Wall clock time and date at job start Mon Mar 30 2020 03:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00147 * 2 1 4 4 C 1.52998 * 109.47332 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.48857 * 62.98662 * 4 3 2 6 6 H 1.09003 * 109.46695 * 58.36105 * 5 4 3 7 7 O 1.42894 * 109.47226 * 298.36301 * 5 4 3 8 8 C 1.50695 * 109.47069 * 178.35929 * 5 4 3 9 9 H 1.08003 * 120.00076 * 5.22900 * 8 5 4 10 10 C 1.37877 * 120.00027 * 185.22759 * 8 5 4 11 11 N 1.31515 * 119.99773 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 120.00242 * 179.97438 * 10 8 5 13 13 H 1.48509 * 109.46820 * 90.00184 * 12 10 8 14 14 H 1.48493 * 109.47555 * 210.00266 * 12 10 8 15 15 H 1.48506 * 109.47025 * 330.00460 * 12 10 8 16 16 C 1.53099 * 109.48094 * 183.01434 * 4 3 2 17 17 C 1.53174 * 109.16196 * 62.37646 * 16 4 3 18 18 C 1.53177 * 109.03796 * 56.97966 * 17 16 4 19 19 C 1.53093 * 109.16333 * 303.01878 * 18 17 16 20 20 O 1.42900 * 109.48049 * 302.95783 * 4 3 2 21 21 H 1.08994 * 109.47459 * 300.00580 * 1 2 3 22 22 H 1.09008 * 109.46627 * 60.00510 * 1 2 3 23 23 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47093 * 59.99397 * 3 2 1 25 25 H 1.09003 * 109.46861 * 299.99631 * 3 2 1 26 26 H 0.96701 * 114.00017 * 300.00462 * 7 5 4 27 27 H 0.97002 * 119.99661 * 179.97438 * 11 10 8 28 28 H 1.08997 * 109.51963 * 302.47114 * 16 4 3 29 29 H 1.09000 * 109.56922 * 182.31167 * 16 4 3 30 30 H 1.08998 * 109.54231 * 176.84725 * 17 16 4 31 31 H 1.09004 * 109.54319 * 297.11446 * 17 16 4 32 32 H 1.08996 * 109.52145 * 62.92355 * 18 17 16 33 33 H 1.08995 * 109.52423 * 183.11439 * 18 17 16 34 34 H 1.08996 * 109.48108 * 297.62529 * 19 18 17 35 35 H 1.09005 * 109.49322 * 177.59852 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9931 0.4910 -1.2841 6 1 3.6505 1.0620 -2.1471 7 8 3.4430 -0.8268 -1.3359 8 6 5.4977 0.4083 -1.3017 9 1 6.0665 0.7330 -0.4429 10 6 6.1482 -0.0818 -2.4141 11 7 5.4556 -0.4768 -3.4601 12 14 8.0133 -0.1837 -2.4363 13 1 8.4432 -1.5041 -1.9099 14 1 8.5014 -0.0235 -3.8295 15 1 8.5781 0.8956 -1.5868 16 6 4.1582 2.5812 0.0765 17 6 3.7440 3.2455 1.3931 18 6 4.1751 2.3525 2.5606 19 6 3.5517 0.9649 2.3888 20 8 3.9522 0.4166 1.1313 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8901 26 1 3.7062 -1.3922 -0.5969 27 1 5.9133 -0.8213 -4.2429 28 1 3.8064 3.1828 -0.7615 29 1 5.2443 2.4993 0.0357 30 1 4.2291 4.2178 1.4793 31 1 2.6617 3.3735 1.4123 32 1 5.2615 2.2651 2.5705 33 1 3.8355 2.7907 3.4991 34 1 2.4654 1.0480 2.4196 35 1 3.8892 0.3122 3.1940 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535675187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:51 Heat of formation + Delta-G solvation = -168.301256 kcal Electronic energy + Delta-G solvation = -17867.173791 eV Core-core repulsion = 15057.443259 eV Total energy + Delta-G solvation = -2809.730532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04174 -38.05164 -37.03413 -34.52107 -34.10639 -32.79637 -28.91573 -28.54034 -26.68660 -24.88734 -24.64818 -22.36656 -20.17960 -18.96814 -17.62156 -17.52734 -16.67740 -16.58962 -16.22246 -16.00089 -15.26731 -15.08430 -14.91970 -14.32210 -14.21829 -13.82702 -13.40635 -13.33893 -12.96809 -12.78755 -12.64275 -12.20112 -12.16697 -12.02469 -11.89283 -11.73326 -11.13215 -10.85276 -10.65831 -10.47417 -10.03612 -9.76604 -8.06596 -6.26704 1.40567 1.42109 1.52083 2.43547 2.81067 3.18448 3.32211 3.87479 3.99645 4.04534 4.08586 4.22938 4.32840 4.40143 4.53926 4.57347 4.60887 4.64472 4.74575 4.86955 4.90772 4.93501 5.03580 5.16522 5.23745 5.34730 5.50829 5.66953 5.79226 6.17823 6.42810 6.69652 6.82762 7.43657 7.65001 8.98842 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.010857 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.073714 B = 2578.332146 C = 3247.945734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.047 3.953 4 C 0.104 3.896 5 C 0.247 3.753 6 H 0.028 0.972 7 O -0.565 6.565 8 C -0.553 4.553 9 H 0.058 0.942 10 C 0.020 3.980 11 N -0.909 5.909 12 Si 0.955 3.045 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.264 1.264 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.149 4.149 19 C 0.048 3.952 20 O -0.377 6.377 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.352 0.648 27 H 0.259 0.741 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 6.906 11.474 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.303 6.303 3 C -0.030 4.030 4 C 0.064 3.936 5 C 0.189 3.811 6 H 0.046 0.954 7 O -0.368 6.368 8 C -0.591 4.591 9 H 0.076 0.924 10 C -0.181 4.181 11 N -0.548 5.548 12 Si 0.780 3.220 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.188 1.188 16 C -0.171 4.171 17 C -0.156 4.156 18 C -0.187 4.187 19 C -0.028 4.028 20 O -0.297 6.297 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.196 0.804 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.536 6.751 10.724 14.258 hybrid contribution 0.863 0.018 -0.054 0.865 sum -5.672 6.769 10.670 13.851 Atomic orbital electron populations 1.22877 0.80990 1.03241 1.00072 1.88109 1.19969 1.27078 1.95178 1.23117 0.94432 0.85463 0.99941 1.22265 0.90474 0.92337 0.88520 1.19161 0.91387 0.81459 0.89073 0.95441 1.86437 1.74530 1.25598 1.50234 1.21910 0.93306 1.43357 1.00535 0.92407 1.25871 1.02608 0.94409 0.95171 1.70202 1.36879 1.42388 1.05311 0.85635 0.80584 0.78592 0.77188 1.20461 1.20928 1.18833 1.21976 1.01708 0.94643 0.98770 1.21671 1.01526 0.99073 0.93281 1.22159 1.01246 0.95831 0.99442 1.22726 0.98512 0.95353 0.86215 1.88012 1.77839 1.50133 1.13685 0.92838 0.94495 0.89157 0.91505 0.94027 0.80414 0.93250 0.91650 0.91628 0.89989 0.90952 0.92235 0.88473 0.93132 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.01 113.37 1.25 1.94 16 2 O -0.38 -14.95 8.76 -122.82 -1.08 -16.02 16 3 C 0.05 1.72 4.12 71.98 0.30 2.02 16 4 C 0.10 4.33 0.39 -10.76 0.00 4.33 16 5 C 0.25 13.18 2.14 29.85 0.06 13.25 16 6 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 7 O -0.57 -31.90 11.23 -123.10 -1.38 -33.28 16 8 C -0.55 -31.34 7.56 25.60 0.19 -31.15 16 9 H 0.06 3.24 6.75 -2.91 -0.02 3.22 16 10 C 0.02 1.16 5.43 84.65 0.46 1.62 16 11 N -0.91 -56.30 13.06 21.45 0.28 -56.02 16 12 Si 0.95 45.22 29.54 68.60 2.03 47.25 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 16 C -0.13 -4.84 4.69 30.69 0.14 -4.70 16 17 C -0.12 -3.11 5.72 30.71 0.18 -2.93 16 18 C -0.15 -3.77 6.14 30.68 0.19 -3.58 16 19 C 0.05 1.45 6.52 72.01 0.47 1.92 16 20 O -0.38 -15.63 9.13 -127.66 -1.17 -16.80 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.07 1.99 4.99 -2.39 -0.01 1.98 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.35 19.11 8.51 -74.06 -0.63 18.48 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.70 6.56 -2.39 -0.02 2.68 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.68 6.55 -2.38 -0.02 1.66 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.41 6.41 -2.39 -0.02 1.39 16 35 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -69.01 276.23 2.36 -66.65 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.45 Total: 25.52 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 3.23 Total: -17.29 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -3.62 Total: -66.10 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.01 2.36 -66.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.653 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds