Wall clock time and date at job start Mon Mar 30 2020 03:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00147 * 2 1 4 4 C 1.52998 * 109.47332 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.48857 * 62.98662 * 4 3 2 6 6 H 1.09003 * 109.46695 * 58.36105 * 5 4 3 7 7 O 1.42894 * 109.47226 * 298.36301 * 5 4 3 8 8 C 1.50695 * 109.47069 * 178.35929 * 5 4 3 9 9 H 1.08003 * 120.00076 * 5.22900 * 8 5 4 10 10 C 1.37877 * 120.00027 * 185.22759 * 8 5 4 11 11 N 1.31515 * 119.99773 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 120.00242 * 179.97438 * 10 8 5 13 13 H 1.48509 * 109.46820 * 90.00184 * 12 10 8 14 14 H 1.48493 * 109.47555 * 210.00266 * 12 10 8 15 15 H 1.48506 * 109.47025 * 330.00460 * 12 10 8 16 16 C 1.53099 * 109.48094 * 183.01434 * 4 3 2 17 17 C 1.53174 * 109.16196 * 62.37646 * 16 4 3 18 18 C 1.53177 * 109.03796 * 56.97966 * 17 16 4 19 19 C 1.53093 * 109.16333 * 303.01878 * 18 17 16 20 20 O 1.42900 * 109.48049 * 302.95783 * 4 3 2 21 21 H 1.08994 * 109.47459 * 300.00580 * 1 2 3 22 22 H 1.09008 * 109.46627 * 60.00510 * 1 2 3 23 23 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47093 * 59.99397 * 3 2 1 25 25 H 1.09003 * 109.46861 * 299.99631 * 3 2 1 26 26 H 0.96701 * 114.00017 * 300.00462 * 7 5 4 27 27 H 0.97002 * 119.99661 * 179.97438 * 11 10 8 28 28 H 1.08997 * 109.51963 * 302.47114 * 16 4 3 29 29 H 1.09000 * 109.56922 * 182.31167 * 16 4 3 30 30 H 1.08998 * 109.54231 * 176.84725 * 17 16 4 31 31 H 1.09004 * 109.54319 * 297.11446 * 17 16 4 32 32 H 1.08996 * 109.52145 * 62.92355 * 18 17 16 33 33 H 1.08995 * 109.52423 * 183.11439 * 18 17 16 34 34 H 1.08996 * 109.48108 * 297.62529 * 19 18 17 35 35 H 1.09005 * 109.49322 * 177.59852 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9931 0.4910 -1.2841 6 1 3.6505 1.0620 -2.1471 7 8 3.4430 -0.8268 -1.3359 8 6 5.4977 0.4083 -1.3017 9 1 6.0665 0.7330 -0.4429 10 6 6.1482 -0.0818 -2.4141 11 7 5.4556 -0.4768 -3.4601 12 14 8.0133 -0.1837 -2.4363 13 1 8.4432 -1.5041 -1.9099 14 1 8.5014 -0.0235 -3.8295 15 1 8.5781 0.8956 -1.5868 16 6 4.1582 2.5812 0.0765 17 6 3.7440 3.2455 1.3931 18 6 4.1751 2.3525 2.5606 19 6 3.5517 0.9649 2.3888 20 8 3.9522 0.4166 1.1313 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8901 26 1 3.7062 -1.3922 -0.5969 27 1 5.9133 -0.8213 -4.2429 28 1 3.8064 3.1828 -0.7615 29 1 5.2443 2.4993 0.0357 30 1 4.2291 4.2178 1.4793 31 1 2.6617 3.3735 1.4123 32 1 5.2615 2.2651 2.5705 33 1 3.8355 2.7907 3.4991 34 1 2.4654 1.0480 2.4196 35 1 3.8892 0.3122 3.1940 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535675187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:52 Heat of formation + Delta-G solvation = -145.896250 kcal Electronic energy + Delta-G solvation = -17866.202237 eV Core-core repulsion = 15057.443259 eV Total energy + Delta-G solvation = -2808.758978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.54747 -36.66149 -35.05915 -33.09912 -31.94535 -31.25141 -27.50083 -26.66647 -25.32430 -23.32609 -23.05601 -20.74365 -18.76949 -16.90696 -16.12870 -15.92548 -15.25981 -14.88451 -14.48710 -14.31932 -13.95741 -13.68306 -13.25050 -12.74088 -12.50718 -12.15429 -12.06448 -11.85387 -11.11429 -10.93825 -10.88145 -10.85737 -10.63790 -10.58399 -10.34761 -9.93101 -9.70381 -9.11528 -8.88456 -8.54569 -8.44787 -7.78520 -5.88469 -4.01904 3.36276 3.42798 3.45305 4.20341 4.49896 4.68511 5.17489 5.20906 5.27744 5.41122 5.52056 5.55662 5.64237 5.69067 5.74912 5.86596 5.93400 5.97721 6.00724 6.08193 6.19244 6.34775 6.37734 6.51679 6.72541 6.85431 6.97664 7.70203 7.74721 7.97510 8.14578 8.38777 9.01133 9.62680 9.77217 11.16774 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.010857 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.073714 B = 2578.332146 C = 3247.945734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.350 6.350 3 C 0.042 3.958 4 C 0.098 3.902 5 C 0.251 3.749 6 H 0.063 0.937 7 O -0.551 6.551 8 C -0.551 4.551 9 H 0.060 0.940 10 C 0.075 3.925 11 N -0.868 5.868 12 Si 0.887 3.113 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.275 1.275 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.154 4.154 19 C 0.057 3.943 20 O -0.345 6.345 21 H 0.026 0.974 22 H 0.033 0.967 23 H 0.080 0.920 24 H 0.036 0.964 25 H 0.047 0.953 26 H 0.351 0.649 27 H 0.258 0.742 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 5.755 9.442 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C -0.035 4.035 4 C 0.058 3.942 5 C 0.193 3.807 6 H 0.081 0.919 7 O -0.353 6.353 8 C -0.589 4.589 9 H 0.078 0.922 10 C -0.129 4.129 11 N -0.505 5.505 12 Si 0.715 3.285 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.200 1.200 16 C -0.171 4.171 17 C -0.163 4.163 18 C -0.192 4.192 19 C -0.021 4.021 20 O -0.263 6.263 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.195 0.805 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.363 5.583 8.671 12.118 hybrid contribution 0.876 0.406 0.547 1.110 sum -5.487 5.989 9.218 12.286 Atomic orbital electron populations 1.22664 0.83336 1.02007 0.98641 1.88165 1.17276 1.26418 1.94894 1.23212 0.96091 0.85391 0.98814 1.22681 0.88793 0.92171 0.90590 1.19303 0.92244 0.81936 0.87175 0.91914 1.86484 1.74381 1.24624 1.49844 1.21643 0.92061 1.44296 1.00867 0.92185 1.25031 0.97780 0.94611 0.95492 1.70061 1.34916 1.40939 1.04591 0.86704 0.86357 0.78475 0.76968 1.20661 1.21407 1.19975 1.22040 1.03566 0.95422 0.96038 1.21691 1.00298 0.98521 0.95784 1.22174 1.01978 0.97015 0.97988 1.22436 0.97662 0.93884 0.88112 1.88095 1.77152 1.48960 1.12142 0.95512 0.94823 0.90144 0.94576 0.93512 0.80485 0.93183 0.91587 0.88977 0.92164 0.92656 0.91138 0.92111 0.94144 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.35 -6.93 8.76 -62.59 -0.55 -7.48 16 3 C 0.04 0.79 4.12 37.16 0.15 0.94 16 4 C 0.10 2.04 0.39 -90.57 -0.04 2.00 16 5 C 0.25 6.50 2.14 -27.88 -0.06 6.44 16 6 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 7 O -0.55 -15.04 11.23 -62.30 -0.70 -15.74 16 8 C -0.55 -15.25 7.56 -34.44 -0.26 -15.51 16 9 H 0.06 1.65 6.75 -52.48 -0.35 1.30 16 10 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 11 N -0.87 -26.14 13.06 55.43 0.72 -25.42 16 12 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 16 C -0.13 -2.46 4.69 -26.59 -0.12 -2.59 16 17 C -0.13 -1.85 5.72 -26.55 -0.15 -2.00 16 18 C -0.15 -2.21 6.14 -26.59 -0.16 -2.37 16 19 C 0.06 0.92 6.52 37.21 0.24 1.16 16 20 O -0.35 -7.26 9.13 -57.53 -0.53 -7.79 16 21 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.03 0.48 8.14 -51.92 -0.42 0.05 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.04 0.60 4.99 -51.93 -0.26 0.34 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.35 9.21 8.51 45.56 0.39 9.60 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.89 6.56 -51.93 -0.34 1.55 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.63 6.41 -51.93 -0.33 0.30 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -31.39 276.23 -5.89 -37.28 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.60 Total: 6.56 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 0.62 Total: -8.29 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.72 Total: -25.42 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.77 Total: -31.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.39 -5.89 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.616 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds