Wall clock time and date at job start Mon Mar 30 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99760 * 2 1 4 4 C 1.50703 * 109.47126 * 90.00617 * 3 2 1 5 5 H 1.08002 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00216 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 C 1.34775 * 120.00124 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99888 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00014 * 359.97438 * 12 2 1 15 15 H 1.09003 * 110.36763 * 42.34641 * 14 12 2 16 16 C 1.54383 * 110.41132 * 279.99804 * 14 12 2 17 17 C 1.54253 * 105.06350 * 217.36898 * 16 14 12 18 18 H 1.08996 * 110.32676 * 118.89583 * 17 16 14 19 19 F 1.39899 * 110.32357 * 241.10930 * 17 16 14 20 20 C 1.54390 * 105.05834 * 359.97438 * 17 16 14 21 21 N 1.48555 * 104.59418 * 23.85572 * 20 17 16 22 22 H 1.08997 * 109.47395 * 89.99923 * 1 2 3 23 23 H 1.08996 * 109.46863 * 210.00108 * 1 2 3 24 24 H 1.09005 * 109.46912 * 329.99670 * 1 2 3 25 25 H 1.08999 * 109.47567 * 330.00444 * 3 2 1 26 26 H 1.09001 * 109.47193 * 210.00368 * 3 2 1 27 27 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 28 28 H 1.09003 * 110.31895 * 336.26536 * 16 14 12 29 29 H 1.08997 * 110.31987 * 98.36912 * 16 14 12 30 30 H 1.09000 * 110.40846 * 142.62883 * 20 17 16 31 31 H 1.08997 * 110.41288 * 264.95576 * 20 17 16 32 32 H 1.00899 * 111.00001 * 200.96187 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0960 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.3448 3.2578 2.9128 8 14 3.7327 3.9293 0.2530 9 1 2.6808 4.9076 -0.1233 10 1 4.9603 4.6565 0.6647 11 1 4.0394 3.0598 -0.9111 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.5414 -2.4231 -0.6885 16 6 0.8992 -2.8133 1.4245 17 6 1.0513 -4.3436 1.5445 18 1 1.7471 -4.5933 2.3454 19 9 -0.1932 -4.9388 1.7774 20 6 1.6160 -4.7987 0.1815 21 7 2.2892 -3.5929 -0.3661 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6083 2.0285 -0.5137 26 1 3.1498 1.1385 -0.5139 27 1 3.8216 4.0837 3.0900 28 1 1.5205 -2.3117 2.1666 29 1 -0.1445 -2.5242 1.5477 30 1 2.3351 -5.6062 0.3186 31 1 0.8083 -5.1176 -0.4773 32 1 2.3944 -3.6609 -1.3673 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707404092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:01 Heat of formation + Delta-G solvation = -98.697506 kcal Electronic energy + Delta-G solvation = -16482.858543 eV Core-core repulsion = 13584.978702 eV Total energy + Delta-G solvation = -2897.879841 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.69959 -41.02544 -38.35835 -36.59450 -34.70116 -31.53842 -30.78842 -29.49582 -27.38622 -25.06057 -22.98878 -22.17886 -20.03596 -19.15067 -18.45421 -17.95055 -17.39418 -16.76411 -16.32210 -15.89886 -15.62866 -15.07440 -14.81175 -14.65987 -14.34522 -13.98653 -13.76694 -13.56695 -13.32031 -13.10131 -12.88941 -12.74401 -12.40622 -12.03807 -11.91155 -11.75703 -11.73086 -10.82447 -10.68270 -9.64176 -9.39541 -8.34434 -6.39682 1.31737 1.36684 1.47438 1.73340 2.17280 2.31343 2.99608 3.11206 3.28743 3.30484 3.66957 3.76425 3.95314 4.06121 4.27052 4.37858 4.54935 4.63197 4.71964 4.77031 4.83242 4.91668 4.97161 4.97447 5.45414 5.49823 5.64120 6.19505 6.24198 6.61600 6.69753 7.21363 7.43646 8.82609 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.043142 B = 0.006565 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.863449 B = 4264.104841 C = 4385.317445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.224 3.776 4 C -0.537 4.537 5 H 0.028 0.972 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.250 1.250 10 H -0.282 1.282 11 H -0.256 1.256 12 C 0.504 3.496 13 O -0.575 6.575 14 C 0.062 3.938 15 H 0.107 0.893 16 C -0.140 4.140 17 C 0.089 3.911 18 H 0.105 0.895 19 F -0.211 7.211 20 C 0.023 3.977 21 N -0.659 5.659 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.019 0.981 27 H 0.268 0.732 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 -13.718 -8.849 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.340 5.340 3 C 0.101 3.899 4 C -0.576 4.576 5 H 0.046 0.954 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.174 1.174 10 H -0.208 1.208 11 H -0.180 1.180 12 C 0.291 3.709 13 O -0.454 6.454 14 C -0.051 4.051 15 H 0.125 0.875 16 C -0.179 4.179 17 C 0.052 3.948 18 H 0.123 0.877 19 F -0.192 7.192 20 C -0.107 4.107 21 N -0.291 5.291 22 H 0.100 0.900 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.372 -13.494 -8.223 17.882 hybrid contribution -0.196 0.757 -0.412 0.884 sum -8.568 -12.737 -8.635 17.612 Atomic orbital electron populations 1.22037 0.77789 1.03995 1.03072 1.47954 1.08353 1.05854 1.71840 1.19330 0.92739 0.82495 0.95308 1.21573 1.36879 1.06725 0.92423 0.95361 1.25878 0.95265 0.98999 0.98679 1.70055 1.42762 1.24460 1.21315 0.85688 0.78825 0.78963 0.79341 1.17382 1.20769 1.18007 1.20994 0.87795 0.85885 0.76179 1.90640 1.16262 1.87712 1.50792 1.22351 0.94432 0.89400 0.98910 0.87510 1.22879 1.03736 0.96090 0.95172 1.22265 0.81385 0.91037 1.00070 0.87678 1.92820 1.45123 1.85266 1.96002 1.23536 0.99308 0.93653 0.94163 1.63244 1.44808 1.01198 1.19861 0.89989 0.89672 0.91316 0.93158 0.96288 0.92263 0.91873 0.87085 0.87035 0.90426 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.03 9.95 127.77 1.27 3.30 16 2 N -0.61 -24.51 2.86 -851.15 -2.43 -26.94 16 3 C 0.22 10.96 4.23 85.63 0.36 11.33 16 4 C -0.54 -31.93 9.94 25.60 0.25 -31.67 16 5 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 8 Si 0.95 44.63 27.47 68.60 1.88 46.52 16 9 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.26 -11.63 6.54 99.48 0.65 -10.98 16 12 C 0.50 20.49 6.86 87.66 0.60 21.09 16 13 O -0.58 -29.70 16.14 -3.03 -0.05 -29.75 16 14 C 0.06 1.71 2.60 44.32 0.12 1.83 16 15 H 0.11 2.18 7.39 -2.39 -0.02 2.16 16 16 C -0.14 -3.63 5.78 31.49 0.18 -3.45 16 17 C 0.09 1.90 4.85 31.49 0.15 2.06 16 18 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 19 F -0.21 -4.63 17.10 44.97 0.77 -3.86 16 20 C 0.02 0.41 7.26 86.45 0.63 1.04 16 21 N -0.66 -16.87 6.86 -482.83 -3.31 -20.18 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.08 1.90 5.11 -2.39 -0.01 1.89 16 24 H 0.07 2.04 8.07 -2.38 -0.02 2.02 16 25 H 0.05 2.21 7.50 -2.39 -0.02 2.19 16 26 H 0.02 1.02 6.48 -2.39 -0.02 1.00 16 27 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 28 H 0.06 2.07 7.85 -2.39 -0.02 2.05 16 29 H 0.11 2.39 6.91 -2.39 -0.02 2.38 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 32 H 0.36 7.73 8.92 -89.69 -0.80 6.93 16 Total: -1.00 -78.23 269.22 1.47 -76.77 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.28 Total: 10.84 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.03 Total: 6.55 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -5.44 Total: -107.07 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.75 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.77 Total: -3.86 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -78.23 1.47 -76.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.930 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds