Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47281 * 2 1 4 4 C 1.52998 * 109.47269 * 119.99941 * 2 1 3 5 5 C 1.50706 * 109.47040 * 294.99935 * 4 2 1 6 6 H 1.07995 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00116 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99999 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99816 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47095 * 90.00245 * 9 7 5 11 11 H 1.48498 * 109.47117 * 210.00172 * 9 7 5 12 12 H 1.48498 * 109.47696 * 330.00057 * 9 7 5 13 13 N 1.46503 * 109.47143 * 239.99912 * 2 1 3 14 14 N 1.39869 * 125.46067 * 299.95566 * 13 2 1 15 15 C 1.30243 * 110.08872 * 180.02562 * 14 13 2 16 16 C 1.45927 * 107.77887 * 0.02562 * 15 14 13 17 17 C 1.39945 * 134.02254 * 180.02562 * 16 15 14 18 18 C 1.36465 * 119.63631 * 179.97438 * 17 16 15 19 19 C 1.38962 * 120.62495 * 359.96171 * 18 17 16 20 20 C 1.36594 * 120.81955 * 0.06076 * 19 18 17 21 21 C 1.37038 * 125.46121 * 120.00259 * 13 2 1 22 22 H 1.08998 * 109.46876 * 60.00424 * 1 2 3 23 23 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47004 * 300.00392 * 1 2 3 25 25 H 1.09006 * 109.47116 * 54.99668 * 4 2 1 26 26 H 1.08999 * 109.47735 * 175.00033 * 4 2 1 27 27 H 0.96999 * 119.99994 * 179.97438 * 8 7 5 28 28 H 1.08001 * 126.10809 * 180.02562 * 15 14 13 29 29 H 1.08003 * 120.18052 * 359.71972 * 17 16 15 30 30 H 1.08000 * 119.68757 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.59334 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.07701 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4021 3.7284 8 7 1.6440 0.2769 4.7995 9 14 2.9615 -1.9894 3.9029 10 1 4.4151 -1.6871 3.8789 11 1 2.6131 -2.6431 5.1900 12 1 2.6267 -2.9002 2.7788 13 7 2.0183 -0.6906 -1.1962 14 7 1.7525 -2.0228 -1.5294 15 6 2.3341 -2.3272 -2.6543 16 6 3.0417 -1.1411 -3.1253 17 6 3.8284 -0.8597 -4.2480 18 6 4.3628 0.3864 -4.4024 19 6 4.1324 1.3777 -3.4561 20 6 3.3685 1.1271 -2.3519 21 6 2.8096 -0.1353 -2.1675 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 1.8906 -0.0464 5.6801 28 1 2.2989 -3.2861 -3.1499 29 1 4.0149 -1.6258 -4.9861 30 1 4.9704 0.6044 -5.2683 31 1 4.5632 2.3583 -3.5952 32 1 3.1975 1.9063 -1.6238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709982678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = 77.891392 kcal Electronic energy + Delta-G solvation = -15402.854056 eV Core-core repulsion = 12943.400909 eV Total energy + Delta-G solvation = -2459.453147 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96967 -37.13557 -35.20715 -32.56940 -31.26587 -29.65097 -28.75850 -27.48870 -23.78004 -22.83377 -21.72004 -21.55367 -18.99096 -17.39726 -16.52525 -16.30109 -15.05193 -14.83532 -14.33576 -14.07961 -13.84897 -13.39165 -13.19131 -12.77073 -12.19967 -11.89286 -11.74121 -11.45198 -11.17583 -11.09017 -10.81221 -10.54816 -10.38975 -10.08645 -9.84458 -9.60220 -9.31782 -8.62845 -8.46444 -7.55883 -6.14222 -4.14230 1.16952 1.73017 2.81679 2.84336 3.26997 3.34679 3.41675 3.98199 4.38778 4.70050 4.83490 5.04695 5.10118 5.20108 5.36815 5.52555 5.64307 5.77233 5.81031 5.93345 5.96413 6.16706 6.43283 6.48703 6.51811 6.65034 6.69285 6.83132 7.00510 7.06601 7.21696 7.45042 7.69798 8.03156 8.37676 8.86348 9.47212 10.98065 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.006909 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.820477 B = 4051.740199 C = 4144.634832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.171 3.829 3 H 0.094 0.906 4 C -0.015 4.015 5 C -0.523 4.523 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.264 1.264 13 N -0.382 5.382 14 N -0.238 5.238 15 C 0.047 3.953 16 C -0.188 4.188 17 C -0.043 4.043 18 C -0.171 4.171 19 C -0.078 4.078 20 C -0.136 4.136 21 C 0.128 3.872 22 H 0.039 0.961 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.031 0.969 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.190 0.810 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -0.921 -17.028 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.072 3.928 3 H 0.112 0.888 4 C -0.053 4.053 5 C -0.561 4.561 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.169 5.169 14 N -0.050 5.050 15 C -0.149 4.149 16 C -0.197 4.197 17 C -0.064 4.064 18 C -0.190 4.190 19 C -0.099 4.099 20 C -0.157 4.157 21 C 0.011 3.989 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.207 0.793 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.732 -1.279 -15.673 15.961 hybrid contribution 1.073 -0.510 -0.302 1.226 sum 3.805 -1.789 -15.976 16.520 Atomic orbital electron populations 1.22022 0.93893 1.02793 1.01726 1.21527 0.95155 0.94959 0.81173 0.88827 1.19899 0.96198 0.97252 0.91966 1.20916 1.36629 1.09819 0.88724 0.90455 1.24921 0.95313 0.96867 0.95752 1.69889 1.46444 1.39123 0.98111 0.86831 0.80640 0.84455 0.77798 1.20273 1.21136 1.18852 1.49187 1.41519 1.06724 1.19493 1.76576 1.19090 0.94987 1.14381 1.24967 0.97686 0.98424 0.93848 1.19969 1.06908 0.94151 0.98643 1.20262 0.94525 0.96606 0.95003 1.20553 1.04108 0.93707 1.00665 1.20638 0.96871 0.99152 0.93266 1.19910 1.01552 0.94230 1.00058 1.18957 0.94607 0.95043 0.90287 0.94179 0.92039 0.89429 0.95087 0.96768 0.92516 0.79339 0.86027 0.86197 0.85793 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.25 37.16 0.34 -2.45 16 2 C 0.17 3.53 3.09 -67.93 -0.21 3.32 16 3 H 0.09 1.84 7.42 -51.93 -0.39 1.46 16 4 C -0.02 -0.37 3.76 -27.88 -0.10 -0.47 16 5 C -0.52 -14.43 8.96 -34.44 -0.31 -14.74 16 6 H 0.08 2.23 7.30 -52.49 -0.38 1.84 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 9 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 13 N -0.38 -7.47 3.32 -52.24 -0.17 -7.65 16 14 N -0.24 -4.53 12.22 31.87 0.39 -4.14 16 15 C 0.05 0.72 12.28 -15.15 -0.19 0.54 16 16 C -0.19 -2.93 6.36 -105.21 -0.67 -3.60 16 17 C -0.04 -0.54 10.07 -39.58 -0.40 -0.94 16 18 C -0.17 -1.97 9.97 -39.95 -0.40 -2.37 16 19 C -0.08 -0.97 9.96 -39.91 -0.40 -1.37 16 20 C -0.14 -2.04 9.79 -39.79 -0.39 -2.43 16 21 C 0.13 2.25 6.87 -84.18 -0.58 1.67 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.09 1.73 6.95 -51.93 -0.36 1.37 16 25 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 26 H 0.01 0.36 7.57 -51.93 -0.39 -0.04 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.12 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 274.44 15.07 4.14 4.14 Total: -1.00 -31.55 274.44 -6.94 -38.48 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.00 Total: -1.01 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.39 Total: -20.81 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.99 Total: -38.13 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.55 -6.94 -38.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709982678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.376 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds