Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.50693 * 109.47588 * 239.99865 * 2 1 3 5 5 H 1.07999 * 120.00010 * 274.99946 * 4 2 1 6 6 C 1.37879 * 119.99720 * 94.99969 * 4 2 1 7 7 N 1.31523 * 119.99715 * 184.91802 * 6 4 2 8 8 Si 1.86794 * 120.00266 * 4.91938 * 6 4 2 9 9 H 1.48495 * 109.47288 * 84.82870 * 8 6 4 10 10 H 1.48498 * 109.47051 * 204.83383 * 8 6 4 11 11 H 1.48500 * 109.47160 * 324.82797 * 8 6 4 12 12 N 1.46504 * 109.46987 * 119.99450 * 2 1 3 13 13 C 1.34768 * 120.00327 * 275.00610 * 12 2 1 14 14 O 1.21285 * 120.00316 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00239 * 179.97438 * 13 12 2 16 16 H 1.08995 * 110.33412 * 319.30096 * 15 13 12 17 17 C 1.54909 * 110.37224 * 81.55386 * 15 13 12 18 18 C 1.55263 * 101.59698 * 155.81968 * 17 15 13 19 19 H 1.09005 * 110.73725 * 206.04947 * 18 17 15 20 20 F 1.39900 * 110.75836 * 82.93236 * 18 17 15 21 21 C 1.54314 * 103.08581 * 324.48607 * 18 17 15 22 22 N 1.47443 * 107.23327 * 22.20541 * 21 18 17 23 23 H 1.09001 * 109.47045 * 55.04016 * 1 2 3 24 24 H 1.09009 * 109.46710 * 175.03373 * 1 2 3 25 25 H 1.08993 * 109.47701 * 295.03304 * 1 2 3 26 26 H 0.96995 * 119.99936 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99276 * 95.00451 * 12 2 1 28 28 H 1.09004 * 110.99057 * 273.99314 * 17 15 13 29 29 H 1.08991 * 110.99526 * 37.80840 * 17 15 13 30 30 H 1.09004 * 109.88717 * 262.79844 * 21 18 17 31 31 H 1.08999 * 110.02385 * 141.69311 * 21 18 17 32 32 H 1.00897 * 111.00350 * 238.72321 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1356 -1.7854 -1.2289 6 6 2.3604 0.0122 -2.3579 7 7 2.7061 -0.6131 -3.4621 8 14 2.3137 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3991 -3.6927 11 1 1.1986 2.3275 -1.4450 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8589 1.1587 2.4116 15 6 2.6487 -0.7286 3.5878 16 1 2.2123 -1.7252 3.6542 17 6 4.1951 -0.8173 3.5665 18 6 4.5205 -0.9587 5.0781 19 1 5.5214 -0.5848 5.2940 20 9 4.3918 -2.2892 5.4907 21 6 3.4504 -0.0730 5.7501 22 7 2.3298 0.0547 4.8004 23 1 -0.3633 0.5889 -0.8422 24 1 -0.3633 -1.0239 -0.0890 25 1 -0.3634 0.4348 0.9310 26 1 2.9372 -0.1048 -4.2553 27 1 2.2490 -1.6317 1.1527 28 1 4.5283 -1.6934 3.0100 29 1 4.6328 0.0930 3.1571 30 1 3.8663 0.9109 5.9673 31 1 3.1040 -0.5406 6.6718 32 1 2.1585 1.0223 4.5712 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707405348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = -117.161020 kcal Electronic energy + Delta-G solvation = -16375.733824 eV Core-core repulsion = 13477.053345 eV Total energy + Delta-G solvation = -2898.680479 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.63099 -41.09532 -38.36298 -36.66214 -34.43088 -32.12036 -30.71915 -29.84601 -27.35710 -24.47127 -22.20257 -22.10938 -21.26108 -19.66471 -18.41962 -17.56523 -17.02265 -16.90793 -16.31464 -15.87052 -15.65367 -15.37083 -14.73290 -14.60786 -14.34199 -14.28560 -13.96811 -13.28890 -13.07256 -12.94299 -12.82087 -12.79383 -12.46551 -12.00808 -11.88983 -11.83836 -11.26433 -10.89384 -10.76378 -9.89563 -9.64687 -8.40597 -6.47343 1.27877 1.32749 1.43000 1.60033 2.25153 2.29132 2.99535 3.08987 3.24422 3.56020 3.64149 3.78163 4.07505 4.22811 4.25547 4.43405 4.57159 4.70882 4.76712 4.80507 4.87762 5.05815 5.09971 5.33731 5.42383 5.63180 5.68236 6.09274 6.21203 6.57799 6.81791 7.17699 7.34650 8.74321 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.039491 B = 0.006619 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.859863 B = 4229.143681 C = 4403.241535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.234 3.766 3 H 0.032 0.968 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.034 3.966 7 N -0.929 5.929 8 Si 0.927 3.073 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.257 1.257 12 N -0.697 5.697 13 C 0.502 3.498 14 O -0.590 6.590 15 C 0.064 3.936 16 H 0.118 0.882 17 C -0.165 4.165 18 C 0.076 3.924 19 H 0.131 0.869 20 F -0.215 7.215 21 C 0.022 3.978 22 N -0.678 5.678 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.271 0.729 27 H 0.407 0.593 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 0.385 16.215 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.130 3.870 3 H 0.050 0.950 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.567 5.567 8 Si 0.752 3.248 9 H -0.198 1.198 10 H -0.203 1.203 11 H -0.181 1.181 12 N -0.345 5.345 13 C 0.289 3.711 14 O -0.471 6.471 15 C -0.049 4.049 16 H 0.135 0.865 17 C -0.205 4.205 18 C 0.039 3.961 19 H 0.148 0.852 20 F -0.196 7.196 21 C -0.107 4.107 22 N -0.311 5.311 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.242 0.758 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.118 0.716 16.346 16.656 hybrid contribution 0.678 0.738 -1.054 1.454 sum 3.796 1.454 15.291 15.822 Atomic orbital electron populations 1.22122 0.97157 1.01307 0.99513 1.18907 0.91955 0.93167 0.82966 0.94982 1.21177 1.44464 0.94833 0.96112 0.92484 1.25615 0.93710 1.02449 0.94945 1.69980 1.46465 1.37796 1.02468 0.86044 0.79699 0.81317 0.77724 1.19805 1.20293 1.18101 1.46368 1.64393 1.14505 1.09243 1.21088 0.77347 0.87147 0.85560 1.90604 1.53309 1.17754 1.85477 1.22545 0.95906 0.99012 0.87409 0.86461 1.23725 0.94036 1.05395 0.97352 1.22888 1.02350 0.77776 0.93120 0.85174 1.92814 1.97559 1.37863 1.91368 1.23442 0.89397 1.01077 0.96799 1.61886 1.40845 1.17592 1.10775 0.93291 0.92406 0.94411 0.91975 0.75814 0.87693 0.89166 0.88908 0.88586 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 9.47 71.98 0.68 -5.39 16 2 C 0.23 10.82 2.22 44.24 0.10 10.92 16 3 H 0.03 1.62 4.73 -2.39 -0.01 1.60 16 4 C -0.53 -28.00 9.05 25.60 0.23 -27.77 16 5 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 6 C 0.03 1.85 5.47 84.65 0.46 2.32 16 7 N -0.93 -54.56 13.96 21.45 0.30 -54.27 16 8 Si 0.93 43.73 26.99 68.60 1.85 45.59 16 9 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.26 -11.86 6.82 99.48 0.68 -11.18 16 12 N -0.70 -26.71 5.07 -446.10 -2.26 -28.98 16 13 C 0.50 18.09 7.09 87.66 0.62 18.71 16 14 O -0.59 -25.22 15.25 -3.05 -0.05 -25.26 16 15 C 0.06 1.74 3.81 44.64 0.17 1.90 16 16 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 17 C -0.17 -3.63 6.30 32.02 0.20 -3.43 16 18 C 0.08 1.35 4.75 31.82 0.15 1.50 16 19 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 20 F -0.22 -4.78 17.20 44.97 0.77 -4.01 16 21 C 0.02 0.40 7.40 86.65 0.64 1.05 16 22 N -0.68 -17.38 7.30 -486.28 -3.55 -20.93 16 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 27 H 0.41 13.72 8.59 -92.71 -0.80 12.92 16 28 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.09 2.06 8.05 -2.39 -0.02 2.04 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.68 8.12 -2.39 -0.02 1.66 16 32 H 0.35 9.93 7.28 -89.70 -0.65 9.28 16 Total: -1.00 -64.47 272.46 -0.01 -64.48 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.34 Total: 23.57 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 3.26 Total: -0.20 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.51 Total: -104.17 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.77 Total: -4.01 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.85 Total: 45.59 kcal Total: -64.47 -0.01 -64.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707405348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.682 kcal (2) G-P(sol) polarization free energy of solvation -64.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds