Wall clock time and date at job start Mon Mar 30 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47417 * 2 1 4 4 C 1.50706 * 109.46848 * 239.99554 * 2 1 3 5 5 H 1.07999 * 120.00159 * 275.00384 * 4 2 1 6 6 C 1.37878 * 119.99547 * 95.00600 * 4 2 1 7 7 N 1.31520 * 119.99618 * 184.91232 * 6 4 2 8 8 Si 1.86801 * 120.00191 * 4.91310 * 6 4 2 9 9 H 1.48505 * 109.46981 * 84.83789 * 8 6 4 10 10 H 1.48506 * 109.47043 * 204.83327 * 8 6 4 11 11 H 1.48497 * 109.47171 * 324.83445 * 8 6 4 12 12 N 1.46496 * 109.47025 * 120.00142 * 2 1 3 13 13 C 1.34780 * 119.99747 * 274.71757 * 12 2 1 14 14 O 1.21280 * 120.00351 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99844 * 179.97438 * 13 12 2 16 16 H 1.08998 * 110.33622 * 320.80556 * 15 13 12 17 17 C 1.54913 * 110.37073 * 83.17904 * 15 13 12 18 18 C 1.55135 * 101.65200 * 155.89532 * 17 15 13 19 19 H 1.09009 * 110.85106 * 82.79762 * 18 17 15 20 20 F 1.39898 * 110.70721 * 205.95907 * 18 17 15 21 21 C 1.54317 * 103.02330 * 324.34691 * 18 17 15 22 22 N 1.47450 * 107.23334 * 22.28077 * 21 18 17 23 23 H 1.08995 * 109.47557 * 175.04004 * 1 2 3 24 24 H 1.09003 * 109.46824 * 295.04071 * 1 2 3 25 25 H 1.09001 * 109.46717 * 55.03676 * 1 2 3 26 26 H 0.97001 * 119.99582 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00433 * 94.99835 * 12 2 1 28 28 H 1.09004 * 110.98618 * 273.98920 * 17 15 13 29 29 H 1.08999 * 110.99122 * 37.80574 * 17 15 13 30 30 H 1.08998 * 109.88917 * 262.87716 * 21 18 17 31 31 H 1.09004 * 109.89359 * 141.68487 * 21 18 17 32 32 H 1.00897 * 111.00009 * 238.72652 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6134 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7823 10 1 2.1059 2.3990 -3.6929 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1524 -0.0169 2.3557 14 8 1.8684 1.1610 2.4091 15 6 2.6542 -0.7274 3.5864 16 1 2.2346 -1.7319 3.6413 17 6 4.2022 -0.7865 3.5814 18 6 4.5149 -0.9356 5.0936 19 1 4.4294 -1.9762 5.4068 20 9 5.7880 -0.4355 5.3871 21 6 3.4228 -0.0735 5.7611 22 7 2.3096 0.0416 4.8011 23 1 -0.3634 -1.0237 -0.0888 24 1 -0.3633 0.4350 0.9311 25 1 -0.3633 0.5889 -0.8422 26 1 2.9363 -0.1051 -4.2556 27 1 2.2490 -1.6318 1.1526 28 1 4.5580 -1.6517 3.0219 29 1 4.6268 0.1353 3.1839 30 1 3.8193 0.9158 5.9894 31 1 3.0760 -0.5563 6.6748 32 1 2.1238 1.0077 4.5770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707405345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:49 Heat of formation + Delta-G solvation = -94.048867 kcal Electronic energy + Delta-G solvation = -16321.526381 eV Core-core repulsion = 13423.848121 eV Total energy + Delta-G solvation = -2897.678261 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.78211 -39.75244 -37.25823 -34.93215 -32.46393 -30.56114 -29.64172 -28.56871 -25.36885 -23.17687 -21.35489 -20.58856 -19.69645 -18.11248 -16.85796 -16.57398 -15.73362 -15.32570 -15.08630 -14.56064 -14.28603 -13.81800 -13.54165 -13.47282 -13.07919 -12.57447 -12.37176 -11.97912 -11.74214 -11.50237 -11.15113 -11.08174 -10.99820 -10.86298 -10.63646 -9.93018 -9.30133 -9.26412 -8.76405 -8.68490 -8.20671 -6.28768 -4.32963 3.00914 3.21912 3.30193 3.36977 3.68655 4.06693 4.17238 4.27493 4.36378 4.61688 4.77987 5.04981 5.14137 5.17661 5.35552 5.54320 5.62100 5.68788 5.98032 6.28178 6.47155 6.56952 6.63098 6.87037 7.12198 7.23296 7.30040 7.47195 8.04357 8.46906 8.70240 8.82343 9.32823 10.82832 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.036824 B = 0.006626 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.184559 B = 4224.665990 C = 4432.414546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.695 5.695 13 C 0.501 3.499 14 O -0.556 6.556 15 C 0.058 3.942 16 H 0.111 0.889 17 C -0.166 4.166 18 C 0.071 3.929 19 H 0.101 0.899 20 F -0.207 7.207 21 C 0.024 3.976 22 N -0.664 5.664 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.052 0.948 26 H 0.268 0.732 27 H 0.395 0.605 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -1.783 14.671 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.343 5.343 13 C 0.285 3.715 14 O -0.436 6.436 15 C -0.055 4.055 16 H 0.129 0.871 17 C -0.206 4.206 18 C 0.033 3.967 19 H 0.119 0.881 20 F -0.188 7.188 21 C -0.107 4.107 22 N -0.298 5.298 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.188 -1.386 14.760 14.872 hybrid contribution 0.919 1.031 -0.598 1.505 sum 2.108 -0.356 14.161 14.322 Atomic orbital electron populations 1.22211 0.98381 1.00691 0.99335 1.19172 0.91076 0.94314 0.82686 0.93216 1.21001 1.45416 0.95650 0.94933 0.90253 1.24944 0.93565 0.98646 0.95157 1.69882 1.44534 1.36232 1.01685 0.86897 0.79761 0.85810 0.77455 1.19901 1.21085 1.18482 1.46625 1.63986 1.13896 1.09798 1.20404 0.78539 0.87563 0.84988 1.90631 1.52127 1.16062 1.84775 1.22499 0.93810 0.99590 0.89622 0.87134 1.23655 0.95849 1.05278 0.95817 1.22876 0.78945 0.99103 0.95729 0.88125 1.92817 1.41953 1.89538 1.94484 1.23248 0.90043 1.00326 0.97041 1.61890 1.38242 1.19386 1.10270 0.93309 0.95147 0.92856 0.92172 0.77149 0.88483 0.89341 0.91408 0.89242 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.47 37.16 0.35 -2.83 16 2 C 0.23 5.35 2.23 -69.08 -0.15 5.19 16 3 H 0.05 1.27 4.72 -51.93 -0.25 1.02 16 4 C -0.53 -14.00 9.05 -34.44 -0.31 -14.31 16 5 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 8 Si 0.87 21.34 26.99 -169.99 -4.59 16.76 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.26 -6.27 6.82 56.52 0.39 -5.89 16 12 N -0.70 -13.38 5.07 -54.93 -0.28 -13.66 16 13 C 0.50 9.18 7.08 -10.98 -0.08 9.10 16 14 O -0.56 -12.16 15.26 5.56 0.08 -12.08 16 15 C 0.06 0.79 3.81 -67.33 -0.26 0.53 16 16 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 17 C -0.17 -2.05 6.28 -24.59 -0.15 -2.20 16 18 C 0.07 0.75 4.75 -24.91 -0.12 0.64 16 19 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 20 F -0.21 -2.62 17.18 2.25 0.04 -2.59 16 21 C 0.02 0.25 7.40 -2.83 -0.02 0.23 16 22 N -0.66 -8.85 7.30 -105.04 -0.77 -9.61 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.39 6.58 8.59 -40.82 -0.35 6.23 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.36 5.39 7.29 -39.29 -0.29 5.10 16 LS Contribution 272.45 15.07 4.11 4.11 Total: -1.00 -30.40 272.45 -5.72 -36.12 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.25 Total: 7.43 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.84 Total: -1.49 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.27 Total: -48.26 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.40 -5.72 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707405345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.925 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds