Wall clock time and date at job start Mon Mar 30 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.46832 * 304.99800 * 3 2 1 5 5 F 1.39905 * 109.47157 * 64.99591 * 3 2 1 6 6 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 7 7 O 1.21280 * 120.00189 * 314.99814 * 6 3 2 8 8 N 1.34782 * 119.99771 * 134.99833 * 6 3 2 9 9 C 1.46497 * 119.99615 * 180.02562 * 8 6 3 10 10 C 1.53950 * 113.73800 * 253.74027 * 9 8 6 11 11 N 1.47810 * 86.03606 * 222.08524 * 10 9 8 12 12 C 1.36940 * 134.45916 * 204.64267 * 11 10 9 13 13 H 1.08003 * 120.00076 * 179.86818 * 12 11 10 14 14 C 1.38808 * 119.99743 * 359.87147 * 12 11 10 15 15 N 1.31620 * 120.00205 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47499 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47172 * 120.00231 * 16 14 12 19 19 H 1.48504 * 109.47223 * 239.99531 * 16 14 12 20 20 C 1.47582 * 91.05133 * 24.55111 * 11 10 9 21 21 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 22 22 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 24 24 H 1.09004 * 109.47242 * 239.99518 * 2 1 3 25 25 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 26 26 H 0.96994 * 119.99696 * 359.97438 * 8 6 3 27 27 H 1.08993 * 112.94560 * 25.33394 * 9 8 6 28 28 H 1.08997 * 113.77185 * 336.34806 * 10 9 8 29 29 H 1.09002 * 113.76862 * 107.74829 * 10 9 8 30 30 H 0.96996 * 120.00008 * 180.02562 * 15 14 12 31 31 H 1.08996 * 113.77261 * 221.15213 * 20 11 10 32 32 H 1.09006 * 113.77073 * 89.75362 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 9 1.6699 2.0680 1.1954 6 6 3.5420 1.4442 -0.1237 7 8 4.2064 0.6810 0.5448 8 7 4.1468 2.2940 -0.9774 9 6 5.6068 2.2953 -1.0980 10 6 6.2821 3.5111 -0.4380 11 7 7.1469 3.5518 -1.6360 12 6 8.4011 4.0354 -1.8975 13 1 8.8227 3.9361 -2.8869 14 6 9.1305 4.6532 -0.8911 15 7 8.6166 4.7747 0.3145 16 14 10.8416 5.3123 -1.2477 17 1 11.1862 5.0521 -2.6685 18 1 10.8725 6.7745 -0.9901 19 1 11.8268 4.6339 -0.3677 20 6 6.1176 2.8601 -2.4360 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.6153 2.9041 -1.5123 27 1 6.0566 1.3411 -0.8242 28 1 5.6277 4.3772 -0.3390 29 1 6.8151 3.2718 0.4822 30 1 9.1262 5.2067 1.0177 31 1 6.5194 2.1019 -3.1080 32 1 5.4147 3.5345 -2.9252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267655833.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:25 Heat of formation + Delta-G solvation = -39.024719 kcal Electronic energy + Delta-G solvation = -16000.520994 eV Core-core repulsion = 13105.228760 eV Total energy + Delta-G solvation = -2895.292235 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.86259 -39.54794 -37.58796 -34.07354 -33.63193 -31.85861 -28.33256 -26.97643 -24.88184 -23.43371 -21.96213 -20.41171 -19.63489 -17.55562 -16.91168 -16.67945 -15.90297 -15.42620 -14.95543 -14.40440 -14.10008 -13.93807 -13.74791 -13.02981 -12.72970 -12.38457 -12.10539 -11.92736 -11.50695 -11.50244 -11.27625 -11.01547 -10.89510 -10.82711 -10.49139 -10.05327 -9.60918 -9.48792 -8.84773 -8.56303 -6.96011 -5.80262 -3.14902 2.61176 3.18494 3.38212 3.42899 3.45880 4.34501 4.39815 4.50332 4.66640 4.75578 5.08164 5.17492 5.26001 5.43984 5.47010 5.52111 5.71000 5.91949 5.94007 6.00529 6.14014 6.33768 6.48576 6.64784 7.19746 7.28633 7.50999 7.70396 7.92977 8.32254 8.99463 9.65981 10.51454 11.36513 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.068991 B = 0.005006 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.754663 B = 5592.162143 C = 5755.626995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.082 3.918 4 H 0.097 0.903 5 F -0.191 7.191 6 C 0.488 3.512 7 O -0.524 6.524 8 N -0.706 5.706 9 C 0.088 3.912 10 C 0.154 3.846 11 N -0.607 5.607 12 C -0.228 4.228 13 H 0.083 0.917 14 C -0.006 4.006 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.114 3.886 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.399 0.601 27 H 0.112 0.888 28 H 0.030 0.970 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.051 0.949 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 -6.586 -3.622 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.043 3.957 4 H 0.115 0.885 5 F -0.172 7.172 6 C 0.271 3.729 7 O -0.400 6.400 8 N -0.357 5.357 9 C -0.016 4.016 10 C 0.028 3.972 11 N -0.333 5.333 12 C -0.355 4.355 13 H 0.101 0.899 14 C -0.203 4.203 15 N -0.564 5.564 16 Si 0.745 3.255 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.216 1.216 20 C -0.013 4.013 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.233 0.767 27 H 0.130 0.870 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.534 -6.962 -3.035 16.399 hybrid contribution 0.611 0.969 -0.360 1.201 sum -13.924 -5.992 -3.395 15.534 Atomic orbital electron populations 1.21775 0.94389 1.02434 1.02421 1.21980 0.96976 0.93883 1.05060 1.21666 0.92745 0.95925 0.85413 0.88504 1.92878 1.92076 1.83916 1.48357 1.20909 0.89935 0.81289 0.80811 1.90729 1.66033 1.39721 1.43492 1.46242 1.09105 1.38249 1.42098 1.24012 0.76681 1.01834 0.99122 1.22716 0.89557 0.91408 0.93553 1.45726 1.11998 1.68349 1.07277 1.19034 0.88521 1.31594 0.96346 0.89926 1.24832 0.98876 1.00856 0.95694 1.69839 1.37271 1.47813 1.01504 0.86012 0.83663 0.78352 0.77488 1.20375 1.21661 1.21564 1.22864 0.90999 0.94218 0.93260 0.92417 0.91872 0.91968 0.89815 0.89451 0.76743 0.87023 0.95227 0.90400 0.93500 0.93132 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.83 37.16 0.37 -0.82 16 2 C -0.14 -1.41 5.41 -26.73 -0.14 -1.56 16 3 C 0.08 0.96 3.77 -27.88 -0.11 0.85 16 4 H 0.10 0.78 7.99 -51.93 -0.42 0.36 16 5 F -0.19 -2.69 16.75 2.25 0.04 -2.65 16 6 C 0.49 7.66 7.17 -10.98 -0.08 7.58 16 7 O -0.52 -10.48 16.23 5.56 0.09 -10.39 16 8 N -0.71 -10.68 5.37 -55.34 -0.30 -10.98 16 9 C 0.09 1.71 4.40 -70.14 -0.31 1.40 16 10 C 0.15 3.72 7.33 -2.84 -0.02 3.70 16 11 N -0.61 -15.58 3.70 -177.88 -0.66 -16.24 16 12 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 13 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 15 N -0.92 -27.67 11.39 55.49 0.63 -27.03 16 16 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.11 2.23 8.69 -2.97 -0.03 2.20 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.52 7.93 -51.93 -0.41 0.10 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 26 H 0.40 4.67 8.60 -40.82 -0.35 4.32 16 27 H 0.11 2.35 7.51 -51.93 -0.39 1.96 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 2.15 7.17 -51.93 -0.37 1.78 16 30 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -33.43 279.32 -6.02 -39.46 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.44 Total: -0.07 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.58 Total: 6.54 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.32 Total: -54.25 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.43 -6.02 -39.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267655833.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.434 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds