Wall clock time and date at job start Mon Mar 30 2020 03:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 119.99979 * 2 1 4 4 C 1.50700 * 109.47317 * 269.99918 * 3 2 1 5 5 H 1.07999 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99911 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00345 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99638 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47059 * 89.99798 * 8 6 4 10 10 H 1.48500 * 109.46946 * 209.99643 * 8 6 4 11 11 H 1.48491 * 109.47218 * 330.00036 * 8 6 4 12 12 C 1.34778 * 120.00508 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00345 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99739 * 0.02562 * 12 2 1 15 15 H 1.09004 * 110.46382 * 39.03795 * 14 12 2 16 16 C 1.54388 * 110.41022 * 276.62782 * 14 12 2 17 17 C 1.54268 * 105.05642 * 217.36775 * 16 14 12 18 18 H 1.08999 * 110.31779 * 241.10254 * 17 16 14 19 19 F 1.39900 * 110.32087 * 118.99700 * 17 16 14 20 20 C 1.54372 * 105.06240 * 359.97438 * 17 16 14 21 21 N 1.48558 * 110.41283 * 161.45343 * 14 12 2 22 22 H 1.08998 * 109.47323 * 269.99886 * 1 2 3 23 23 H 1.08993 * 109.47324 * 30.00438 * 1 2 3 24 24 H 1.09009 * 109.46819 * 149.99720 * 1 2 3 25 25 H 1.08999 * 109.46946 * 30.00037 * 3 2 1 26 26 H 1.09002 * 109.47074 * 149.99727 * 3 2 1 27 27 H 0.97002 * 120.00326 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.32370 * 336.26072 * 16 14 12 29 29 H 1.08993 * 110.32428 * 98.47309 * 16 14 12 30 30 H 1.08998 * 110.41580 * 265.07256 * 20 17 16 31 31 H 1.09002 * 110.41063 * 142.62725 * 20 17 16 32 32 H 1.00901 * 110.99875 * 277.81505 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4389 3.4164 -3.4339 9 1 2.3092 4.2596 -3.9010 10 1 4.6994 4.1989 -3.4962 11 1 3.5558 2.2191 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.5082 -2.4059 -0.6431 16 6 0.9711 -2.8548 1.4377 17 6 1.1280 -4.3879 1.5054 18 1 0.1684 -4.8574 1.7218 19 9 2.0697 -4.7374 2.4792 20 6 1.6232 -4.8028 0.1034 21 7 2.2698 -3.5811 -0.4417 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5138 26 1 3.1499 1.1384 0.5139 27 1 4.0317 4.4431 -0.8503 28 1 1.6292 -2.3745 2.1619 29 1 -0.0654 -2.5718 1.6208 30 1 0.7831 -5.1011 -0.5237 31 1 2.3478 -5.6135 0.1807 32 1 2.3250 -3.6199 -1.4485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707404094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:03 Heat of formation + Delta-G solvation = -74.671666 kcal Electronic energy + Delta-G solvation = -16429.557005 eV Core-core repulsion = 13532.719003 eV Total energy + Delta-G solvation = -2896.838002 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.60625 -39.44704 -37.02354 -34.73462 -32.61051 -30.15991 -29.37283 -27.53664 -25.76035 -23.59026 -21.64786 -21.12473 -18.44455 -17.46748 -16.60137 -16.46025 -15.99171 -15.03268 -14.96917 -14.53016 -14.18049 -13.96413 -13.50875 -12.97956 -12.70596 -12.28194 -12.18038 -11.87432 -11.79971 -11.51418 -11.19229 -11.06130 -10.94801 -10.87568 -10.56090 -10.14699 -9.62163 -9.00073 -8.43034 -8.41040 -7.61814 -6.03423 -4.08390 3.29996 3.33504 3.37584 3.42775 3.71892 4.20950 4.36431 4.39430 4.48085 4.59328 4.82154 4.98903 5.17953 5.26706 5.31614 5.43276 5.52348 5.66130 5.78668 5.89572 6.02890 6.18601 6.52291 7.07354 7.20648 7.46214 7.55787 7.93145 8.24271 8.43623 8.91711 9.15104 9.56810 11.04667 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.047200 B = 0.006154 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.079640 B = 4548.801383 C = 4662.556668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.605 5.605 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.511 3.489 13 O -0.515 6.515 14 C 0.046 3.954 15 H 0.072 0.928 16 C -0.138 4.138 17 C 0.090 3.910 18 H 0.093 0.907 19 F -0.204 7.204 20 C 0.011 3.989 21 N -0.636 5.636 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -13.840 2.072 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.296 3.704 13 O -0.389 6.389 14 C -0.067 4.067 15 H 0.089 0.911 16 C -0.177 4.177 17 C 0.053 3.947 18 H 0.111 0.889 19 F -0.185 7.185 20 C -0.119 4.119 21 N -0.267 5.267 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.197 -13.570 2.643 16.604 hybrid contribution -0.718 0.327 -1.591 1.776 sum -9.914 -13.242 1.052 16.576 Atomic orbital electron populations 1.21667 0.81762 1.02403 1.00340 1.48167 1.05989 1.07728 1.71934 1.19284 0.92589 0.77962 0.97480 1.21428 1.36566 1.06248 0.92294 0.92546 1.24941 0.95336 0.96415 0.97445 1.69929 1.38345 1.14347 1.30737 0.86491 0.77687 0.78560 0.84640 1.20663 1.21043 1.19928 1.19854 0.88098 0.84167 0.78325 1.90690 1.13494 1.86607 1.48130 1.22547 0.94693 0.92667 0.96794 0.91080 1.22886 1.03182 0.94710 0.96896 1.22249 0.90310 0.95691 0.86418 0.88944 1.92849 1.67841 1.93208 1.64553 1.23560 0.98832 0.94974 0.94522 1.63377 1.46352 1.00212 1.16721 0.93769 0.90730 0.92716 0.95000 0.93811 0.92693 0.88849 0.89259 0.92544 0.88577 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.21 59.84 0.61 1.88 16 2 N -0.60 -12.87 2.86 -182.96 -0.52 -13.40 16 3 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 4 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.51 10.89 6.84 -10.99 -0.08 10.82 16 13 O -0.51 -13.67 16.17 5.56 0.09 -13.58 16 14 C 0.05 0.70 2.76 -67.22 -0.19 0.51 16 15 H 0.07 0.88 6.32 -51.93 -0.33 0.56 16 16 C -0.14 -1.75 6.32 -25.34 -0.16 -1.91 16 17 C 0.09 1.00 4.84 -25.35 -0.12 0.88 16 18 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 19 F -0.20 -2.92 17.10 2.25 0.04 -2.88 16 20 C 0.01 0.12 7.27 -2.17 -0.02 0.10 16 21 N -0.64 -9.46 6.88 -103.93 -0.72 -10.18 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 24 H 0.05 0.67 5.95 -51.92 -0.31 0.36 16 25 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 26 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.09 1.44 7.75 -51.93 -0.40 1.04 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.35 4.66 8.92 -39.29 -0.35 4.31 16 LS Contribution 274.72 15.07 4.14 4.14 Total: -1.00 -35.00 274.72 -5.92 -40.92 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.27 Total: -0.88 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.40 Total: 5.02 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.50 Total: -49.71 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.00 -5.92 -40.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.754 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds