Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.50693 * 109.47588 * 239.99865 * 2 1 3 5 5 H 1.07999 * 120.00010 * 274.99946 * 4 2 1 6 6 C 1.37879 * 119.99720 * 94.99969 * 4 2 1 7 7 N 1.31523 * 119.99715 * 184.91802 * 6 4 2 8 8 Si 1.86794 * 120.00266 * 4.91938 * 6 4 2 9 9 H 1.48495 * 109.47288 * 84.82870 * 8 6 4 10 10 H 1.48498 * 109.47051 * 204.83383 * 8 6 4 11 11 H 1.48500 * 109.47160 * 324.82797 * 8 6 4 12 12 N 1.46504 * 109.46987 * 119.99450 * 2 1 3 13 13 C 1.34768 * 120.00327 * 275.00610 * 12 2 1 14 14 O 1.21285 * 120.00316 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00239 * 179.97438 * 13 12 2 16 16 H 1.08995 * 110.33412 * 319.30096 * 15 13 12 17 17 C 1.54909 * 110.37224 * 81.55386 * 15 13 12 18 18 C 1.55263 * 101.59698 * 155.81968 * 17 15 13 19 19 H 1.09005 * 110.73725 * 206.04947 * 18 17 15 20 20 F 1.39900 * 110.75836 * 82.93236 * 18 17 15 21 21 C 1.54314 * 103.08581 * 324.48607 * 18 17 15 22 22 N 1.47443 * 107.23327 * 22.20541 * 21 18 17 23 23 H 1.09001 * 109.47045 * 55.04016 * 1 2 3 24 24 H 1.09009 * 109.46710 * 175.03373 * 1 2 3 25 25 H 1.08993 * 109.47701 * 295.03304 * 1 2 3 26 26 H 0.96995 * 119.99936 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99276 * 95.00451 * 12 2 1 28 28 H 1.09004 * 110.99057 * 273.99314 * 17 15 13 29 29 H 1.08991 * 110.99526 * 37.80840 * 17 15 13 30 30 H 1.09004 * 109.88717 * 262.79844 * 21 18 17 31 31 H 1.08999 * 110.02385 * 141.69311 * 21 18 17 32 32 H 1.00897 * 111.00350 * 238.72321 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1356 -1.7854 -1.2289 6 6 2.3604 0.0122 -2.3579 7 7 2.7061 -0.6131 -3.4621 8 14 2.3137 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3991 -3.6927 11 1 1.1986 2.3275 -1.4450 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8589 1.1587 2.4116 15 6 2.6487 -0.7286 3.5878 16 1 2.2123 -1.7252 3.6542 17 6 4.1951 -0.8173 3.5665 18 6 4.5205 -0.9587 5.0781 19 1 5.5214 -0.5848 5.2940 20 9 4.3918 -2.2892 5.4907 21 6 3.4504 -0.0730 5.7501 22 7 2.3298 0.0547 4.8004 23 1 -0.3633 0.5889 -0.8422 24 1 -0.3633 -1.0239 -0.0890 25 1 -0.3634 0.4348 0.9310 26 1 2.9372 -0.1048 -4.2553 27 1 2.2490 -1.6317 1.1527 28 1 4.5283 -1.6934 3.0100 29 1 4.6328 0.0930 3.1571 30 1 3.8663 0.9109 5.9673 31 1 3.1040 -0.5406 6.6718 32 1 2.1585 1.0223 4.5712 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707405348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = -93.552266 kcal Electronic energy + Delta-G solvation = -16374.710072 eV Core-core repulsion = 13477.053345 eV Total energy + Delta-G solvation = -2897.656726 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.73698 -39.67691 -37.14703 -34.91018 -32.45471 -30.54919 -29.69400 -28.62987 -25.36154 -23.14680 -21.25990 -20.59197 -19.67867 -18.17609 -16.73348 -16.39662 -15.76566 -15.36099 -15.09298 -14.63801 -14.44729 -13.75277 -13.40720 -13.21134 -12.92689 -12.56789 -12.36342 -12.01360 -11.79344 -11.53000 -11.16463 -11.05472 -10.96954 -10.85220 -10.62929 -9.92816 -9.28326 -9.25222 -8.76017 -8.63684 -8.18993 -6.28260 -4.32324 3.04393 3.21391 3.29712 3.36604 3.71871 4.08940 4.20580 4.27607 4.42142 4.58347 4.81372 5.04633 5.12101 5.17894 5.38753 5.46066 5.69586 5.77684 5.97774 6.29206 6.48696 6.61590 6.64838 6.88010 7.13843 7.28685 7.31908 7.48608 8.05704 8.48635 8.71309 8.84206 9.33265 10.83403 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.039491 B = 0.006619 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.859863 B = 4229.143681 C = 4403.241535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.230 3.770 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.887 5.887 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.696 5.696 13 C 0.501 3.499 14 O -0.558 6.558 15 C 0.057 3.943 16 H 0.109 0.891 17 C -0.166 4.166 18 C 0.070 3.930 19 H 0.097 0.903 20 F -0.204 7.204 21 C 0.024 3.976 22 N -0.666 5.666 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.268 0.732 27 H 0.395 0.605 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -0.038 14.544 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.343 5.343 13 C 0.285 3.715 14 O -0.438 6.438 15 C -0.056 4.056 16 H 0.127 0.873 17 C -0.206 4.206 18 C 0.033 3.967 19 H 0.115 0.885 20 F -0.185 7.185 21 C -0.106 4.106 22 N -0.300 5.300 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.631 0.320 14.645 14.883 hybrid contribution 0.837 0.925 -0.600 1.385 sum 3.468 1.245 14.045 14.520 Atomic orbital electron populations 1.22216 0.98415 1.00706 0.99329 1.19165 0.91068 0.94274 0.82702 0.93235 1.21008 1.45343 0.95680 0.94935 0.90249 1.24946 0.93602 0.98637 0.95149 1.69882 1.44568 1.36219 1.01691 0.86889 0.79714 0.85826 0.77447 1.19942 1.21099 1.18480 1.46628 1.64014 1.13981 1.09715 1.20440 0.78512 0.87530 0.84989 1.90623 1.52128 1.16162 1.84862 1.22581 0.94347 0.99350 0.89337 0.87314 1.23705 0.96035 1.05178 0.95651 1.22769 1.00720 0.78421 0.94768 0.88475 1.92829 1.97417 1.36844 1.91391 1.23311 0.90142 0.99624 0.97507 1.61831 1.39012 1.18216 1.10909 0.92864 0.93308 0.95136 0.92185 0.77122 0.88343 0.88904 0.91186 0.89226 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.47 37.16 0.35 -2.88 16 2 C 0.23 5.39 2.22 -69.08 -0.15 5.24 16 3 H 0.05 1.26 4.73 -51.93 -0.25 1.02 16 4 C -0.53 -14.06 9.05 -34.44 -0.31 -14.37 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 8 Si 0.87 21.28 26.99 -169.99 -4.59 16.69 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -6.26 6.82 56.52 0.39 -5.87 16 12 N -0.70 -13.64 5.07 -54.93 -0.28 -13.92 16 13 C 0.50 9.32 7.09 -10.99 -0.08 9.24 16 14 O -0.56 -12.18 15.25 5.55 0.08 -12.09 16 15 C 0.06 0.82 3.81 -67.34 -0.26 0.57 16 16 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.17 -2.02 6.30 -24.52 -0.15 -2.18 16 18 C 0.07 0.74 4.75 -24.84 -0.12 0.63 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 20 F -0.20 -2.56 17.20 2.25 0.04 -2.52 16 21 C 0.02 0.26 7.40 -2.84 -0.02 0.24 16 22 N -0.67 -9.21 7.30 -105.05 -0.77 -9.98 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.40 6.84 8.59 -40.82 -0.35 6.49 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.36 5.33 7.28 -39.29 -0.29 5.05 16 LS Contribution 272.46 15.07 4.11 4.11 Total: -1.00 -30.49 272.46 -5.72 -36.21 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.25 Total: 7.91 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.84 Total: -1.37 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.27 Total: -48.93 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.49 -5.72 -36.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707405348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.343 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds