Wall clock time and date at job start Mon Mar 30 2020 03:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 119.99979 * 2 1 4 4 C 1.50700 * 109.47317 * 269.99918 * 3 2 1 5 5 H 1.07999 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99911 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00345 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99638 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47059 * 89.99798 * 8 6 4 10 10 H 1.48500 * 109.46946 * 209.99643 * 8 6 4 11 11 H 1.48491 * 109.47218 * 330.00036 * 8 6 4 12 12 C 1.34778 * 120.00508 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00345 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99739 * 0.02562 * 12 2 1 15 15 H 1.09004 * 110.46382 * 39.03795 * 14 12 2 16 16 C 1.54388 * 110.41022 * 276.62782 * 14 12 2 17 17 C 1.54268 * 105.05642 * 217.36775 * 16 14 12 18 18 H 1.08999 * 110.31779 * 241.10254 * 17 16 14 19 19 F 1.39900 * 110.32087 * 118.99700 * 17 16 14 20 20 C 1.54372 * 105.06240 * 359.97438 * 17 16 14 21 21 N 1.48558 * 110.41283 * 161.45343 * 14 12 2 22 22 H 1.08998 * 109.47323 * 269.99886 * 1 2 3 23 23 H 1.08993 * 109.47324 * 30.00438 * 1 2 3 24 24 H 1.09009 * 109.46819 * 149.99720 * 1 2 3 25 25 H 1.08999 * 109.46946 * 30.00037 * 3 2 1 26 26 H 1.09002 * 109.47074 * 149.99727 * 3 2 1 27 27 H 0.97002 * 120.00326 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.32370 * 336.26072 * 16 14 12 29 29 H 1.08993 * 110.32428 * 98.47309 * 16 14 12 30 30 H 1.08998 * 110.41580 * 265.07256 * 20 17 16 31 31 H 1.09002 * 110.41063 * 142.62725 * 20 17 16 32 32 H 1.00901 * 110.99875 * 277.81505 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4389 3.4164 -3.4339 9 1 2.3092 4.2596 -3.9010 10 1 4.6994 4.1989 -3.4962 11 1 3.5558 2.2191 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.5082 -2.4059 -0.6431 16 6 0.9711 -2.8548 1.4377 17 6 1.1280 -4.3879 1.5054 18 1 0.1684 -4.8574 1.7218 19 9 2.0697 -4.7374 2.4792 20 6 1.6232 -4.8028 0.1034 21 7 2.2698 -3.5811 -0.4417 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5138 26 1 3.1499 1.1384 0.5139 27 1 4.0317 4.4431 -0.8503 28 1 1.6292 -2.3745 2.1619 29 1 -0.0654 -2.5718 1.6208 30 1 0.7831 -5.1011 -0.5237 31 1 2.3478 -5.6135 0.1807 32 1 2.3250 -3.6199 -1.4485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707404094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:03 Heat of formation + Delta-G solvation = -102.333275 kcal Electronic energy + Delta-G solvation = -16430.756502 eV Core-core repulsion = 13532.719003 eV Total energy + Delta-G solvation = -2898.037500 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.57436 -40.93336 -38.27438 -36.53816 -34.73122 -31.27947 -30.64405 -29.19225 -27.29195 -25.37110 -23.08953 -22.04175 -19.95052 -18.75423 -18.41894 -17.91720 -17.32923 -16.72023 -16.27680 -15.87034 -15.56296 -15.28269 -14.78665 -14.35507 -14.21038 -13.83233 -13.51049 -13.41771 -13.12933 -12.94943 -12.82291 -12.63421 -12.45108 -12.21579 -12.05890 -11.78824 -11.71740 -10.65552 -10.56972 -9.53224 -9.39999 -8.23463 -6.39025 1.35337 1.39179 1.49259 1.80407 2.24317 2.40269 3.05793 3.21780 3.35500 3.45403 3.68456 3.86389 3.97468 4.14593 4.34947 4.47641 4.58787 4.71438 4.74758 4.87980 4.97883 4.98617 5.07770 5.21130 5.54311 5.62662 5.85242 6.04783 6.22525 6.69469 6.80957 7.27695 7.52713 8.83742 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.047200 B = 0.006154 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.079640 B = 4548.801383 C = 4662.556668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.971 3.029 9 H -0.260 1.260 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.498 3.502 13 O -0.585 6.585 14 C 0.060 3.940 15 H 0.112 0.888 16 C -0.137 4.137 17 C 0.085 3.915 18 H 0.144 0.856 19 F -0.228 7.228 20 C 0.015 3.985 21 N -0.676 5.676 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.025 0.975 26 H -0.008 1.008 27 H 0.267 0.733 28 H 0.055 0.945 29 H 0.133 0.867 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.326 -15.334 0.877 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.286 3.714 13 O -0.465 6.465 14 C -0.053 4.053 15 H 0.129 0.871 16 C -0.176 4.176 17 C 0.049 3.951 18 H 0.161 0.839 19 F -0.209 7.209 20 C -0.114 4.114 21 N -0.307 5.307 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.043 0.957 26 H 0.010 0.990 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.053 -15.088 1.455 19.366 hybrid contribution 0.155 0.782 -1.168 1.414 sum -11.898 -14.306 0.287 18.609 Atomic orbital electron populations 1.22016 0.77737 1.04124 1.02771 1.48194 1.08489 1.06109 1.71477 1.18735 0.90974 0.80492 0.96055 1.21705 1.36945 1.06541 0.92983 0.92766 1.25914 0.94833 0.96445 1.02193 1.70057 1.38908 1.14836 1.33180 0.85369 0.78131 0.78203 0.78816 1.18512 1.20714 1.19759 1.21132 0.87819 0.86136 0.76317 1.90642 1.16819 1.87818 1.51192 1.22467 0.94586 0.88936 0.99316 0.87106 1.22977 1.04695 0.95884 0.94035 1.22667 0.91817 0.94664 0.86002 0.83855 1.92806 1.69170 1.93285 1.65673 1.23676 1.00021 0.92969 0.94743 1.63266 1.48200 1.01884 1.17350 0.90903 0.91507 0.88502 0.95741 0.99010 0.92373 0.92657 0.84908 0.88263 0.88904 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 10.21 127.77 1.30 3.42 16 2 N -0.61 -26.15 2.86 -851.14 -2.43 -28.58 16 3 C 0.26 14.38 5.16 85.63 0.44 14.82 16 4 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.00 0.29 5.46 84.66 0.46 0.75 16 7 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 8 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 9 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 C 0.50 21.51 6.84 87.66 0.60 22.11 16 13 O -0.59 -32.84 16.17 -3.03 -0.05 -32.89 16 14 C 0.06 1.66 2.76 44.32 0.12 1.79 16 15 H 0.11 2.20 6.32 -2.38 -0.02 2.18 16 16 C -0.14 -3.09 6.32 31.50 0.20 -2.89 16 17 C 0.08 1.57 4.84 31.49 0.15 1.73 16 18 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 19 F -0.23 -6.23 17.10 44.97 0.77 -5.47 16 20 C 0.01 0.27 7.27 86.44 0.63 0.89 16 21 N -0.68 -19.05 6.88 -482.71 -3.32 -22.37 16 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 24 H 0.10 1.90 5.95 -2.38 -0.01 1.89 16 25 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 26 H -0.01 -0.54 7.42 -2.39 -0.02 -0.55 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.05 1.68 7.75 -2.39 -0.02 1.67 16 29 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.75 8.12 -2.39 -0.02 1.73 16 32 H 0.35 8.93 8.92 -89.69 -0.80 8.13 16 Total: -1.00 -82.75 274.72 1.75 -81.00 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.33 Total: 7.05 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 4.15 Total: 10.95 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -5.47 Total: -108.10 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.05 Total: -32.89 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.77 Total: -5.47 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -82.75 1.75 -81.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.337 kcal (2) G-P(sol) polarization free energy of solvation -82.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds