Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47281 * 2 1 4 4 C 1.52998 * 109.47269 * 119.99941 * 2 1 3 5 5 C 1.50706 * 109.47040 * 294.99935 * 4 2 1 6 6 H 1.07995 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00116 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99999 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99816 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47095 * 90.00245 * 9 7 5 11 11 H 1.48498 * 109.47117 * 210.00172 * 9 7 5 12 12 H 1.48498 * 109.47696 * 330.00057 * 9 7 5 13 13 N 1.46503 * 109.47143 * 239.99912 * 2 1 3 14 14 N 1.39869 * 125.46067 * 299.95566 * 13 2 1 15 15 C 1.30243 * 110.08872 * 180.02562 * 14 13 2 16 16 C 1.45927 * 107.77887 * 0.02562 * 15 14 13 17 17 C 1.39945 * 134.02254 * 180.02562 * 16 15 14 18 18 C 1.36465 * 119.63631 * 179.97438 * 17 16 15 19 19 C 1.38962 * 120.62495 * 359.96171 * 18 17 16 20 20 C 1.36594 * 120.81955 * 0.06076 * 19 18 17 21 21 C 1.37038 * 125.46121 * 120.00259 * 13 2 1 22 22 H 1.08998 * 109.46876 * 60.00424 * 1 2 3 23 23 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47004 * 300.00392 * 1 2 3 25 25 H 1.09006 * 109.47116 * 54.99668 * 4 2 1 26 26 H 1.08999 * 109.47735 * 175.00033 * 4 2 1 27 27 H 0.96999 * 119.99994 * 179.97438 * 8 7 5 28 28 H 1.08001 * 126.10809 * 180.02562 * 15 14 13 29 29 H 1.08003 * 120.18052 * 359.71972 * 17 16 15 30 30 H 1.08000 * 119.68757 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.59334 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.07701 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4021 3.7284 8 7 1.6440 0.2769 4.7995 9 14 2.9615 -1.9894 3.9029 10 1 4.4151 -1.6871 3.8789 11 1 2.6131 -2.6431 5.1900 12 1 2.6267 -2.9002 2.7788 13 7 2.0183 -0.6906 -1.1962 14 7 1.7525 -2.0228 -1.5294 15 6 2.3341 -2.3272 -2.6543 16 6 3.0417 -1.1411 -3.1253 17 6 3.8284 -0.8597 -4.2480 18 6 4.3628 0.3864 -4.4024 19 6 4.1324 1.3777 -3.4561 20 6 3.3685 1.1271 -2.3519 21 6 2.8096 -0.1353 -2.1675 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 1.8906 -0.0464 5.6801 28 1 2.2989 -3.2861 -3.1499 29 1 4.0149 -1.6258 -4.9861 30 1 4.9704 0.6044 -5.2683 31 1 4.5632 2.3583 -3.5952 32 1 3.1975 1.9063 -1.6238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709982678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = 59.031912 kcal Electronic energy + Delta-G solvation = -15403.671864 eV Core-core repulsion = 12943.400909 eV Total energy + Delta-G solvation = -2460.270955 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.15681 -38.28717 -36.81248 -34.56361 -32.59701 -30.77625 -30.22134 -29.15128 -25.54686 -23.91081 -23.18140 -22.82482 -20.41372 -19.27957 -17.89474 -17.59810 -16.54411 -16.06539 -15.94238 -15.53252 -15.26752 -14.76710 -14.61988 -14.26389 -14.01290 -13.35598 -13.09016 -12.89236 -12.77113 -12.67612 -12.17651 -12.09627 -11.92692 -11.82558 -11.56548 -11.40455 -10.89914 -10.83957 -9.58494 -8.75029 -8.37178 -6.41083 0.11248 0.66707 1.26072 1.29077 1.41030 1.51682 1.66463 2.27515 2.94701 2.97290 3.52204 3.69990 3.90468 4.12903 4.17766 4.20808 4.30031 4.42292 4.55436 4.76506 4.79038 4.86159 4.99802 5.08510 5.12528 5.15862 5.32480 5.45610 5.53069 5.66584 5.70103 6.04336 6.13701 6.23481 6.63807 6.80256 7.23397 8.78024 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.006909 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.820477 B = 4051.740199 C = 4144.634832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.180 3.820 3 H 0.094 0.906 4 C -0.002 4.002 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.938 5.938 9 Si 0.936 3.064 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.263 1.263 13 N -0.407 5.407 14 N -0.289 5.289 15 C 0.066 3.934 16 C -0.205 4.205 17 C -0.039 4.039 18 C -0.166 4.166 19 C -0.066 4.066 20 C -0.167 4.167 21 C 0.098 3.902 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.003 0.997 27 H 0.269 0.731 28 H 0.232 0.768 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -1.740 -19.990 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 H 0.112 0.888 4 C -0.041 4.041 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.578 5.578 9 Si 0.761 3.239 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.188 1.188 13 N -0.195 5.195 14 N -0.101 5.101 15 C -0.131 4.131 16 C -0.213 4.213 17 C -0.059 4.059 18 C -0.185 4.185 19 C -0.086 4.086 20 C -0.189 4.189 21 C -0.017 4.017 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.036 0.964 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.248 0.752 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.411 -2.091 -18.659 19.287 hybrid contribution 0.620 -0.182 0.428 0.775 sum 5.030 -2.273 -18.231 19.048 Atomic orbital electron populations 1.21878 0.93216 1.02247 1.01934 1.21123 0.95668 0.94565 0.80759 0.88821 1.19683 0.95248 0.96403 0.92735 1.21162 1.35615 1.09191 0.90175 0.92785 1.25721 0.96491 1.00088 0.95565 1.70002 1.48075 1.40991 0.98722 0.85867 0.79457 0.80623 0.77973 1.19465 1.20099 1.18753 1.48858 1.43503 1.07339 1.19785 1.76514 1.21725 0.95192 1.16690 1.25745 0.95190 0.99776 0.92380 1.20328 1.07867 0.93625 0.99474 1.20733 0.92845 0.97988 0.94305 1.21066 1.03320 0.92903 1.01222 1.21095 0.94804 1.00855 0.91868 1.20134 1.03397 0.93712 1.01682 1.19457 0.95059 0.96578 0.90614 0.92140 0.92869 0.90885 0.96420 0.97867 0.92205 0.75209 0.82365 0.82343 0.82750 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 9.25 71.98 0.67 -4.65 16 2 C 0.18 7.66 3.09 44.99 0.14 7.80 16 3 H 0.09 3.87 7.42 -2.39 -0.02 3.86 16 4 C 0.00 -0.12 3.76 29.85 0.11 -0.01 16 5 C -0.52 -29.92 8.96 25.60 0.23 -29.69 16 6 H 0.05 3.27 7.30 -2.91 -0.02 3.24 16 7 C 0.02 1.17 5.47 84.65 0.46 1.63 16 8 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 9 Si 0.94 46.04 27.47 68.60 1.88 47.93 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -12.80 6.54 99.48 0.65 -12.15 16 13 N -0.41 -16.10 3.32 -319.19 -1.06 -17.16 16 14 N -0.29 -10.97 12.22 -53.09 -0.65 -11.62 16 15 C 0.07 1.89 12.28 86.92 1.07 2.96 16 16 C -0.20 -5.90 6.36 -20.24 -0.13 -6.03 16 17 C -0.04 -0.79 10.07 22.27 0.22 -0.57 16 18 C -0.17 -3.04 9.97 22.03 0.22 -2.82 16 19 C -0.07 -1.41 9.96 22.06 0.22 -1.19 16 20 C -0.17 -4.89 9.79 22.14 0.22 -4.68 16 21 C 0.10 3.38 6.87 39.21 0.27 3.65 16 22 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 24 H 0.07 3.03 6.95 -2.39 -0.02 3.01 16 25 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 26 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.23 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.12 3.45 7.62 -2.91 -0.02 3.43 16 Total: -1.00 -70.30 274.44 5.22 -65.08 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.05 Total: 7.12 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 3.70 Total: -33.61 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -1.41 Total: -86.52 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.93 kcal Total: -70.30 5.22 -65.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709982678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.112 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds