Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47425 * 2 1 4 4 H 1.09001 * 109.46844 * 54.99888 * 3 2 1 5 5 F 1.39897 * 109.46824 * 294.99641 * 3 2 1 6 6 C 1.50698 * 109.46938 * 174.99860 * 3 2 1 7 7 O 1.21283 * 120.00472 * 45.00223 * 6 3 2 8 8 N 1.34777 * 119.99538 * 224.99561 * 6 3 2 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 3 10 10 C 1.53951 * 113.74297 * 254.01897 * 9 8 6 11 11 N 1.47814 * 86.03758 * 222.08522 * 10 9 8 12 12 C 1.36932 * 134.45715 * 204.64642 * 11 10 9 13 13 H 1.07995 * 120.00326 * 179.86751 * 12 11 10 14 14 C 1.38817 * 119.99793 * 359.86085 * 12 11 10 15 15 N 1.31613 * 120.00127 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99909 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47134 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47068 * 119.99857 * 16 14 12 19 19 H 1.48493 * 109.47426 * 240.00266 * 16 14 12 20 20 C 1.47577 * 91.05097 * 24.55007 * 11 10 9 21 21 H 1.09001 * 109.47673 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47211 * 300.00507 * 1 2 3 23 23 H 1.09007 * 109.47181 * 60.00124 * 1 2 3 24 24 H 1.08998 * 109.47071 * 239.99645 * 2 1 3 25 25 H 1.09007 * 109.47181 * 119.99876 * 2 1 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 8 6 3 27 27 H 1.09000 * 112.94810 * 25.60828 * 9 8 6 28 28 H 1.09000 * 113.77101 * 336.35008 * 10 9 8 29 29 H 1.09000 * 113.76926 * 107.74289 * 10 9 8 30 30 H 0.97003 * 119.99806 * 180.02562 * 15 14 12 31 31 H 1.09005 * 113.76936 * 221.15467 * 20 11 10 32 32 H 1.08997 * 113.77659 * 89.75281 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 9 1.6700 2.0679 -1.1954 6 6 3.5419 1.4442 0.1239 7 8 4.2064 0.6810 -0.5446 8 7 4.1466 2.2940 0.9774 9 6 5.6063 2.2915 1.1023 10 6 6.1160 1.6461 2.4037 11 7 7.0770 2.7676 2.4627 12 6 8.3043 2.9495 3.0422 13 1 8.8186 3.8928 2.9329 14 6 8.8872 1.9214 3.7703 15 7 8.2606 0.7717 3.9032 16 14 10.5611 2.1697 4.5615 17 1 11.0498 3.5406 4.2661 18 1 10.4451 1.9922 6.0313 19 1 11.5188 1.1742 4.0166 20 6 6.1843 3.6113 1.6447 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8932 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.6152 2.9043 1.5123 27 1 6.1089 1.9279 0.2060 28 1 5.3850 1.6509 3.2121 29 1 6.5837 0.6724 2.2573 30 1 8.6678 0.0534 4.4123 31 1 6.7064 4.2038 0.8934 32 1 5.4733 4.1947 2.2296 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267655834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = -63.040043 kcal Electronic energy + Delta-G solvation = -16007.942483 eV Core-core repulsion = 13111.608866 eV Total energy + Delta-G solvation = -2896.333617 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.90154 -40.99479 -39.24578 -35.25831 -34.90055 -33.77989 -29.86030 -28.38090 -26.65201 -25.10024 -23.06435 -21.65432 -21.31263 -18.85575 -18.71705 -17.86722 -17.26521 -16.96302 -16.46457 -15.80588 -15.73487 -15.32134 -14.78022 -14.54183 -13.92094 -13.76931 -13.36514 -13.24318 -13.21268 -12.92998 -12.82313 -12.65275 -12.31438 -11.99806 -11.92960 -11.79913 -11.56286 -10.92398 -10.82964 -10.07878 -8.99820 -7.94369 -5.29629 1.33826 1.45520 1.47146 1.57471 1.92541 2.47036 3.21884 3.32104 3.43712 3.60922 3.69788 3.79658 3.95281 4.26636 4.43639 4.47871 4.55391 4.72530 4.78261 4.87500 5.05162 5.09955 5.18140 5.20645 5.37555 5.46063 5.62600 5.87209 6.43186 6.86482 7.09833 7.56070 8.48218 9.22883 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.059789 B = 0.005106 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.202123 B = 5482.673915 C = 5721.451437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.091 3.909 4 H 0.145 0.855 5 F -0.201 7.201 6 C 0.484 3.516 7 O -0.573 6.573 8 N -0.691 5.691 9 C 0.115 3.885 10 C 0.153 3.847 11 N -0.640 5.640 12 C -0.236 4.236 13 H 0.091 0.909 14 C -0.068 4.068 15 N -0.956 5.956 16 Si 0.982 3.018 17 H -0.261 1.261 18 H -0.291 1.291 19 H -0.294 1.294 20 C 0.123 3.877 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.420 0.580 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.249 0.751 31 H 0.064 0.936 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.039 3.401 -4.817 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.052 3.948 4 H 0.162 0.838 5 F -0.182 7.182 6 C 0.269 3.731 7 O -0.452 6.452 8 N -0.343 5.343 9 C 0.008 3.992 10 C 0.026 3.974 11 N -0.367 5.367 12 C -0.364 4.364 13 H 0.109 0.891 14 C -0.261 4.261 15 N -0.605 5.605 16 Si 0.810 3.190 17 H -0.185 1.185 18 H -0.217 1.217 19 H -0.221 1.221 20 C -0.002 4.002 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.258 0.742 27 H 0.108 0.892 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.295 2.838 -5.152 16.387 hybrid contribution 0.966 -0.016 0.715 1.202 sum -14.329 2.823 -4.436 15.263 Atomic orbital electron populations 1.21752 0.92082 1.03407 1.03151 1.22022 0.98857 0.92941 1.04352 1.21815 0.89280 0.97426 0.86327 0.83758 1.92852 1.91833 1.84121 1.49347 1.21748 0.91828 0.80080 0.79428 1.90718 1.67589 1.40900 1.45967 1.45971 1.07372 1.38857 1.42146 1.23256 0.79370 0.98450 0.98077 1.22601 0.89230 0.92942 0.92584 1.46047 1.16064 1.13213 1.61377 1.19482 0.92517 0.99118 1.25255 0.89132 1.25703 1.02772 0.95878 1.01721 1.70032 1.39876 1.04583 1.45994 0.84953 0.78755 0.77882 0.77380 1.18527 1.21749 1.22095 1.23021 0.91648 0.92860 0.92707 0.90976 0.90478 0.92267 0.91667 0.89379 0.74178 0.89249 0.95030 0.94873 0.94200 0.91790 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.83 71.98 0.71 -1.28 16 2 C -0.14 -2.81 5.41 30.59 0.17 -2.64 16 3 C 0.09 1.87 3.77 29.85 0.11 1.99 16 4 H 0.14 1.70 7.99 -2.39 -0.02 1.68 16 5 F -0.20 -4.85 16.75 44.97 0.75 -4.10 16 6 C 0.48 14.59 7.17 87.66 0.63 15.22 16 7 O -0.57 -23.20 16.23 -3.04 -0.05 -23.25 16 8 N -0.69 -19.49 5.37 -447.35 -2.40 -21.90 16 9 C 0.11 4.37 4.40 46.75 0.21 4.57 16 10 C 0.15 7.35 7.33 86.44 0.63 7.99 16 11 N -0.64 -32.52 3.70 -716.60 -2.65 -35.17 16 12 C -0.24 -13.15 10.70 84.04 0.90 -12.26 16 13 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 14 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 15 N -0.96 -58.61 11.39 21.65 0.25 -58.36 16 16 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 C 0.12 4.60 8.69 86.49 0.75 5.35 16 21 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 23 H 0.06 0.84 7.94 -2.38 -0.02 0.82 16 24 H 0.06 1.56 8.05 -2.39 -0.02 1.54 16 25 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.42 8.30 8.60 -92.71 -0.80 7.50 16 27 H 0.09 3.86 7.51 -2.39 -0.02 3.84 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.03 1.87 7.16 -2.39 -0.02 1.85 16 30 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 31 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -73.51 279.33 2.81 -70.70 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.32 Total: 8.83 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 4.57 Total: 15.52 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.81 Total: -115.43 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.75 Total: -4.10 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.51 2.81 -70.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267655834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.656 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds