 7.85 -51.93 -0.41 1.14 16 29 H 0.09 1.11 6.91 -51.93 -0.36 0.75 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.35 4.14 8.92 -39.29 -0.35 3.79 16 LS Contribution 269.22 15.07 4.06 4.06 Total: -1.00 -34.34 269.22 -5.54 -39.88 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.19 Total: 0.32 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.40 Total: 3.46 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.46 Total: -49.21 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.34 -5.54 -39.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.712 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds